BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX712484.1|CX712484 RTPQ1_2_G01.g2_A032 Roots treated wi... 50 2e-004
gb|AW011230.1|AW011230 ST18C07 Pine TriplEx shoot tip libra... 42 0.045
gb|AW064721.1|AW064721 ST35A02 Pine TriplEx shoot tip libra... 42 0.045
gb|AW290426.1|AW290426 NXNV020E04F Nsf Xylem Normal wood Ve... 42 0.045
gb|BX252707.1|BX252707 BX252707 Pinus pinaster differenciat... 42 0.045
gb|BX253213.1|BX253213 BX253213 Pinus pinaster differenciat... 42 0.045
gb|BX253625.1|BX253625 BX253625 Pinus pinaster differenciat... 42 0.045
gb|BE187297.1|BE187297 NXNV_162_B12_F Nsf Xylem Normal wood... 42 0.045
gb|BG318905.1|BG318905 NXPV_021_C11_F NXPV (Nsf Xylem Plani... 42 0.045
gb|BQ699182.1|BQ699182 NXRV120_E07_F NXRV (Nsf Xylem Root w... 42 0.045
gb|CD027086.1|CD027086 NXNV020E04 Nsf Xylem Normal wood Ver... 42 0.045
gb|CF475707.1|CF475707 RTWW2_11_G10.g1_A021 Well-watered lo... 42 0.045
gb|CF672548.1|CF672548 RTCNT1_64_H05.b1_A029 Root control P... 42 0.045
gb|CF672623.1|CF672623 RTCNT1_64_H05.g1_A029 Root control P... 42 0.045
gb|CO160128.1|CO160128 FLD1_19_A03.b1_A029 Root flooded Pin... 42 0.045
gb|CO160201.1|CO160201 FLD1_19_A03.g1_A029 Root flooded Pin... 42 0.045
gb|CO199374.1|CO199374 GEO1_20_F02.g1_A029 Root gravitropis... 42 0.045
gb|CO367704.1|CO367704 RTK1_36_B04.b1_A029 Roots minus pota... 42 0.045
gb|CV035712.1|CV035712 RTNACL1_42_A06.b1_A029 Roots plus ad... 42 0.045
gb|CV035788.1|CV035788 RTNACL1_42_A06.g1_A029 Roots plus ad... 42 0.045
gb|DN609369.1|DN609369 EST962419 Subtracted pine embryo lib... 42 0.045
gb|DR012508.1|DR012508 HEAT1_13_G02.b1_A029 Root at 37 C fo... 42 0.045
gb|DR012588.1|DR012588 HEAT1_13_G02.g1_A029 Root at 37 C fo... 42 0.045
gb|DR014618.1|DR014618 HEAT1_50_C10.g1_A029 Root at 37 C fo... 42 0.045
gb|DR014767.1|DR014767 HEAT1_51_B06.g1_A029 Root at 37 C fo... 42 0.045
gb|DR017755.1|DR017755 STRS1_18_G04.b1_A034 Shoot tip pitch... 42 0.045
gb|DR017840.1|DR017840 STRS1_18_G04.g1_A034 Shoot tip pitch... 42 0.045
gb|DR055871.1|DR055871 RTCA1_26_B02.g1_A029 Roots minus cal... 42 0.045
gb|DR058638.1|DR058638 RTNIT1_13_B05.b1_A029 Roots minus ni... 42 0.045
gb|DR058721.1|DR058721 RTNIT1_13_B05.g1_A029 Roots minus ni... 42 0.045
gb|DR089709.1|DR089709 RTAL1_10_G10.b1_A029 Roots plus adde... 42 0.045
gb|DR089794.1|DR089794 RTAL1_10_G10.g1_A029 Roots plus adde... 42 0.045
gb|DR091888.1|DR091888 RTAL1_24_D06.g1_A029 Roots plus adde... 42 0.045
gb|DR385882.1|DR385882 RTHG1_11_A07.g1_A029 Roots plus adde... 42 0.045
gb|DR682838.1|DR682838 EST1072913 Normalized pine embryo li... 42 0.045
gb|DR682839.1|DR682839 EST1072914 Normalized pine embryo li... 42 0.045
gb|DR683008.1|DR683008 EST1073083 Normalized pine embryo li... 42 0.045
gb|DR683009.1|DR683009 EST1073084 Normalized pine embryo li... 42 0.045
gb|DR688845.1|DR688845 EST1078931 Normalized pine embryo li... 42 0.045
gb|DR694166.1|DR694166 EST1084256 Normalized pine embryo li... 42 0.045
gb|DR744595.1|DR744595 RTCU1_23_C03.g1_A029 Roots plus adde... 42 0.045
gb|DT627731.1|DT627731 EST1156480 Subtracted pine embryo li... 42 0.045
gb|DT631560.1|DT631560 EST1146491 Normalized pine embryo li... 42 0.045
>gb|CX712484.1|CX712484 RTPQ1_2_G01.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_G01_A032 5', mRNA sequence
Length = 903
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggtgttgtactcatt 267
||||| || |||||||| |||||||||||| ||||||||||
Sbjct: 771 gatgaccaacagtggcttacttactgggtgctgtactcatt 731
>gb|AW011230.1|AW011230 ST18C07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18C07, mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 331 gatgatcagcagtggctgacgtactgggt 359
>gb|AW064721.1|AW064721 ST35A02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST35A02, mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 369 gatgatcagcagtggctgacgtactgggt 397
>gb|AW290426.1|AW290426 NXNV020E04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV020E04 5', mRNA sequence
Length = 325
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 265 gatgatcagcagtggctgacgtactgggt 293
>gb|BX252707.1|BX252707 BX252707 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069D07 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 14 gatgatcagcagtggctgacgtactgggt 42
>gb|BX253213.1|BX253213 BX253213 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079H01 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 501
