BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071761.2.1
(638 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO367090.1|CO367090 RTK1_32_C09.b1_A029 Roots minus pota... 60 1e-007
gb|DR098995.1|DR098995 STRR1_50_E02.b1_A033 Stem Response R... 52 3e-005
dbj|BD224542.1| Materials and methods for the modification ... 52 3e-005
gb|AI812407.1|AI812407 10A6 Pine Lambda Zap Xylem library P... 50 1e-004
gb|AW290167.1|AW290167 NXNV015G05F Nsf Xylem Normal wood Ve... 50 1e-004
gb|BX253310.1|BX253310 BX253310 Pinus pinaster differenciat... 50 1e-004
gb|BF010576.1|BF010576 NXCI_086_C09_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BF169470.1|BF169470 NXCI_123_A06_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BF518234.1|BF518234 NXSI_036_F06_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BG317657.1|BG317657 NXPV_004_C07_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BG526919.1|BG526919 NXPV_057_D07_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BI077306.1|BI077306 NXPV_095_D09_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BI643841.1|BI643841 NXPV_123_F05_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BQ698042.1|BQ698042 NXPV_063_H04_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BQ702305.1|BQ702305 NXSI_127_C04_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BQ702559.1|BQ702559 NXSI_130_A02_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|CD026879.1|CD026879 NXNV015G05 Nsf Xylem Normal wood Ver... 50 1e-004
gb|CF385606.1|CF385606 RTDR1_5_D06.b1_A015 Loblolly pine ro... 50 1e-004
gb|CF393502.1|CF393502 RTDR3_13_D03.g1_A022 Loblolly pine r... 50 1e-004
gb|CF399865.1|CF399865 RTWW1_1_F04.g1_A015 Well-watered lob... 50 1e-004
gb|CF401996.1|CF401996 RTWW1_16_D03.g1_A015 Well-watered lo... 50 1e-004
gb|CF402273.1|CF402273 RTWW1_19_G06.g1_A015 Well-watered lo... 50 1e-004
gb|CF671298.1|CF671298 RTCNT1_56_D06.b1_A029 Root control P... 50 1e-004
gb|BX784216.1|BX784216 BX784216 Pinus pinaster differenciat... 50 1e-004
gb|CO159104.1|CO159104 FLD1_11_H06.b1_A029 Root flooded Pin... 50 1e-004
gb|CO159169.1|CO159169 FLD1_11_H06.g1_A029 Root flooded Pin... 50 1e-004
gb|CO166419.1|CO166419 FLD1_61_H04.g1_A029 Root flooded Pin... 50 1e-004
gb|CO200758.1|CO200758 RTCNT2_1_G11.b1_A029 Root control 2 ... 50 1e-004
gb|CO200836.1|CO200836 RTCNT2_1_G11.g1_A029 Root control 2 ... 50 1e-004
gb|CO201630.1|CO201630 RTCNT2_7_C08.b1_A029 Root control 2 ... 50 1e-004
gb|CO201703.1|CO201703 RTCNT2_7_C08.g1_A029 Root control 2 ... 50 1e-004
gb|CO362045.1|CO362045 NDL2_8_G01.g1_A029 Needles control 2... 50 1e-004
gb|CV032697.1|CV032697 RTNACL1_17_F12.g1_A029 Roots plus ad... 50 1e-004
gb|CX714585.1|CX714585 RTPQ1_23_E02.g1_A032 Roots treated w... 50 1e-004
gb|DR018039.1|DR018039 STRS1_20_D02.b1_A034 Shoot tip pitch... 50 1e-004
gb|DR019194.1|DR019194 STRS1_28_H10.b2_A034 Shoot tip pitch... 50 1e-004
gb|DR019282.1|DR019282 STRS1_28_H10.g1_A034 Shoot tip pitch... 50 1e-004
gb|DR049100.1|DR049100 RTBOR1_13_H01.b1_A029 Roots plus add... 50 1e-004
gb|DR055128.1|DR055128 RTCA1_21_E12.g2_A029 Roots minus cal... 50 1e-004
gb|DR069800.1|DR069800 RTDK1_9_B09.g1_A029 Roots, dark Pinu... 50 1e-004
gb|DR071752.1|DR071752 RTDK1_21_H05.g1_A029 Roots, dark Pin... 50 1e-004
gb|DR092921.1|DR092921 STRR1_5_A01.b1_A033 Stem Response Re... 50 1e-004
gb|DR092999.1|DR092999 STRR1_5_A01.g1_A033 Stem Response Re... 50 1e-004
gb|DR096367.1|DR096367 STRR1_27_C01.g1_A033 Stem Response R... 50 1e-004
gb|DR101893.1|DR101893 STRR1_76_C02.g1_A033 Stem Response R... 50 1e-004
gb|DR101975.1|DR101975 STRR1_77_E04.b1_A033 Stem Response R... 50 1e-004
