BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF220997.1|BF220997 NXCI_153_F06_F NXCI (Nsf Xylem Compr... 76 4e-012
gb|CF475384.1|CF475384 RTWW2_13_E10.g1_A021 Well-watered lo... 76 4e-012
gb|DR054303.1|DR054303 RTCA1_16_B11.g1_A029 Roots minus cal... 76 4e-012
gb|DR684271.1|DR684271 EST1074348 Normalized pine embryo li... 76 4e-012
gb|DR687852.1|DR687852 EST1077935 Normalized pine embryo li... 76 4e-012
gb|DR692052.1|DR692052 EST1082139 Normalized pine embryo li... 76 4e-012
gb|DT637416.1|DT637416 EST1152347 Normalized pine embryo li... 76 4e-012
gb|BQ696246.1|BQ696246 NXPV_037_A11_F NXPV (Nsf Xylem Plani... 60 2e-007
gb|BQ697281.1|BQ697281 NXPV_055_C04_F NXPV (Nsf Xylem Plani... 60 2e-007
gb|BQ697862.1|BQ697862 NXPV_061_G08_F NXPV (Nsf Xylem Plani... 60 2e-007
gb|DR054232.1|DR054232 RTCA1_16_B11.b1_A029 Roots minus cal... 60 2e-007
gb|AW290609.1|AW290609 NXNV044A09F Nsf Xylem Normal wood Ve... 58 9e-007
gb|BF777950.1|BF777950 NXSI_079_C02_F NXSI (Nsf Xylem Side ... 58 9e-007
gb|CD027268.1|CD027268 NXNV044A09 Nsf Xylem Normal wood Ver... 58 9e-007
gb|BX253975.1|BX253975 BX253975 Pinus pinaster differenciat... 54 1e-005
gb|DR011057.1|DR011057 HEAT1_3_C08.b1_A029 Root at 37 C for... 46 0.003
gb|DR011118.1|DR011118 HEAT1_3_C08.g1_A029 Root at 37 C for... 46 0.003
gb|DR095417.1|DR095417 STRR1_20_H04.g1_A033 Stem Response R... 46 0.003
gb|BQ701526.1|BQ701526 NXSI_065_F04_F NXSI (Nsf Xylem Side ... 44 0.013
gb|DR055172.1|DR055172 RTCA1_22_B04.b1_A029 Roots minus cal... 44 0.013
>gb|BF220997.1|BF220997 NXCI_153_F06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_153_F06 5' similar to Arabidopsis
thaliana sequence At5g08080 syntaxin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 425
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 237 atgaaagcaattaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 294
>gb|CF475384.1|CF475384 RTWW2_13_E10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_E10_A021 5', mRNA sequence
Length = 703
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 357 atgaaagcaattaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 414
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattc 666
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||
Sbjct: 648 gatgaagagacaattgatcgcttgatagagaccggggatagtgagcagatattc 701
>gb|DR054303.1|DR054303 RTCA1_16_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_B11_A029 5', mRNA sequence
Length = 560
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 469 atgaaagcaattaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 526
>gb|DR684271.1|DR684271 EST1074348 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAQ79 3' end, mRNA sequence
Length = 731
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 456 atgaaagcaattaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 513
>gb|DR687852.1|DR687852 EST1077935 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX34 3' end, mRNA sequence
Length = 837
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 243 atgaaagcaattaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 300
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattc 666
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||
Sbjct: 534 gatgaagagacaattgatcgcttgatagagaccggggatagtgagcagatattc 587
>gb|DR692052.1|DR692052 EST1082139 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH41 3' end, mRNA sequence
Length = 642
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 279 atgaaagcaattaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 336
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccgg 647
|||||||||||||||||| |||||||||||||||
Sbjct: 570 gatgaagagacaattgatcgcttgatagagaccgg 604
>gb|DT637416.1|DT637416 EST1152347 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH337 3' end, mRNA sequence
Length = 901
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 287 atgaaagcaattaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 344
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattc 666
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||
Sbjct: 578 gatgaagagacaattgatcgcttgatagagaccggggatagtgagcagatattc 631
>gb|BQ696246.1|BQ696246 NXPV_037_A11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_A11 5' similar to Arabidopsis
thaliana sequence At5g08080 syntaxin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 345
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattc 666
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||
Sbjct: 66 gatgaagagacaattgatcgcttgatagagaccggggatagtgagcagatattc 119
>gb|BQ697281.1|BQ697281 NXPV_055_C04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_055_C04 5' similar to Arabidopsis
thaliana sequence At3g03800 s-syntaxin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 345
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattc 666
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||
Sbjct: 66 gatgaagagacaattgatcgcttgatagagaccggggatagtgagcagatattc 119
>gb|BQ697862.1|BQ697862 NXPV_061_G08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_061_G08 5' similar to Arabidopsis
thaliana sequence At5g08080 syntaxin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 511
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattc 666
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||
