BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071507.2.1
(921 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR049068.1|DR049068 RTBOR1_13_C05.b1_A029 Roots plus add... 52 4e-005
gb|CF395670.1|CF395670 RTDS2_16_G12.g1_A021 Drought-stresse... 50 2e-004
gb|CF473030.1|CF473030 RTDS1_1_F04.b1_A015 Drought-stressed... 50 2e-004
gb|CF473352.1|CF473352 RTWW2_2_B10.b1_A021 Well-watered lob... 50 2e-004
gb|CF664091.1|CF664091 RTCNT1_7_F10.b1_A029 Root control Pi... 50 2e-004
gb|CO170743.1|CO170743 NDL1_16_C08.g1_A029 Needles control ... 50 2e-004
gb|CO363561.1|CO363561 RTK1_10_B03.g1_A029 Roots minus pota... 50 2e-004
gb|CO370352.1|CO370352 RTK1_67_G06.b1_A029 Roots minus pota... 50 2e-004
gb|CX650044.1|CX650044 COLD1_43_E01.b1_A029 Root cold Pinus... 50 2e-004
gb|CX650124.1|CX650124 COLD1_43_E01.g1_A029 Root cold Pinus... 50 2e-004
gb|CX651460.1|CX651460 COLD1_52_C03.g1_A029 Root cold Pinus... 50 2e-004
gb|CX652455.1|CX652455 COLD1_59_E05.b1_A029 Root cold Pinus... 50 2e-004
gb|DR025056.1|DR025056 STRS1_69_G05.b1_A034 Shoot tip pitch... 50 2e-004
gb|DR025137.1|DR025137 STRS1_69_G05.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR025430.1|DR025430 STRS1_71_C07.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR070252.1|DR070252 RTDK1_12_E08.b1_A029 Roots, dark Pin... 50 2e-004
gb|DR077972.1|DR077972 RTFEPL1_1_D02.b1_A029 Roots plus add... 50 2e-004
gb|DR088926.1|DR088926 RTAL1_5_B08.g1_A029 Roots plus added... 50 2e-004
gb|DR090907.1|DR090907 RTAL1_18_D05.b1_A029 Roots plus adde... 50 2e-004
gb|DR097036.1|DR097036 STRR1_32_C01.b1_A033 Stem Response R... 50 2e-004
gb|DR099061.1|DR099061 STRR1_52_H04.b1_A033 Stem Response R... 50 2e-004
gb|DR745959.1|DR745959 RTCU1_33_E11.g1_A029 Roots plus adde... 50 2e-004
gb|U62394.1|PRU62394 Pinus radiata cinnamyl alcohol dehydro... 50 2e-004
gb|AF060491.1|AF060491 Pinus radiata cinnamyl alcohol dehyd... 50 2e-004
dbj|BD224283.1| Materials and methods for the modification ... 50 2e-004
dbj|BD224347.1| Materials and methods for the modification ... 50 2e-004
dbj|BD224371.1| Materials and methods for the modification ... 50 2e-004
dbj|BD224569.1| Materials and methods for the modification ... 50 2e-004
dbj|BD273009.1| Materials and methods for the modification ... 50 2e-004
emb|Z37991.1|PTCADAMR P.taeda mRNA for cinnamyl alcohol deh... 50 2e-004
gb|BE187291.1|BE187291 NXNV_162_B03_F Nsf Xylem Normal wood... 42 0.040
gb|CF392305.1|CF392305 RTDR3_7_H05.b1_A022 Loblolly pine ro... 42 0.040
gb|CF397221.1|CF397221 RTDS3_2_G11.b2_A022 Drought-stressed... 42 0.040
gb|CF399665.1|CF399665 RTDS3_25_F09.b1_A022 Drought-stresse... 42 0.040
gb|CO173787.1|CO173787 NDL1_39_G03.b1_A029 Needles control ... 42 0.040
gb|CO173851.1|CO173851 NDL1_39_G03.g1_A029 Needles control ... 42 0.040
gb|CO368027.1|CO368027 RTK1_38_E04.b1_A029 Roots minus pota... 42 0.040
gb|CO368110.1|CO368110 RTK1_38_E04.g1_A029 Roots minus pota... 42 0.040
gb|CV035326.1|CV035326 RTNACL1_15_G05.b1_A029 Roots plus ad... 42 0.040
gb|CV035439.1|CV035439 RTNACL1_16_D03.b1_A029 Roots plus ad... 42 0.040
gb|CV035516.1|CV035516 RTNACL1_16_D03.g1_A029 Roots plus ad... 42 0.040
emb|Z37992.1|PTCADBMR P.taeda mRNA for cinnamyl alcohol deh... 42 0.040
>gb|DR049068.1|DR049068 RTBOR1_13_C05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_13_C05_A029 3', mRNA sequence
Length = 345
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtccat 288
||||| ||||||||||| | || |||||||||||||||| |||||||||
Sbjct: 67 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtccat 18
>gb|CF395670.1|CF395670 RTDS2_16_G12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_G12_A021 5', mRNA sequence
Length = 724
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 720 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 672
>gb|CF473030.1|CF473030 RTDS1_1_F04.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_F04_A015 3', mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 339 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 291
>gb|CF473352.1|CF473352 RTWW2_2_B10.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_2_B10_A021 3', mRNA sequence
Length = 631
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 355 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 307
>gb|CF664091.1|CF664091 RTCNT1_7_F10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_7_F10_A029 3', mRNA sequence
Length = 766
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 429 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 381
>gb|CO170743.1|CO170743 NDL1_16_C08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_16_C08_A029 5', mRNA sequence
Length = 755
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 241 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 289
>gb|CO363561.1|CO363561 RTK1_10_B03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_10_B03_A029 5', mRNA sequence
