BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 80 1e-013
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 80 1e-013
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 70 1e-010
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 52 3e-005
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 48 4e-004
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 48 4e-004
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 48 4e-004
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 48 4e-004
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 48 4e-004
gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response R... 48 4e-004
gb|AW064929.1|AW064929 ST37E11 Pine TriplEx shoot tip libra... 42 0.027
gb|DR048883.1|DR048883 RTBOR1_11_H06.g1_A029 Roots plus add... 42 0.027
gb|DR091250.1|DR091250 RTAL1_20_G12.b1_A029 Roots plus adde... 42 0.027
gb|DR681936.1|DR681936 EST1072011 Normalized pine embryo li... 42 0.027
gb|DR684165.1|DR684165 EST1074242 Normalized pine embryo li... 42 0.027
gb|DR692332.1|DR692332 EST1082420 Normalized pine embryo li... 42 0.027
gb|DT631738.1|DT631738 EST1146669 Normalized pine embryo li... 42 0.027
gb|DT637209.1|DT637209 EST1152140 Normalized pine embryo li... 42 0.027
gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus pota... 40 0.11
gb|DR069603.1|DR069603 RTDK1_8_F06.b1_A029 Roots, dark Pinu... 40 0.11
gb|DR069679.1|DR069679 RTDK1_8_F06.g1_A029 Roots, dark Pinu... 40 0.11
gb|DR093250.1|DR093250 STRR1_7_C02.b1_A033 Stem Response Re... 38 0.42
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 79.8 bits (40), Expect = 1e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| || ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 240 gagtttgatttctacctttgcagtcatgctggtattcagggaacaagcaggccagctcat 299
Query: 61 taccatgtcctctgggatga 80
|| ||||| || ||||||||
Sbjct: 300 tatcatgttctgtgggatga 319
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 79.8 bits (40), Expect = 1e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| || ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 199 gagtttgatttctacctttgcagtcatgctggtattcagggaacaagcaggccagctcat 258
Query: 61 taccatgtcctctgggatga 80
|| ||||| || ||||||||
Sbjct: 259 tatcatgttctgtgggatga 278
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 69.9 bits (35), Expect = 1e-010
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 14 acctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctct 73
||||||| || |||||||| ||||||||||| |||||||| || || || ||||| || |
Sbjct: 382 acctctgcagccatgctggtatccagggaactagtaggcctgcccattatcatgtncttt 441
Query: 74 gggatgagaacaatttcacagc 95
||||||| ||||| ||||||||
Sbjct: 442 gggatgaaaacaaattcacagc 463
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 7 gatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccat 66
||||||||||| || ||||||||||| || || |||||||| | ||| ||||| || |||
Sbjct: 389 gatttctacctttgcagtcatgctggtattcatggaacaagcacgccagctcattatcat 448
Query: 67 gtcctctgggatga 80
|| || ||||||||
Sbjct: 449 gttctgtgggatga 462
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| ||||||||||| |||| || |||| ||| ||||||||| |||| ||| |
Sbjct: 235 ctctgtagccatgctggaataaagggcactagtaagccagctcactacaatgtactccag 294
Query: 76 gatgagaa 83
||||||||
Sbjct: 295 gatgagaa 302
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| ||||||||||| |||| || |||| ||| ||||||||| |||| ||| |
Sbjct: 181 ctctgtagccatgctggaataaagggcactagtaagccagctcactacaatgtactccag 240
Query: 76 gatgagaa 83
||||||||
Sbjct: 241 gatgagaa 248
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| ||||||||||| |||| || |||| ||| ||||||||| |||| ||| |
Sbjct: 464 ctctgtagccatgctggaataaagggcactagtaagccagctcactacaatgtactccag 523
Query: 76 gatgagaa 83
||||||||
Sbjct: 524 gatgagaa 531
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| ||||||||||| |||| || |||| ||| ||||||||| |||| ||| |
Sbjct: 264 ctctgtagccatgctggaataaagggcactagtaagccagctcactacaatgtactccag 323
Query: 76 gatgagaa 83
||||||||
Sbjct: 324 gatgagaa 331
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 48.1 bits (24), Expect = 4e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 16 ctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgg 75
|||||||| ||||||||||| |||| || |||| ||| ||||||||| |||| ||| |
Sbjct: 533 ctctgtagccatgctggaataaagggcactagtaagccagctcactacaatgtactccag 474
Query: 76 gatgagaa 83
||||||||
Sbjct: 473 gatgagaa 466
>gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 5', mRNA sequence
Length = 870
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
||||||||||||||||| || |||||||||||
Sbjct: 836 gagtttgatttctacctttgcagtcatgctgg 867
>gb|AW064929.1|AW064929 ST37E11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST37E11, mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 185 cgtcgaagagctccaatggca 165
>gb|DR048883.1|DR048883 RTBOR1_11_H06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_11_H06_A029 5', mRNA sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 212 cgtcgaagagctccaatggca 192
>gb|DR091250.1|DR091250 RTAL1_20_G12.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_20_G12_A029 3', mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 413 cgtcgaagagctccaatggca 433
>gb|DR681936.1|DR681936 EST1072011 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA394 3' end, mRNA sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 216 cgtcgaagagctccaatggca 196
>gb|DR684165.1|DR684165 EST1074242 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP60 3' end, mRNA sequence
Length = 839
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 185 cgtcgaagagctccaatggca 165
>gb|DR692332.1|DR692332 EST1082420 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADK94 3' end, mRNA sequence
Length = 795
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 248 cgtcgaagagctccaatggca 228
>gb|DT631738.1|DT631738 EST1146669 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFC12 3' end, mRNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 193 cgtcgaagagctccaatggca 173
>gb|DT637209.1|DT637209 EST1152140 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH092 3' end, mRNA sequence
Length = 717
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 245 cgtcgaagagctccaatggca 265
|||||||||||||||||||||
Sbjct: 256 cgtcgaagagctccaatggca 236
>gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_E04_A029 5', mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.11
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 17 tctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgt 68
||||||| ||||||||||| |||| || |||| ||| ||||||||| ||||
Sbjct: 534 tctgtagccatgctggaataaagggcactagtaagccagctcactacaatgt 483
>gb|DR069603.1|DR069603 RTDK1_8_F06.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_8_F06_A029 3', mRNA sequence
Length = 801
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 297 tgtgaaggagaaggtgaaaagggtgatg 324
|||||||||||||| | |||||||||||
Sbjct: 426 tgtgaaggagaaggcggaaagggtgatg 453
>gb|DR069679.1|DR069679 RTDK1_8_F06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_8_F06_A029 5', mRNA sequence
Length = 834
Score = 40.1 bits (20), Expect = 0.11
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 297 tgtgaaggagaaggtgaaaagggtgatg 324
|||||||||||||| | |||||||||||
Sbjct: 586 tgtgaaggagaaggcggaaagggtgatg 613
>gb|DR093250.1|DR093250 STRR1_7_C02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_C02_A033 3', mRNA sequence
Length = 864
Score = 38.2 bits (19), Expect = 0.42
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 294 tgctgtgaaggagaaggtg 312
|||||||||||||||||||
Sbjct: 711 tgctgtgaaggagaaggtg 693
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,994
Number of Sequences: 355925
Number of extensions: 62994
Number of successful extensions: 18664
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18639
Number of HSP's gapped (non-prelim): 25
length of query: 635
length of database: 217,277,237
effective HSP length: 19
effective length of query: 616
effective length of database: 210,514,662
effective search space: 129677031792
effective search space used: 129677031792
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)