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 180 gatgatcagcagtggctgacgtactgggt 208
>gb|BX253625.1|BX253625 BX253625 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP086B03 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 374 gatgatcagcagtggctgacgtactgggt 402
>gb|BE187297.1|BE187297 NXNV_162_B12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_B12 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 144 gatgatcagcagtggctgacgtactgggt 172
>gb|BG318905.1|BG318905 NXPV_021_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_021_C11 5' similar to Arabidopsis
thaliana sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 503
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 357 gatgatcagcagtggctgacgtactgggt 385
>gb|BQ699182.1|BQ699182 NXRV120_E07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV120_E07 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 199 gatgatcagcagtggctgacgtactgggt 227
>gb|CD027086.1|CD027086 NXNV020E04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV020E04 5' similar to Arabidopsis thaliana sequence
At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 325
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 265 gatgatcagcagtggctgacgtactgggt 293
>gb|CF475707.1|CF475707 RTWW2_11_G10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_G10_A021 5', mRNA sequence
Length = 731
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 699 gatgatcagcagtggctgacgtactgggt 671
>gb|CF672548.1|CF672548 RTCNT1_64_H05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_H05_A029 3', mRNA sequence
Length = 765
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 85 gatgatcagcagtggctgacgtactgggt 113
>gb|CF672623.1|CF672623 RTCNT1_64_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_H05_A029 5', mRNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 237 gatgatcagcagtggctgacgtactgggt 265
>gb|CO160128.1|CO160128 FLD1_19_A03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A03_A029 3', mRNA sequence
Length = 759
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 106 gatgatcagcagtggctgacgtactgggt 134
>gb|CO160201.1|CO160201 FLD1_19_A03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A03_A029 5', mRNA sequence
Length = 750
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 236 gatgatcagcagtggctgacgtactgggt 264
>gb|CO199374.1|CO199374 GEO1_20_F02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_20_F02_A029 5', mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 632 gatgatcagcagtggctgacgtactgggt 604
>gb|CO367704.1|CO367704 RTK1_36_B04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_B04_A029 3', mRNA sequence
Length = 837
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 290 gatgatcagcagtggctgacgtactgggt 262
>gb|CV035712.1|CV035712 RTNACL1_42_A06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_42_A06_A029 3', mRNA sequence
Length = 822
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 346 gatgatcagcagtggctgacgtactgggt 318
>gb|CV035788.1|CV035788 RTNACL1_42_A06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_42_A06_A029 5', mRNA sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 585 gatgatcagcagtggctgacgtactgggt 557
>gb|DN609369.1|DN609369 EST962419 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAC05, mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 390 gatgatcagcagtggctgacgtactgggt 418
>gb|DR012508.1|DR012508 HEAT1_13_G02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_G02_A029 3', mRNA sequence
Length = 826
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 177 gatgatcagcagtggctgacgtactgggt 205
>gb|DR012588.1|DR012588 HEAT1_13_G02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_G02_A029 5', mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 627 gatgatcagcagtggctgacgtactgggt 655
>gb|DR014618.1|DR014618 HEAT1_50_C10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_C10_A029 5', mRNA sequence
Length = 778
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 93 gatgatcagcagtggctgacgtactgggt 121
>gb|DR014767.1|DR014767 HEAT1_51_B06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B06_A029 5', mRNA sequence
Length = 870
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 324 gatgatcagcagtggctgacgtactgggt 352
