BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115097.2.2
         (1086 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF666895.1|CF666895  RTCNT1_26_G11.g1_A029 Root control P...    40   0.19 
gb|CO171305.1|CO171305  NDL1_20_C09.g1_A029 Needles control ...    40   0.19 
gb|DR168662.1|DR168662  RTPHOS1_27_B09.b1_A029 Roots minus p...    40   0.19 

>gb|CF666895.1|CF666895 RTCNT1_26_G11.g1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_26_G11_A029 5', mRNA sequence
          Length = 779

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 450 ggcgggtggtgcaacccgccgcgggagcacttcgac 485
           |||||||||||||| || || || ||||||||||||
Sbjct: 391 ggcgggtggtgcaatcctcctcgcgagcacttcgac 426



>gb|CO171305.1|CO171305 NDL1_20_C09.g1_A029 Needles control Pinus taeda cDNA clone
           NDL1_20_C09_A029 5', mRNA sequence
          Length = 776

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 450 ggcgggtggtgcaacccgccgcgggagcacttcgac 485
           |||||||||||||| || || || ||||||||||||
Sbjct: 388 ggcgggtggtgcaatcctcctcgcgagcacttcgac 423



>gb|DR168662.1|DR168662 RTPHOS1_27_B09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
           clone RTPHOS1_27_B09_A029 3', mRNA sequence
          Length = 781

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 450 ggcgggtggtgcaacccgccgcgggagcacttcgac 485
           |||||||||||||| || || || ||||||||||||
Sbjct: 141 ggcgggtggtgcaatcctcctcgcgagcacttcgac 176



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,918
Number of Sequences: 355925
Number of extensions: 100918
Number of successful extensions: 28005
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28002
Number of HSP's gapped (non-prelim): 3
length of query: 1086
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1067
effective length of database: 210,514,662
effective search space: 224619144354
effective search space used: 224619144354
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)