gb|DR102397.1|DR102397 STRR1_80_G02.g1_A033 Stem Response R... 50 1e-004
gb|DR116726.1|DR116726 RTMG1_2_A01.g1_A029 Roots minus magn... 50 1e-004
gb|DR386037.1|DR386037 RTHG1_12_B08.g1_A029 Roots plus adde... 50 1e-004
gb|DR743998.1|DR743998 RTCU1_19_C05.g1_A029 Roots plus adde... 50 1e-004
gb|DR744549.1|DR744549 RTCU1_23_E12.b1_A029 Roots plus adde... 50 1e-004
gb|DR744616.1|DR744616 RTCU1_23_E12.g1_A029 Roots plus adde... 50 1e-004
gb|U12012.1|PTU12012 Pinus taeda PT4CL1 4-coumarate-CoA lig... 50 1e-004
gb|U12013.1|PTU12013 Pinus taeda PT4CL2 4-coumarate-CoA lig... 50 1e-004
dbj|BD224332.1| Materials and methods for the modification ... 50 1e-004
dbj|BD224366.1| Materials and methods for the modification ... 50 1e-004
dbj|BD272988.1| Materials and methods for the modification ... 50 1e-004
gb|AW754726.1|AW754726 PC07B01 Pine TriplEx pollen cone lib... 48 4e-004
gb|CO163929.1|CO163929 FLD1_44_E06.g1_A029 Root flooded Pin... 48 4e-004
gb|DR100567.1|DR100567 STRR1_65_D03.b1_A033 Stem Response R... 48 4e-004
gb|U39404.1|PTU39404 Pinus taeda xylem 4-coumarate:CoA liga... 46 0.002
gb|U39405.1|PTU39405 Pinus taeda xylem 4-coumarate:CoA liga... 46 0.002
gb|AH014198.1|SEG_AY764393S Pinus taeda isolate 22 4-coumar... 46 0.002
gb|AY764394.1|AY764393S2 Pinus taeda isolate 22 4-coumarate... 46 0.002
gb|AH014199.1|SEG_AY764396S Pinus taeda isolate 10 4-coumar... 46 0.002
gb|AY764397.1|AY764396S2 Pinus taeda isolate 10 4-coumarate... 46 0.002
gb|AH014200.1|SEG_AY764399S Pinus taeda isolate 24 4-coumar... 46 0.002
gb|AY764400.1|AY764399S2 Pinus taeda isolate 24 4-coumarate... 46 0.002
gb|AH014201.1|SEG_AY764402S Pinus taeda isolate 15 4-coumar... 46 0.002
gb|AY764403.1|AY764402S2 Pinus taeda isolate 15 4-coumarate... 46 0.002
gb|AH014202.1|SEG_AY764405S Pinus taeda isolate 17 4-coumar... 46 0.002
gb|AY764406.1|AY764405S2 Pinus taeda isolate 17 4-coumarate... 46 0.002
gb|AH014203.1|SEG_AY764408S Pinus taeda isolate 23 4-coumar... 46 0.002
gb|AY764409.1|AY764408S2 Pinus taeda isolate 23 4-coumarate... 46 0.002
gb|AH014204.1|SEG_AY764411S Pinus taeda isolate 16 4-coumar... 46 0.002
gb|AY764412.1|AY764411S2 Pinus taeda isolate 16 4-coumarate... 46 0.002
gb|AH014205.1|SEG_AY764414S Pinus taeda isolate 30 4-coumar... 46 0.002
gb|AY764415.1|AY764414S2 Pinus taeda isolate 30 4-coumarate... 46 0.002
gb|AH014206.1|SEG_AY764417S Pinus taeda isolate 13 4-coumar... 46 0.002
gb|AY764418.1|AY764417S2 Pinus taeda isolate 13 4-coumarate... 46 0.002
gb|AH014207.1|SEG_AY764420S Pinus taeda isolate 28 4-coumar... 46 0.002
gb|AY764421.1|AY764420S2 Pinus taeda isolate 28 4-coumarate... 46 0.002
gb|AH014208.1|SEG_AY764423S Pinus taeda isolate 7 4-coumara... 46 0.002
gb|AY764424.1|AY764423S2 Pinus taeda isolate 7 4-coumarate:... 46 0.002
gb|AH014209.1|SEG_AY764426S Pinus taeda isolate 31 4-coumar... 46 0.002
gb|AY764427.1|AY764426S2 Pinus taeda isolate 31 4-coumarate... 46 0.002
gb|AH014210.1|SEG_AY764429S Pinus taeda isolate 32 4-coumar... 46 0.002
gb|AY764430.1|AY764429S2 Pinus taeda isolate 32 4-coumarate... 46 0.002
gb|AH014211.1|SEG_AY764432S Pinus taeda isolate 25 4-coumar... 46 0.002
gb|AY764433.1|AY764432S2 Pinus taeda isolate 25 4-coumarate... 46 0.002
gb|AH014212.1|SEG_AY764435S Pinus taeda isolate 11 4-coumar... 46 0.002
gb|AY764436.1|AY764435S2 Pinus taeda isolate 11 4-coumarate... 46 0.002
gb|AH014213.1|SEG_AY764438S Pinus taeda isolate 27 4-coumar... 46 0.002
gb|AY764439.1|AY764438S2 Pinus taeda isolate 27 4-coumarate... 46 0.002
gb|AH014214.1|SEG_AY764441S Pinus taeda isolate 8 4-coumara... 46 0.002
gb|AY764442.1|AY764441S2 Pinus taeda isolate 8 4-coumarate:... 46 0.002