Length = 806
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 250 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 298
>gb|CO370352.1|CO370352 RTK1_67_G06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_G06_A029 3', mRNA sequence
Length = 711
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 430 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 382
>gb|CX650044.1|CX650044 COLD1_43_E01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_E01_A029 3', mRNA sequence
Length = 845
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 564 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 516
>gb|CX650124.1|CX650124 COLD1_43_E01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_E01_A029 5', mRNA sequence
Length = 861
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 780 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 732
>gb|CX651460.1|CX651460 COLD1_52_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_C03_A029 5', mRNA sequence
Length = 635
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 281 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 329
>gb|CX652455.1|CX652455 COLD1_59_E05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_E05_A029 3', mRNA sequence
Length = 592
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 287 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 239
>gb|DR025056.1|DR025056 STRS1_69_G05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G05_A034 3', mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 322 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 274
>gb|DR025137.1|DR025137 STRS1_69_G05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G05_A034 5', mRNA sequence
Length = 617
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 285 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 237
>gb|DR025430.1|DR025430 STRS1_71_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_C07_A034 5', mRNA sequence
Length = 720
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 260 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 308
>gb|DR070252.1|DR070252 RTDK1_12_E08.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_E08_A029 3', mRNA sequence
Length = 645
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 336 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 288
>gb|DR077972.1|DR077972 RTFEPL1_1_D02.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_1_D02_A029 3', mRNA sequence
Length = 786
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 383 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 335
>gb|DR088926.1|DR088926 RTAL1_5_B08.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_B08_A029 5', mRNA sequence
Length = 771
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 490 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 442
>gb|DR090907.1|DR090907 RTAL1_18_D05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_18_D05_A029 3', mRNA sequence
Length = 643
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 339 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 291
>gb|DR097036.1|DR097036 STRR1_32_C01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_C01_A033 3', mRNA sequence
Length = 848
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 563 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 515
>gb|DR099061.1|DR099061 STRR1_52_H04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_52_H04_A033 3', mRNA sequence
Length = 716
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 413 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 365
>gb|DR745959.1|DR745959 RTCU1_33_E11.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_33_E11_A029 5', mRNA sequence
Length = 728
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 439 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 391
>gb|U62394.1|PRU62394 Pinus radiata cinnamyl alcohol dehydrogenase (CAD) mRNA, complete cds
Length = 1397
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 1110 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 1062
>gb|AF060491.1|AF060491 Pinus radiata cinnamyl alcohol dehydrogenase (CAD) gene, complete cds
Length = 3540
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 3348 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 3300
>dbj|BD224283.1| Materials and methods for the modification of plant lignin content
Length = 1454
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 1106 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 1058
>dbj|BD224347.1| Materials and methods for the modification of plant lignin content
Length = 1474
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 1126 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 1078
>dbj|BD224371.1| Materials and methods for the modification of plant lignin content
Length = 1460
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 1112 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 1064
