BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus adde... 56 3e-006
gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism... 42 0.043
gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus pota... 42 0.043
gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus... 42 0.043
gb|CX648762.1|CX648762 COLD1_30_F12.g1_A029 Root cold Pinus... 42 0.043
gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus... 42 0.043
gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus... 42 0.043
gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated w... 42 0.043
gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nit... 42 0.043
gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nit... 42 0.043
gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulf... 42 0.043
gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulf... 42 0.043
gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus p... 42 0.043
>gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_B02_A029 3', mRNA sequence
Length = 882
Score = 56.0 bits (28), Expect = 3e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 483 gacacagattatgaaggactacttggaggcgtgcacaaaactatcata 530
||||| |||||||||| |||||||||||| | |||||||||||||||
Sbjct: 171 gacactgattatgaagaactacttggaggtttacacaaaactatcata 218
>gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_8_E04_A029 3', mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 189 gctttaaggtatttgtatgttcgatgggg 217
>gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_C09_A029 5', mRNA sequence
Length = 851
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 472 gctttaaggtatttgtatgttcgatgggg 444
>gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_F12_A029 3', mRNA sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 77 gctttaaggtatttgtatgttcgatgggg 105
>gb|CX648762.1|CX648762 COLD1_30_F12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_F12_A029 5', mRNA sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 50 gctttaaggtatttgtatgttcgatgggg 78
>gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 3', mRNA sequence
Length = 699
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 72 gctttaaggtatttgtatgttcgatgggg 100
>gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 5', mRNA sequence
Length = 608
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 65 gctttaaggtatttgtatgttcgatgggg 93
>gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_D08_A032 5', mRNA sequence
Length = 603
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 121 gctttaaggtatttgtatgttcgatgggg 149
>gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_B04_A029 5', mRNA sequence
Length = 829
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 417 gctttaaggtatttgtatgttcgatgggg 445
>gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_B04_A029 5', mRNA sequence
Length = 929
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 411 gctttaaggtatttgtatgttcgatgggg 439
>gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 3', mRNA sequence
Length = 763
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 262 gctttaaggtatttgtatgttcgatgggg 290
>gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 5', mRNA sequence
Length = 759
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 224 gctttaaggtatttgtatgttcgatgggg 252
>gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_28_G05_A029 3', mRNA sequence
Length = 763
Score = 42.1 bits (21), Expect = 0.043
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 411 gctttaaggtatttgtatatccgatgggg 439
|||||||||||||||||| | ||||||||
Sbjct: 119 gctttaaggtatttgtatgttcgatgggg 147
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 118,955
Number of Sequences: 355925
Number of extensions: 118955
Number of successful extensions: 36729
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36711
Number of HSP's gapped (non-prelim): 18
length of query: 1005
length of database: 217,277,237
effective HSP length: 19
effective length of query: 986
effective length of database: 210,514,662
effective search space: 207567456732
effective search space used: 207567456732
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)