gb|AH014215.1|SEG_AY764444S Pinus taeda isolate 26 4-coumar... 46 0.002
gb|AY764445.1|AY764444S2 Pinus taeda isolate 26 4-coumarate... 46 0.002
gb|AH014216.1|SEG_AY764447S Pinus taeda isolate 5 4-coumara... 46 0.002
gb|AY764448.1|AY764447S2 Pinus taeda isolate 5 4-coumarate:... 46 0.002
gb|AH014217.1|SEG_AY764450S Pinus taeda isolate 3 4-coumara... 46 0.002
gb|AY764451.1|AY764450S2 Pinus taeda isolate 3 4-coumarate:... 46 0.002
gb|AH014218.1|SEG_AY764453S Pinus taeda isolate 4 4-coumara... 46 0.002
gb|AY764454.1|AY764453S2 Pinus taeda isolate 4 4-coumarate:... 46 0.002
gb|AH014219.1|SEG_AY764456S Pinus taeda isolate 6 4-coumara... 46 0.002
gb|AY764457.1|AY764456S2 Pinus taeda isolate 6 4-coumarate:... 46 0.002
gb|AH014220.1|SEG_AY764459S Pinus taeda isolate 9 4-coumara... 46 0.002
gb|AY764460.1|AY764459S2 Pinus taeda isolate 9 4-coumarate:... 46 0.002
gb|AH014221.1|SEG_AY764462S Pinus taeda isolate 1 4-coumara... 46 0.002
gb|AY764463.1|AY764462S2 Pinus taeda isolate 1 4-coumarate:... 46 0.002
gb|AH014222.1|SEG_AY764465S Pinus taeda isolate 19 4-coumar... 46 0.002
gb|AY764466.1|AY764465S2 Pinus taeda isolate 19 4-coumarate... 46 0.002
gb|AH014223.1|SEG_AY764468S Pinus taeda isolate 29 4-coumar... 46 0.002
gb|AY764469.1|AY764468S2 Pinus taeda isolate 29 4-coumarate... 46 0.002
gb|AH014224.1|SEG_AY764471S Pinus taeda isolate 18 4-coumar... 46 0.002
gb|AY764472.1|AY764471S2 Pinus taeda isolate 18 4-coumarate... 46 0.002
gb|AH014225.1|SEG_AY764474S Pinus taeda isolate 20 4-coumar... 46 0.002
gb|AY764475.1|AY764474S2 Pinus taeda isolate 20 4-coumarate... 46 0.002
gb|AH014226.1|SEG_AY764477S Pinus taeda isolate 21 4-coumar... 46 0.002
gb|AY764478.1|AY764477S2 Pinus taeda isolate 21 4-coumarate... 46 0.002
gb|AH014227.1|SEG_AY764480S Pinus taeda isolate 12 4-coumar... 46 0.002
gb|AY764481.1|AY764480S2 Pinus taeda isolate 12 4-coumarate... 46 0.002
gb|AH014228.1|SEG_AY764483S Pinus taeda isolate 2 4-coumara... 46 0.002
gb|AY764484.1|AY764483S2 Pinus taeda isolate 2 4-coumarate:... 46 0.002
gb|AH014229.1|SEG_AY764486S Pinus taeda isolate 14 4-coumar... 46 0.002
gb|AY764487.1|AY764486S2 Pinus taeda isolate 14 4-coumarate... 46 0.002
gb|BX251844.1|BX251844 BX251844 Pinus pinaster differenciat... 44 0.007
gb|CF390990.1|CF390990 RTDR3_3_G03.b1_A022 Loblolly pine ro... 44 0.007
gb|CF401087.1|CF401087 RTWW1_10_F02.b1_A015 Well-watered lo... 44 0.007
gb|CF669432.1|CF669432 RTCNT1_43_G10.b1_A029 Root control P... 44 0.007
gb|CF671894.1|CF671894 RTCNT1_60_A12.b1_A029 Root control P... 44 0.007
gb|DR116666.1|DR116666 RTMG1_2_C01.b1_A029 Roots minus magn... 44 0.007
gb|DR116749.1|DR116749 RTMG1_2_C01.g1_A029 Roots minus magn... 44 0.007
gb|DR116646.1|DR116646 RTMG1_2_A01.b1_A029 Roots minus magn... 42 0.027
gb|AY764416.1|AY764414S3 Pinus taeda isolate 30 4-coumarate... 42 0.027
gb|DR161478.1|DR161478 RTFE1_12_B08.b1_A029 Roots minus iro... 38 0.42
>gb|CO367090.1|CO367090 RTK1_32_C09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_C09_A029 3', mRNA sequence
Length = 834
Score = 60.0 bits (30), Expect = 1e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatc 241
||||| || ||||| ||||||||||| || ||||| ||||||| |||||||||||| |
Sbjct: 475 gtcacagaagatgacatcaagcaatttgtggccaaacaggtggtgttctacaagaagctg 534
Query: 242 cacaaggtct 251
||||||||||
Sbjct: 535 cacaaggtct 544
>gb|DR098995.1|DR098995 STRR1_50_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_50_E02_A033 3', mRNA sequence
Length = 601
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 182 gtcaccgaggatgagatcaagcaattcgtcgccaaggaggtggttttctacaagaagatc 241
||||| || ||||| ||||||||||| || ||||| ||||||| || ||||||||| |
Sbjct: 216 gtcacagaagatgacatcaagcaatttgtggccaaacaggtggtgttttacaagaagctg 275
