BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2969966.2.1
         (1029 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF518211.1|BF518211  NXSI_036_D07_F NXSI (Nsf Xylem Side ...   103   1e-020
gb|DN612931.1|DN612931  EST965981 Subtracted pine embryo lib...    42   0.044
gb|DR054271.1|DR054271  RTCA1_16_G04.b1_A029 Roots minus cal...    42   0.044
gb|DT628876.1|DT628876  EST1155446 Subtracted pine embryo li...    42   0.044
gb|DR111295.1|DR111295  RTS1_16_E08.g1_A029 Roots minus sulf...    40   0.18 

>gb|BF518211.1|BF518211 NXSI_036_D07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_036_D07 5' similar to Arabidopsis thaliana
           sequence At1g30330 putative protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 323

 Score =  103 bits (52), Expect = 1e-020
 Identities = 124/148 (83%)
 Strand = Plus / Plus

                                                                       
Query: 130 ggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcc 189
           |||||||| |||| |||||||| |  || || |||||||| |||||||| || || ||||
Sbjct: 44  ggccacaggctgtaatgccctcattggtactctcgagtgatagcatgcatatagggctcc 103

                                                                       
Query: 190 ttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatccta 249
           |||| || || |||||||||||||| ||||| || || || || |||||||||||||| |
Sbjct: 104 ttgctgcggctgctcatgctgctgctacaaatagtcgatttactattttctataatccaa 163

                                       
Query: 250 gggcaagtccaacagaatttgttatacc 277
           ||||||||||| | |||||||| |||||
Sbjct: 164 gggcaagtccatctgaatttgtcatacc 191



>gb|DN612931.1|DN612931 EST965981 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
           clone PSABL95, mRNA sequence
          Length = 596

 Score = 42.1 bits (21), Expect = 0.044
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 20  cactggctggagtgtgtttgtcagtgctaagagacttgttgctggagat 68
           ||||||||||||||| ||||| ||  |||| |||||||| || ||||||
Sbjct: 429 cactggctggagtgtctttgttagctctaaaagacttgtggcaggagat 381



>gb|DR054271.1|DR054271 RTCA1_16_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
          RTCA1_16_G04_A029 3', mRNA sequence
          Length = 631

 Score = 42.1 bits (21), Expect = 0.044
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                           
Query: 20 cactggctggagtgtgtttgtcagtgctaagagacttgttgctggagat 68
          ||||||||||||||| ||||| ||  |||| |||||||| || ||||||
Sbjct: 22 cactggctggagtgtctttgttagctctaaaagacttgtggcaggagat 70



>gb|DT628876.1|DT628876 EST1155446 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
           clone PIMD303 5' end, mRNA sequence
          Length = 596

 Score = 42.1 bits (21), Expect = 0.044
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 20  cactggctggagtgtgtttgtcagtgctaagagacttgttgctggagat 68
           ||||||||||||||| ||||| ||  |||| |||||||| || ||||||
Sbjct: 168 cactggctggagtgtctttgttagctctaaaagacttgtggcaggagat 216



>gb|DR111295.1|DR111295 RTS1_16_E08.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
           RTS1_16_E08_A029 5', mRNA sequence
          Length = 627

 Score = 40.1 bits (20), Expect = 0.18
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 877 agcaagcgagccaacagcag 896
           ||||||||||||||||||||
Sbjct: 202 agcaagcgagccaacagcag 221



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,734
Number of Sequences: 355925
Number of extensions: 148734
Number of successful extensions: 43596
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43591
Number of HSP's gapped (non-prelim): 5
length of query: 1029
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1010
effective length of database: 210,514,662
effective search space: 212619808620
effective search space used: 212619808620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)