BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042304.2.1
(805 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE496383.1|BE496383 NXCI_017_A02_F NXCI (Nsf Xylem Compr... 78 6e-013
gb|CO367783.1|CO367783 RTK1_36_C12.g1_A029 Roots minus pota... 78 6e-013
gb|DR684166.1|DR684166 EST1074243 Normalized pine embryo li... 62 4e-008
gb|DR081469.1|DR081469 RTFEPL1_29_G11.g1_A029 Roots plus ad... 58 6e-007
gb|BX255109.1|BX255109 BX255109 Pinus pinaster differenciat... 48 6e-004
gb|BX253417.1|BX253417 BX253417 Pinus pinaster differenciat... 48 6e-004
gb|BE644028.1|BE644028 NXCI_053_G03_F NXCI (Nsf Xylem Compr... 48 6e-004
gb|BF186163.1|BF186163 NXCI_133_G06_F NXCI (Nsf Xylem Compr... 48 6e-004
gb|BF518118.1|BF518118 NXSI_035_C02_F NXSI (Nsf Xylem Side ... 48 6e-004
gb|BF610263.1|BF610263 NXSI_057_B05_F NXSI (Nsf Xylem Side ... 48 6e-004
gb|BQ654839.1|BQ654839 NXRV086_D03_F NXRV (Nsf Xylem Root w... 48 6e-004
gb|BX676890.1|BX676890 BX676890 RN Pinus pinaster cDNA clon... 48 6e-004
gb|CO162913.1|CO162913 FLD1_38_G02.b1_A029 Root flooded Pin... 48 6e-004
gb|CO166920.1|CO166920 FLD1_65_A12.g1_A029 Root flooded Pin... 48 6e-004
gb|CO169434.1|CO169434 NDL1_7_B11.b1_A029 Needles control P... 48 6e-004
gb|CO169507.1|CO169507 NDL1_7_B11.g1_A029 Needles control P... 48 6e-004
gb|CV033876.1|CV033876 RTNACL1_37_D08.b1_A029 Roots plus ad... 48 6e-004
gb|CX650237.1|CX650237 COLD1_44_H04.b1_A029 Root cold Pinus... 48 6e-004
gb|DR055465.1|DR055465 RTCA1_23_G10.g2_A029 Roots minus cal... 48 6e-004
>gb|BE496383.1|BE496383 NXCI_017_A02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_A02 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 567
Score = 77.8 bits (39), Expect = 6e-013
Identities = 123/152 (80%)
Strand = Plus / Plus
Query: 54 gcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagt 113
|||||||| |||||||||||||| || | |||||||| || |||||||||||||| ||
Sbjct: 65 gcacgtatattcaacacatatggacccagaatgtgcatcgatgatggccgtgttgttagc 124
Query: 114 taantcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaa 173
| | ||||||||||||||| || || || ||||| ||||||||||| || || |||
Sbjct: 125 aactttgttgctcaggcactgcgcaaagaacctttgacagtttatggtgacggtaaacaa 184
Query: 174 accaggagtttccaatatgtttctgatctggt 205
|| |||| || || |||||||||||| ||||
Sbjct: 185 acacggagctttcagtatgtttctgatttggt 216
>gb|CO367783.1|CO367783 RTK1_36_C12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_C12_A029 5', mRNA sequence
Length = 792
Score = 77.8 bits (39), Expect = 6e-013
Identities = 123/152 (80%)
Strand = Plus / Plus
Query: 54 gcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagt 113
|||||||| |||||||||||||| || | |||||||| || |||||||||||||| ||
Sbjct: 209 gcacgtatattcaacacatatggacccagaatgtgcatcgatgatggccgtgttgttagc 268
Query: 114 taantcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaa 173
| | ||||||||||||||| || || || ||||| ||||||||||| || || |||
Sbjct: 269 aactttgttgctcaggcactgcgcaaagaacctttgacagtttatggtgacggtaaacaa 328
Query: 174 accaggagtttccaatatgtttctgatctggt 205
|| |||| || || |||||||||||| ||||
Sbjct: 329 acacggagctttcagtatgtttctgatttggt 360
>gb|DR684166.1|DR684166 EST1074243 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP61 3' end, mRNA sequence
Length = 736
Score = 61.9 bits (31), Expect = 4e-008
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 54 gcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagt 113
|||||||| |||||||||||||| || | |||||||| || |||| ||||||||| ||
Sbjct: 290 gcacgtatattcaacacatatggacccagaatgtgcatcgatgatgaccgtgttgttagc 349
Query: 114 taantcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaa 173
| | ||||||||||||||| || || || ||||| ||||||||||| || || |||
Sbjct: 350 aactttgttgctcaggcactgcgcaaagaacctttgacagtttatggtgacggtaaacaa 409
Query: 174 accaggagtttccaatatgtttctgatctggt 205
|| | || || || |||||||||||| ||||
Sbjct: 410 acacgtagctttcagtatgtttctgatttggt 441
>gb|DR081469.1|DR081469 RTFEPL1_29_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_29_G11_A029 5', mRNA sequence
Length = 667
Score = 58.0 bits (29), Expect = 6e-007
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 84 atgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaangag 143
|||||||| || |||||||||||||| || | | ||||||||||||||| || ||
Sbjct: 17 atgtgcatcgatgatggccgtgttgttagcaactttgttgctcaggcactgcgcaaagaa 76
Query: 144 ccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctg 203