Query: 242 cacaaggtct 251
||||||||||
Sbjct: 276 cacaaggtct 285
>dbj|BD224542.1| Materials and methods for the modification of plant lignin content
Length = 2043
Score = 52.0 bits (26), Expect = 3e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 27 tcatcaagtacaagggcttccaggtgccgccggcggagctggaggc 72
||||||||||||||||||||||||| | ||||| ||||| |||||
Sbjct: 1404 tcatcaagtacaagggcttccaggttgctccggccgagctagaggc 1449
>gb|AI812407.1|AI812407 10A6 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 610
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 73 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 132
Query: 61 ggagctgga 69
||||||||
Sbjct: 133 tgagctgga 141
>gb|AW290167.1|AW290167 NXNV015G05F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015G05 5', mRNA sequence
Length = 553
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 78 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 137
Query: 61 ggagctgga 69
||||||||
Sbjct: 138 tgagctgga 146
>gb|BX253310.1|BX253310 BX253310 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP081A07 similar to 4 coumarate CoA ligase,
mRNA sequence
Length = 680
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 148 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 207
Query: 61 ggagctgga 69
||||||||
Sbjct: 208 tgagctgga 216
>gb|BF010576.1|BF010576 NXCI_086_C09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_086_C09 5' similar to Arabidopsis
thaliana sequence At1g65060 4-coumarate:CoA ligase 3
(4CL3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 234
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 109 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 168
Query: 61 ggagctgga 69
||||||||
Sbjct: 169 tgagctgga 177
>gb|BF169470.1|BF169470 NXCI_123_A06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_123_A06 5' similar to Arabidopsis
thaliana sequence At3g21240 putative 4-coumarate:CoA
ligase 2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 512
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 227 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 286
Query: 61 ggagctgga 69
||||||||
Sbjct: 287 tgagctgga 295
>gb|BF518234.1|BF518234 NXSI_036_F06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_036_F06 5' similar to Arabidopsis thaliana
sequence At3g21240 putative 4-coumarate:CoA ligase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 266 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 325
Query: 61 ggagctgga 69
||||||||
Sbjct: 326 tgagctgga 334
>gb|BG317657.1|BG317657 NXPV_004_C07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus
taeda cDNA clone NXPV_004_C07 5' similar to Arabidopsis
thaliana sequence At3g21240 putative 4-coumarate:CoA
ligase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 552
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 6 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 65
Query: 61 ggagctgga 69
||||||||
Sbjct: 66 tgagctgga 74
>gb|BG526919.1|BG526919 NXPV_057_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_057_D07 5' similar to Arabidopsis
thaliana sequence At3g21240 putative 4-coumarate:CoA
ligase 2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 550
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 174 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 233
Query: 61 ggagctgga 69
||||||||
Sbjct: 234 tgagctgga 242
>gb|BI077306.1|BI077306 NXPV_095_D09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_095_D09 5' similar to Arabidopsis
thaliana sequence At3g21240 putative 4-coumarate:CoA
ligase 2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 482