>dbj|BD224569.1| Materials and methods for the modification of plant lignin content
Length = 1474
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 1126 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 1078
>dbj|BD273009.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 1474
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 1126 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 1078
>emb|Z37991.1|PTCADAMR P.taeda mRNA for cinnamyl alcohol dehydrogenase
Length = 1406
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || |||||||||||||||| ||||||||
Sbjct: 1104 cggacatcgttcttctccaacctttccatggccgtgttgatgtagtcca 1056
>gb|BE187291.1|BE187291 NXNV_162_B03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_B03 5' similar to Arabidopsis thaliana
sequence At4g34230 cinnamyl alcohol dehydrogenase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 490
Score = 42.1 bits (21), Expect = 0.040
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || | |||||||||||||| ||||||||
Sbjct: 241 cggacatcgttcttctccaaccttttcatggccgtgttgatgtagtcca 193
>gb|CF392305.1|CF392305 RTDR3_7_H05.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_H05_A022 3', mRNA
sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.040
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || | |||||||||||||| ||||||||
Sbjct: 224 cggacatcgttcttctccaaccttttcatggccgtgttgatgtagtcca 176
>gb|CF397221.1|CF397221 RTDS3_2_G11.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_G11_A022 3', mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.040
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || | |||||||||||||| ||||||||
Sbjct: 335 cggacatcgttcttctccaaccttttcatggccgtgttgatgtagtcca 287
>gb|CF399665.1|CF399665 RTDS3_25_F09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_25_F09_A022 3', mRNA sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.040
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || | |||||||||||||| ||||||||
Sbjct: 400 cggacatcgttcttctccaaccttttcatggccgtgttgatgtagtcca 352
>gb|CO173787.1|CO173787 NDL1_39_G03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_39_G03_A029 3', mRNA sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 263 tccatggccgtgttgacgtagtcca 287
|||||||||||||||| ||||||||
Sbjct: 199 tccatggccgtgttgatgtagtcca 175
>gb|CO173851.1|CO173851 NDL1_39_G03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_39_G03_A029 5', mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 263 tccatggccgtgttgacgtagtcca 287
|||||||||||||||| ||||||||
Sbjct: 165 tccatggccgtgttgatgtagtcca 141
>gb|CO368027.1|CO368027 RTK1_38_E04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_38_E04_A029 3', mRNA sequence
Length = 825
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 263 tccatggccgtgttgacgtagtcca 287
|||||||||||||||| ||||||||
Sbjct: 519 tccatggccgtgttgatgtagtcca 495
>gb|CO368110.1|CO368110 RTK1_38_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_38_E04_A029 5', mRNA sequence
Length = 879
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 263 tccatggccgtgttgacgtagtcca 287
|||||||||||||||| ||||||||
Sbjct: 697 tccatggccgtgttgatgtagtcca 673
>gb|CV035326.1|CV035326 RTNACL1_15_G05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_15_G05_A029 3', mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 263 tccatggccgtgttgacgtagtcca 287
|||||||||||||||| ||||||||
Sbjct: 454 tccatggccgtgttgatgtagtcca 430
>gb|CV035439.1|CV035439 RTNACL1_16_D03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_16_D03_A029 3', mRNA sequence
Length = 851
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 263 tccatggccgtgttgacgtagtcca 287
|||||||||||||||| ||||||||
Sbjct: 520 tccatggccgtgttgatgtagtcca 496
>gb|CV035516.1|CV035516 RTNACL1_16_D03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_16_D03_A029 5', mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 263 tccatggccgtgttgacgtagtcca 287
|||||||||||||||| ||||||||
Sbjct: 801 tccatggccgtgttgatgtagtcca 777
>emb|Z37992.1|PTCADBMR P.taeda mRNA for cinnamyl alcohol dehydrogenase
Length = 1355
Score = 42.1 bits (21), Expect = 0.040
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 239 cggacgtcgttcttctcgagccgctccatggccgtgttgacgtagtcca 287
||||| ||||||||||| | || | |||||||||||||| ||||||||
Sbjct: 1056 cggacatcgttcttctccaaccttttcatggccgtgttgatgtagtcca 1008
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,203
Number of Sequences: 355925
Number of extensions: 84203
Number of successful extensions: 26941
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26899
Number of HSP's gapped (non-prelim): 42
length of query: 921
length of database: 217,277,237
effective HSP length: 19
effective length of query: 902
effective length of database: 210,514,662
effective search space: 189884225124
effective search space used: 189884225124
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)