Sbjct: 66 gatgaagagacaattgatcgcttgatagagaccggggatagtgagcagatattc 119
Score = 44.1 bits (22), Expect = 0.013
Identities = 82/102 (80%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
||||||||||||||||| || || || | |||| |||||||| || |||| |||||
Sbjct: 177 caggagcgacatgatgccgtcagagacattgagaaaaagcttcttgatctgcagcagatt 236
Query: 784 ttcatggacatggcagttcttgttgaggcgcaaggagacatg 825
||| |||| ||||| || || |||||| | ||||||||||||
Sbjct: 237 ttcttggatatggctgtgctggttgagtcacaaggagacatg 278
>gb|DR054232.1|DR054232 RTCA1_16_B11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_16_B11_A029 3', mRNA sequence
Length = 805
Score = 60.0 bits (30), Expect = 2e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccggaaaaagtgagcaaatattc 666
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||
Sbjct: 72 gatgaagagacaattgatcgcttgatagagaccggggatagtgagcagatattc 125
Score = 44.1 bits (22), Expect = 0.013
Identities = 82/102 (80%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
||||||||||||||||| || || || | |||| |||||||| || |||| |||||
Sbjct: 183 caggagcgacatgatgccgtcagagacattgagaaaaagcttcttgatctgcagcagatt 242
Query: 784 ttcatggacatggcagttcttgttgaggcgcaaggagacatg 825
||| |||| ||||| || || |||||| | ||||||||||||
Sbjct: 243 ttcttggatatggctgtgctggttgagtcacaaggagacatg 284
>gb|AW290609.1|AW290609 NXNV044A09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044A09 5', mRNA sequence
Length = 379
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||| ||||| ||||| |||||||||||| | |||||||||| ||||| ||||
Sbjct: 314 atgaaagcnattaaacagcgcatggagaaagatgtgnatgaagtgggaaaaatngctc 371
>gb|BF777950.1|BF777950 NXSI_079_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_079_C02 5' similar to Arabidopsis thaliana
sequence At3g03800 s-syntaxin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 277
Score = 58.0 bits (29), Expect = 9e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 331 attaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
||||| ||||| |||||||||||| | ||||||||||| ||||||||||
Sbjct: 1 attaaacagcgcatggagaaagatgtggatgaagtgggaaaaattgctc 49
>gb|CD027268.1|CD027268 NXNV044A09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044A09 5' similar to Arabidopsis thaliana sequence
At3g03800 s-syntaxin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggggaaaattgctc 379
|||||||| ||||| ||||| |||||||||||| | |||||||||| ||||| ||||
Sbjct: 314 atgaaagcnattaaacagcgcatggagaaagatgtgnatgaagtgggaaaaatngctc 371
>gb|BX253975.1|BX253975 BX253975 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP091F01, mRNA sequence
Length = 522
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 613 gatgaagagacaattgatgacttgatagagaccgg 647
|||||||||||||||||| |||||||||||||||
Sbjct: 35 gatgaagagacaattgatcgcttgatagagaccgg 69
Score = 44.1 bits (22), Expect = 0.013
Identities = 82/102 (80%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
||||||||||||||||| || || || | |||| |||||||| || |||| |||||
Sbjct: 146 caggagcgacatgatgcagtcagagacattgagaaaaagcttcttgatctgcatcagatt 205
Query: 784 ttcatggacatggcagttcttgttgaggcgcaaggagacatg 825
||| |||| ||||| || || |||||| | ||||||||||||
Sbjct: 206 ttcttggatatggctgtgctggttgagtcacaaggagacatg 247
>gb|DR011057.1|DR011057 HEAT1_3_C08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_C08_A029 3', mRNA sequence
Length = 712
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 717 tgaaatacaggagcgacatgatgctgt 743
||||||||||||||| |||||||||||
Sbjct: 335 tgaaatacaggagcggcatgatgctgt 309
>gb|DR011118.1|DR011118 HEAT1_3_C08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_C08_A029 5', mRNA sequence
Length = 792
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 717 tgaaatacaggagcgacatgatgctgt 743
||||||||||||||| |||||||||||
Sbjct: 485 tgaaatacaggagcggcatgatgctgt 459
>gb|DR095417.1|DR095417 STRR1_20_H04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_H04_A033 5', mRNA sequence
Length = 808
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 717 tgaaatacaggagcgacatgatgctgt 743
||||||||||||||| |||||||||||
Sbjct: 499 tgaaatacaggagcggcatgatgctgt 473
>gb|BQ701526.1|BQ701526 NXSI_065_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_065_F04 5' similar to Arabidopsis thaliana
sequence At1g61290 similar to syntaxin-related protein
knolle see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 380
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 717 tgaaatacaggagcgacatgatgctg 742
||||||||||||||| ||||||||||
Sbjct: 207 tgaaatacaggagcggcatgatgctg 232
>gb|DR055172.1|DR055172 RTCA1_22_B04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_22_B04_A029 3', mRNA sequence
Length = 761
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 717 tgaaatacaggagcgacatgatgctg 742
||||||||||||||| ||||||||||
Sbjct: 12 tgaaatacaggagcggcatgatgctg 37
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,957
Number of Sequences: 355925
Number of extensions: 146957
Number of successful extensions: 39681
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39617
Number of HSP's gapped (non-prelim): 60
length of query: 1189
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1170
effective length of database: 210,514,662
effective search space: 246302154540
effective search space used: 246302154540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)