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 181 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 240
Query: 61 ggagctgga 69
||||||||
Sbjct: 241 tgagctgga 249
>gb|BI643841.1|BI643841 NXPV_123_F05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus
taeda cDNA clone NXPV_123_F05 5' similar to Arabidopsis
thaliana sequence At3g21240 putative 4-coumarate:CoA
ligase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 518
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 6 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 65
Query: 61 ggagctgga 69
||||||||
Sbjct: 66 tgagctgga 74
>gb|BQ698042.1|BQ698042 NXPV_063_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus
taeda cDNA clone NXPV_063_H04 5' similar to Arabidopsis
thaliana sequence At3g21240 putative 4-coumarate:CoA
ligase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 6 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 65
Query: 61 ggagctgga 69
||||||||
Sbjct: 66 tgagctgga 74
>gb|BQ702305.1|BQ702305 NXSI_127_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_127_C04 5' similar to Arabidopsis thaliana
sequence At3g21240 putative 4-coumarate:CoA ligase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 453
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 369 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 428
Query: 61 ggagctgga 69
||||||||
Sbjct: 429 tgagctgga 437
>gb|BQ702559.1|BQ702559 NXSI_130_A02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_130_A02 5' similar to Arabidopsis thaliana
sequence At3g21240 putative 4-coumarate:CoA ligase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 553
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 348 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 407
Query: 61 ggagctgga 69
||||||||
Sbjct: 408 tgagctgga 416
>gb|CD026879.1|CD026879 NXNV015G05 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015G05 5' similar to Arabidopsis thaliana sequence
At1g65060 4-coumarate:CoA ligase 3 (4CL3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 553
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 78 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 137
Query: 61 ggagctgga 69
||||||||
Sbjct: 138 tgagctgga 146
>gb|CF385606.1|CF385606 RTDR1_5_D06.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_5_D06_A015 3', mRNA
sequence
Length = 643
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 108 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 167
Query: 61 ggagctgga 69
||||||||
Sbjct: 168 tgagctgga 176
>gb|CF393502.1|CF393502 RTDR3_13_D03.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_D03_A022 5', mRNA
sequence
Length = 637
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 452 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 511
Query: 61 ggagctgga 69
||||||||
Sbjct: 512 tgagctgga 520
>gb|CF399865.1|CF399865 RTWW1_1_F04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_1_F04_A015 5', mRNA sequence
Length = 728
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 279 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 338
Query: 61 ggagctgga 69
||||||||
Sbjct: 339 tgagctgga 347
>gb|CF401996.1|CF401996 RTWW1_16_D03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_D03_A015 5', mRNA sequence
Length = 718
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 186 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 245
Query: 61 ggagctgga 69
||||||||
Sbjct: 246 tgagctgga 254
>gb|CF402273.1|CF402273 RTWW1_19_G06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_19_G06_A015 5', mRNA sequence
Length = 738
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 332 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 391
