BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3062418.2.1
(851 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip libra... 56 2e-006
gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clon... 56 2e-006
gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control P... 56 2e-006
gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus... 56 2e-006
gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C fo... 56 2e-006
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 56 2e-006
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 56 2e-006
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 56 2e-006
gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch... 56 2e-006
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 56 2e-006
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 56 2e-006
gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus cal... 56 2e-006
gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus cal... 56 2e-006
gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus adde... 56 2e-006
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 56 2e-006
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 56 2e-006
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 56 2e-006
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 56 2e-006
gb|AW010487.1|AW010487 ST07D06 Pine TriplEx shoot tip libra... 48 6e-004
>gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54D07, mRNA sequence
Length = 432
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 360 agcggctcaaagatcaagggatttccatattggatggttt 399
>gb|BX681734.1|BX681734 BX681734 RS Pinus pinaster cDNA clone RS63F06, mRNA sequence
Length = 620
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 265 agcggctcaaagatcaagggatttccatattggatggttt 304
>gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_C03_A029 3', mRNA sequence
Length = 795
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 495 agcggctcaaagatcaagggatttccatattggatggttt 456
>gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 5', mRNA sequence
Length = 588
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 193 agcggctcaaagatcaagggatttccatattggatggttt 232
>gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 5', mRNA sequence
Length = 726
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 484 agcggctcaaagatcaagggatttccatattggatggttt 523
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 776 agcggctcaaagatcaagggatttccatattggatggttt 737
>gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch canker susceptible Pinus
taeda cDNA clone STRS1_31_H11_A034 3', mRNA sequence
Length = 794
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 13 agcggctcaaagatcaagggatttccatattggatggttt 52
>gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 5', mRNA sequence
Length = 756
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 748 agcggctcaaagatcaagggatttccatattggatggttt 709
>gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 5', mRNA sequence
Length = 739
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 501 agcggctcaaagatcaagggatttccatattggatggttt 540
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 84 agcggctcaaagatcaagggatttccatattggatggttt 123
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 225 agcggctcaaagatcaagggatttccatattggatggttt 264
>gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G02_A029 5', mRNA sequence
Length = 784
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 687 agcggctcaaagatcaagggatttccatattggatggttt 726
>gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 3', mRNA sequence
Length = 696
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 272 agcggctcaaagatcaagggatttccatattggatggttt 233
>gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_A01_A029 5', mRNA sequence
Length = 788
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 514 agcggctcaaagatcaagggatttccatattggatggttt 553
>gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_E06_A033 5', mRNA sequence
Length = 788
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 765 agcggctcaaagatcaagggatttccatattggatggttt 726
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 484 agcggctcaaagatcaagggatttccatattggatggttt 445
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 724 agcggctcaaagatcaagggatttccatattggatggttt 685
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| |||||||||||||| |||| ||||||
Sbjct: 95 agcggctcaaagatcaagggatttccatattggatggttt 134
>gb|AW010487.1|AW010487 ST07D06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST07D06, mRNA sequence
Length = 811
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 22 agcggctcaaagagcaagggatttccatgttggttggttt 61
||||||||||||| ||| |||||||||| |||| ||||||
Sbjct: 10 agcggctcaaagatcaaaggatttccatattggatggttt 49
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,488
Number of Sequences: 355925
Number of extensions: 77488
Number of successful extensions: 21709
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21666
Number of HSP's gapped (non-prelim): 43
length of query: 851
length of database: 217,277,237
effective HSP length: 19
effective length of query: 832
effective length of database: 210,514,662
effective search space: 175148198784
effective search space used: 175148198784
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)