BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF399989.1|CF399989 RTWW1_2_C12.g1_A015 Well-watered lob... 60 6e-007
gb|CO173085.1|CO173085 NDL1_33_H09.g1_A029 Needles control ... 60 6e-007
gb|DR081108.1|DR081108 RTFEPL1_27_A10.g1_A029 Roots plus ad... 60 6e-007
dbj|BD266974.1| Compositions isolated from plant cells and ... 60 6e-007
gb|CO198621.1|CO198621 GEO1_15_E06.b1_A029 Root gravitropis... 52 2e-004
gb|DR052754.1|DR052754 RTCA1_6_E01.g1_A029 Roots minus calc... 46 0.009
gb|DN446465.1|DN446465 EST942264 Sequencing ESTs from loblo... 44 0.037
gb|DR010960.1|DR010960 HEAT1_2_A04.g1_A029 Root at 37 C for... 44 0.037
>gb|CF399989.1|CF399989 RTWW1_2_C12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_C12_A015 5', mRNA sequence
Length = 754
Score = 60.0 bits (30), Expect = 6e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcat 631
|||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 390 tcaaacccatccatttctggcatctgcacatccatgaaacatgcat 345
Score = 44.1 bits (22), Expect = 0.037
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 689 taacattagcaccatatttcttgagtgcagccgcagcaactc 730
|||||||||||||||| ||||| |||||| | ||||| ||||
Sbjct: 287 taacattagcaccatacttcttcagtgcaccagcagcgactc 246
>gb|CO173085.1|CO173085 NDL1_33_H09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_33_H09_A029 5', mRNA sequence
Length = 771
Score = 60.0 bits (30), Expect = 6e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcat 631
|||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 664 tcaaacccatccatttctggcatctgcacatccatgaaacatgcat 619
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 689 taacattagcaccatatttcttgagtgca 717
|||||||||||||||| ||||| ||||||
Sbjct: 561 taacattagcaccatacttcttcagtgca 533
>gb|DR081108.1|DR081108 RTFEPL1_27_A10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_27_A10_A029 5', mRNA sequence
Length = 747
Score = 60.0 bits (30), Expect = 6e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcat 631
|||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 557 tcaaacccatccatttctggcatctgcacatccatgaaacatgcat 512
Score = 44.1 bits (22), Expect = 0.037
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 689 taacattagcaccatatttcttgagtgcagccgcagcaactc 730
|||||||||||||||| ||||| |||||| | ||||| ||||
Sbjct: 454 taacattagcaccatacttcttcagtgcaccagcagcgactc 413
>dbj|BD266974.1| Compositions isolated from plant cells and utilization of the same
in modifying plant cell signal transduction
Length = 1489
Score = 60.0 bits (30), Expect = 6e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 586 tcaaacccgtccatctctggcatctgaacatccataaaacatgcat 631
|||||||| ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 978 tcaaacccatccatttctggcatctgcacatccatgaaacatgcat 933
Score = 44.1 bits (22), Expect = 0.037
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 689 taacattagcaccatatttcttgagtgcagccgcagcaactc 730
|||||||||||||||| ||||| |||||| | ||||| ||||
Sbjct: 875 taacattagcaccatacttcttcagtgcaccagcagcgactc 834
>gb|CO198621.1|CO198621 GEO1_15_E06.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_15_E06_A029 3', mRNA sequence
Length = 724
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 583 gcctcaaacccgtccatctctggcatctgaacatccataaaacatgcatc 632
||||||||||| ||||| |||||||| || |||||||| || ||||||||
Sbjct: 654 gcctcaaacccatccatttctggcatttgtacatccatgaagcatgcatc 703
Score = 46.1 bits (23), Expect = 0.009
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 448 gttgcctggataacatcggctgtcattgcca 478
||||||||||||||||| || ||||||||||
Sbjct: 516 gttgcctggataacatcagcagtcattgcca 546
>gb|DR052754.1|DR052754 RTCA1_6_E01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_E01_A029 5', mRNA sequence
Length = 836
Score = 46.1 bits (23), Expect = 0.009
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 448 gttgcctggataacatcggctgtcattgcca 478
||||||||||||||||| || ||||||||||
Sbjct: 130 gttgcctggataacatcagcagtcattgcca 100
>gb|DN446465.1|DN446465 EST942264 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIBI07 5' end, mRNA sequence
Length = 547
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3285 ctcctcctcctctttctcttcc 3306
||||||||||||||||||||||
Sbjct: 171 ctcctcctcctctttctcttcc 150
>gb|DR010960.1|DR010960 HEAT1_2_A04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_A04_A029 5', mRNA sequence
Length = 633
Score = 44.1 bits (22), Expect = 0.037
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 47 ctcctcctcctcttcctcttcctcct 22
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 396,404
Number of Sequences: 355925
Number of extensions: 396404
Number of successful extensions: 112146
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112115
Number of HSP's gapped (non-prelim): 31
length of query: 3330
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3310
effective length of database: 210,158,737
effective search space: 695625419470
effective search space used: 695625419470
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)