Query: 61 ggagctgga 69
||||||||
Sbjct: 392 tgagctgga 400
>gb|CF671298.1|CF671298 RTCNT1_56_D06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_56_D06_A029 3', mRNA sequence
Length = 646
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 111 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 170
Query: 61 ggagctgga 69
||||||||
Sbjct: 171 tgagctgga 179
>gb|BX784216.1|BX784216 BX784216 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130G11 similar to 4-coumarate--CoA ligase (EC
6.2.1.12), mRNA sequence
Length = 707
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 222 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 281
Query: 61 ggagctgga 69
||||||||
Sbjct: 282 tgagctgga 290
>gb|CO159104.1|CO159104 FLD1_11_H06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_11_H06_A029 3', mRNA sequence
Length = 631
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 116 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 175
Query: 61 ggagctgga 69
||||||||
Sbjct: 176 tgagctgga 184
>gb|CO159169.1|CO159169 FLD1_11_H06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_11_H06_A029 5', mRNA sequence
Length = 781
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 253 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 312
Query: 61 ggagctgga 69
||||||||
Sbjct: 313 tgagctgga 321
>gb|CO166419.1|CO166419 FLD1_61_H04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_61_H04_A029 5', mRNA sequence
Length = 843
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 399 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 458
Query: 61 ggagctgga 69
||||||||
Sbjct: 459 tgagctgga 467
Score = 42.1 bits (21), Expect = 0.027
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 197 atcaagcaattcgtcgccaaggaggtggttttctacaagaa 237
|||||| ||||||| || ||| ||||| |||||||||||||
Sbjct: 589 atcaaggaattcgtggcaaagcaggtgattttctacaagaa 629
>gb|CO200758.1|CO200758 RTCNT2_1_G11.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_1_G11_A029 3', mRNA sequence
Length = 675
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 147 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 206
Query: 61 ggagctgga 69
||||||||
Sbjct: 207 tgagctgga 215
>gb|CO200836.1|CO200836 RTCNT2_1_G11.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_1_G11_A029 5', mRNA sequence
Length = 674
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 127 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 186
Query: 61 ggagctgga 69
||||||||
Sbjct: 187 tgagctgga 195
>gb|CO201630.1|CO201630 RTCNT2_7_C08.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_C08_A029 3', mRNA sequence
Length = 852
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 293 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 352
Query: 61 ggagctgga 69
||||||||
Sbjct: 353 tgagctgga 361
>gb|CO201703.1|CO201703 RTCNT2_7_C08.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_C08_A029 5', mRNA sequence
Length = 845
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 373 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 432
Query: 61 ggagctgga 69
||||||||
Sbjct: 433 tgagctgga 441
>gb|CO362045.1|CO362045 NDL2_8_G01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_G01_A029 5', mRNA sequence
Length = 749
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 541 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 482
Query: 61 ggagctgga 69
||||||||
Sbjct: 481 tgagctgga 473
Score = 42.1 bits (21), Expect = 0.027
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 197 atcaagcaattcgtcgccaaggaggtggttttctacaagaa 237
|||||| ||||||| || ||| ||||| |||||||||||||