|| ||||| ||||||||||| || || ||||| |||| || || |||||||||||| ||
Sbjct: 77 cctttgacagtttatggtgacggtaaacaaacacggagctttcagtatgtttctgatttg 136
Query: 204 gt 205
||
Sbjct: 137 gt 138
>gb|BX255109.1|BX255109 BX255109 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP111A06 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 473
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 212 cattgacgatggccgtgttgtcag 235
>gb|BX253417.1|BX253417 BX253417 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083C06a, mRNA sequence
Length = 317
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 179 cattgacgatggccgtgttgtcag 202
>gb|BE644028.1|BE644028 NXCI_053_G03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_053_G03 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 80 cattgacgatggccgtgttgtcag 103
>gb|BF186163.1|BF186163 NXCI_133_G06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_133_G06 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 80 cattgacgatggccgtgttgtcag 103
>gb|BF518118.1|BF518118 NXSI_035_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_C02 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 338
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 59 cattgacgatggccgtgttgtcag 82
>gb|BF610263.1|BF610263 NXSI_057_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_057_B05 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 338
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 59 cattgacgatggccgtgttgtcag 82
>gb|BQ654839.1|BQ654839 NXRV086_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV086_D03 5' similar to Arabidopsis thaliana
sequence At3g62830 dTDP-glucose 4-6-dehydratase homolog
D18 see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 694
Score = 48.1 bits (24), Expect = 6e-004
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||||||||||||| || || || ||||| ||||||||||| || || ||||| ||
Sbjct: 16 gttgctcaggcactgcgcaaagaacctttgacagtttatggtgacggtaaacaaacacgg 75
Query: 180 agtttccaatatgtttctgatctggt 205
|| || || |||||||||||| ||||
Sbjct: 76 agctttcagtatgtttctgatttggt 101
>gb|BX676890.1|BX676890 BX676890 RN Pinus pinaster cDNA clone RN13E08, mRNA sequence
Length = 520
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 456 cattgacgatggccgtgttgtcag 479
>gb|CO162913.1|CO162913 FLD1_38_G02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_G02_A029 3', mRNA sequence
Length = 870
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 278 cattgacgatggccgtgttgtcag 301
>gb|CO166920.1|CO166920 FLD1_65_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_65_A12_A029 5', mRNA sequence
Length = 794
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 416 cattgacgatggccgtgttgtcag 439
>gb|CO169434.1|CO169434 NDL1_7_B11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_B11_A029 3', mRNA sequence
Length = 729
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 156 cattgacgatggccgtgttgtcag 179
>gb|CO169507.1|CO169507 NDL1_7_B11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_B11_A029 5', mRNA sequence
Length = 801
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 661 cattgacgatggccgtgttgtcag 684
>gb|CV033876.1|CV033876 RTNACL1_37_D08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_37_D08_A029 3', mRNA sequence
Length = 855
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 120 cattgacgatggccgtgttgtcag 143
>gb|CX650237.1|CX650237 COLD1_44_H04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_H04_A029 3', mRNA sequence
Length = 791
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 192 cattgacgatggccgtgttgtcag 215
>gb|DR055465.1|DR055465 RTCA1_23_G10.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_23_G10_A029 5', mRNA sequence
Length = 637
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 89 cattgacgatggccgtgttgtcag 112
||||||||||||||||||||||||
Sbjct: 581 cattgacgatggccgtgttgtcag 558
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,827
Number of Sequences: 355925
Number of extensions: 65827
Number of successful extensions: 16956
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16920
Number of HSP's gapped (non-prelim): 32
length of query: 805
length of database: 217,277,237
effective HSP length: 19
effective length of query: 786
effective length of database: 210,514,662
effective search space: 165464524332
effective search space used: 165464524332
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)