>gb|DR017755.1|DR017755 STRS1_18_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_G04_A034 3', mRNA sequence
Length = 846
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 215 gatgatcagcagtggctgacgtactgggt 243
>gb|DR017840.1|DR017840 STRS1_18_G04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_G04_A034 5', mRNA sequence
Length = 718
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 341 gatgatcagcagtggctgacgtactgggt 369
>gb|DR055871.1|DR055871 RTCA1_26_B02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_B02_A029 5', mRNA sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 187 gatgatcagcagtggctgacgtactgggt 215
>gb|DR058638.1|DR058638 RTNIT1_13_B05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_B05_A029 3', mRNA sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 28 gatgatcagcagtggctgacgtactgggt 56
>gb|DR058721.1|DR058721 RTNIT1_13_B05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_B05_A029 5', mRNA sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 372 gatgatcagcagtggctgacgtactgggt 400
>gb|DR089709.1|DR089709 RTAL1_10_G10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_G10_A029 3', mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 62 gatgatcagcagtggctgacgtactgggt 90
>gb|DR089794.1|DR089794 RTAL1_10_G10.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_G10_A029 5', mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 220 gatgatcagcagtggctgacgtactgggt 248
>gb|DR091888.1|DR091888 RTAL1_24_D06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_D06_A029 5', mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 286 gatgatcagcagtggctgacgtactgggt 314
>gb|DR385882.1|DR385882 RTHG1_11_A07.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_A07_A029 5', mRNA sequence
Length = 825
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 291 gatgatcagcagtggctgacgtactgggt 319
>gb|DR682838.1|DR682838 EST1072913 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAC56, mRNA sequence
Length = 895
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 667 gatgatcagcagtggctgacgtactgggt 639
>gb|DR682839.1|DR682839 EST1072914 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAC56 3' end, mRNA sequence
Length = 803
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 692 gatgatcagcagtggctgacgtactgggt 720
>gb|DR683008.1|DR683008 EST1073083 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD72, mRNA sequence
Length = 831
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 635 gatgatcagcagtggctgacgtactgggt 607
>gb|DR683009.1|DR683009 EST1073084 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD72 3' end, mRNA sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 436 gatgatcagcagtggctgacgtactgggt 464
>gb|DR688845.1|DR688845 EST1078931 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACB29 3' end, mRNA sequence
Length = 846
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 384 gatgatcagcagtggctgacgtactgggt 412
>gb|DR694166.1|DR694166 EST1084256 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE887 3' end, mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 233 gatgatcagcagtggctgacgtactgggt 261
>gb|DR744595.1|DR744595 RTCU1_23_C03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_23_C03_A029 5', mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 562 gatgatcagcagtggctgacgtactgggt 534
>gb|DT627731.1|DT627731 EST1156480 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCQ04 5' end, mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 249 gatgatcagcagtggctgacgtactgggt 221
>gb|DT631560.1|DT631560 EST1146491 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA13 3' end, mRNA sequence
Length = 800
Score = 42.1 bits (21), Expect = 0.045
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 227 gatgatcagcagtggctcacttactgggt 255
||||||||||||||||| || ||||||||
Sbjct: 436 gatgatcagcagtggctgacgtactgggt 464
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,811
Number of Sequences: 355925
Number of extensions: 122811
Number of successful extensions: 38719
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38636
Number of HSP's gapped (non-prelim): 83
length of query: 1044
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1025
effective length of database: 210,514,662
effective search space: 215777528550
effective search space used: 215777528550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)