Sbjct: 351 atcaaggaattcgtggcaaagcaggtgattttctacaagaa 311
>gb|CV032697.1|CV032697 RTNACL1_17_F12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_17_F12_A029 5', mRNA sequence
Length = 733
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 533 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 474
Query: 61 ggagctgga 69
||||||||
Sbjct: 473 tgagctgga 465
Score = 42.1 bits (21), Expect = 0.027
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 197 atcaagcaattcgtcgccaaggaggtggttttctacaagaa 237
|||||| ||||||| || ||| ||||| |||||||||||||
Sbjct: 343 atcaaggaattcgtggcaaagcaggtgattttctacaagaa 303
>gb|CX714585.1|CX714585 RTPQ1_23_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_23_E02_A032 5', mRNA sequence
Length = 523
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 315 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 374
Query: 61 ggagctgga 69
||||||||
Sbjct: 375 tgagctgga 383
>gb|DR018039.1|DR018039 STRS1_20_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_D02_A034 3', mRNA sequence
Length = 731
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 118 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 59
Query: 61 ggagctgga 69
||||||||
Sbjct: 58 tgagctgga 50
>gb|DR019194.1|DR019194 STRS1_28_H10.b2_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_H10_A034 3', mRNA sequence
Length = 836
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 303 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 362
Query: 61 ggagctgga 69
||||||||
Sbjct: 363 tgagctgga 371
>gb|DR019282.1|DR019282 STRS1_28_H10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_H10_A034 5', mRNA sequence
Length = 791
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 489 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 548
Query: 61 ggagctgga 69
||||||||
Sbjct: 549 tgagctgga 557
>gb|DR049100.1|DR049100 RTBOR1_13_H01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_13_H01_A029 3', mRNA sequence
Length = 608
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 49 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 108
Query: 61 ggagctgga 69
||||||||
Sbjct: 109 tgagctgga 117
>gb|DR055128.1|DR055128 RTCA1_21_E12.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_21_E12_A029 5', mRNA sequence
Length = 625
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 343 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 402
Query: 61 ggagctgga 69
||||||||
Sbjct: 403 tgagctgga 411
Score = 42.1 bits (21), Expect = 0.027
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 197 atcaagcaattcgtcgccaaggaggtggttttctacaagaa 237
|||||| ||||||| || ||| ||||| |||||||||||||
Sbjct: 533 atcaaggaattcgtggcaaagcaggtgattttctacaagaa 573
>gb|DR069800.1|DR069800 RTDK1_9_B09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_9_B09_A029 5', mRNA sequence
Length = 854
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 291 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 350
Query: 61 ggagctgga 69
||||||||
Sbjct: 351 tgagctgga 359
>gb|DR071752.1|DR071752 RTDK1_21_H05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_H05_A029 5', mRNA sequence
Length = 679
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 409 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 468
Query: 61 ggagctgga 69
||||||||
Sbjct: 469 tgagctgga 477
>gb|DR092921.1|DR092921 STRR1_5_A01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_A01_A033 3', mRNA sequence
Length = 858
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 331 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 390
Query: 61 ggagctgga 69
||||||||
Sbjct: 391 tgagctgga 399
>gb|DR092999.1|DR092999 STRR1_5_A01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_A01_A033 5', mRNA sequence
Length = 920
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 450 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 509
Query: 61 ggagctgga 69
||||||||
Sbjct: 510 tgagctgga 518
>gb|DR096367.1|DR096367 STRR1_27_C01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_C01_A033 5', mRNA sequence
Length = 600
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 485 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 426
Query: 61 ggagctgga 69
||||||||
Sbjct: 425 tgagctgga 417
Score = 42.1 bits (21), Expect = 0.027
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 197 atcaagcaattcgtcgccaaggaggtggttttctacaagaa 237
|||||| ||||||| || ||| ||||| |||||||||||||
Sbjct: 295 atcaaggaattcgtggcaaagcaggtgattttctacaagaa 255
>gb|DR101893.1|DR101893 STRR1_76_C02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_C02_A033 5', mRNA sequence
Length = 664
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 466 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 407
Query: 61 ggagctgga 69
||||||||
Sbjct: 406 tgagctgga 398
>gb|DR101975.1|DR101975 STRR1_77_E04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_77_E04_A033 3', mRNA sequence
Length = 784
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 247 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 306
Query: 61 ggagctgga 69
||||||||
Sbjct: 307 tgagctgga 315
>gb|DR102397.1|DR102397 STRR1_80_G02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_80_G02_A033 5', mRNA sequence
Length = 467
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 460 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 401
Query: 61 ggagctgga 69
||||||||
Sbjct: 400 tgagctgga 392
>gb|DR116726.1|DR116726 RTMG1_2_A01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_A01_A029 5', mRNA sequence
Length = 753
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 307 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 366
Query: 61 ggagctgga 69
||||||||
Sbjct: 367 tgagctgga 375
>gb|DR386037.1|DR386037 RTHG1_12_B08.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_B08_A029 5', mRNA sequence
Length = 864
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 49 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 108
Query: 61 ggagctgga 69
||||||||
Sbjct: 109 tgagctgga 117
>gb|DR743998.1|DR743998 RTCU1_19_C05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_C05_A029 5', mRNA sequence
Length = 654
Score = 50.1 bits (25), Expect = 1e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1 cttcatcgtcgacaggctcaaggagatcatcaagtacaagggcttccaggtgccgccggc 60
|||||| |||||||| | |||||||| ||||| || ||||||||||||||| | || ||
Sbjct: 530 cttcatagtcgacagagtaaaggagattatcaaatataagggcttccaggtggctcctgc 471
Query: 61 ggagctgga 69
||||||||
Sbjct: 470 tgagctgga 462
Score = 42.1 bits (21), Expect = 0.027
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 197 atcaagcaattcgtcgccaaggaggtggttttctacaagaa 237
|||||| ||||||| || ||| ||||| |||||||||||||
Sbjct: 340 atcaaggaattcgtggcaaagcaggtgattttctacaagaa 300
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,865
Number of Sequences: 355925
Number of extensions: 63865
Number of successful extensions: 17124
Number of sequences better than 0.5: 136
Number of HSP's better than 0.5 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16875
Number of HSP's gapped (non-prelim): 249
length of query: 638
length of database: 217,277,237
effective HSP length: 19
effective length of query: 619
effective length of database: 210,514,662
effective search space: 130308575778
effective search space used: 130308575778
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)