BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950080.2.1
(687 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL750942.1|AL750942 AL750942 RS Pinus pinaster cDNA clon... 40 0.12
gb|BX681342.1|BX681342 BX681342 RS Pinus pinaster cDNA clon... 40 0.12
gb|CR394284.1|CR394284 CR394284 RN Pinus pinaster cDNA clon... 40 0.12
gb|CR394478.1|CR394478 CR394478 RN Pinus pinaster cDNA clon... 40 0.12
gb|CF477053.1|CF477053 RTWW3_5_G01.g1_A022 Well-watered lob... 38 0.46
gb|CO165824.1|CO165824 FLD1_57_G09.b1_A029 Root flooded Pin... 38 0.46
gb|DR052039.1|DR052039 RTCA1_2_B11.b1_A029 Roots minus calc... 38 0.46
gb|DR052048.1|DR052048 RTCA1_2_C11.b1_A029 Roots minus calc... 38 0.46
gb|DR052117.1|DR052117 RTCA1_2_B11.g1_A029 Roots minus calc... 38 0.46
gb|DR052128.1|DR052128 RTCA1_2_C11.g1_A029 Roots minus calc... 38 0.46
>gb|AL750942.1|AL750942 AL750942 RS Pinus pinaster cDNA clone RS02C03 similar to
LEUCOANTHOCYANIDIN DIOXYGENASE, mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 371 ggttccaagctcgccaacaa 390
||||||||||||||||||||
Sbjct: 219 ggttccaagctcgccaacaa 238
>gb|BX681342.1|BX681342 BX681342 RS Pinus pinaster cDNA clone RS57D02_1, mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 371 ggttccaagctcgccaacaa 390
||||||||||||||||||||
Sbjct: 474 ggttccaagctcgccaacaa 493
>gb|CR394284.1|CR394284 CR394284 RN Pinus pinaster cDNA clone RN76C01, mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 371 ggttccaagctcgccaacaa 390
||||||||||||||||||||
Sbjct: 192 ggttccaagctcgccaacaa 211
>gb|CR394478.1|CR394478 CR394478 RN Pinus pinaster cDNA clone RN79H05, mRNA sequence
Length = 502
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 371 ggttccaagctcgccaacaa 390
||||||||||||||||||||
Sbjct: 453 ggttccaagctcgccaacaa 472
>gb|CF477053.1|CF477053 RTWW3_5_G01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_G01_A022 5', mRNA sequence
Length = 750
Score = 38.2 bits (19), Expect = 0.46
Identities = 82/103 (79%)
Strand = Plus / Plus
Query: 201 tcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactag 260
|||||||||||||||| || |||||||| | | ||||||| || ||||| | |||
Sbjct: 335 tcaacgaggacctggtaaatgatgagcttgaaggcgtgatggatgagggtggaaacatag 394
Query: 261 tagattaccacggatgtgatttctttccagaacgttggtttga 303
| |||||||| | || |||||||||||||| || ||||||||
Sbjct: 395 ttgattaccatagctgcgatttctttccagagcgatggtttga 437
>gb|CO165824.1|CO165824 FLD1_57_G09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_G09_A029 3', mRNA sequence
Length = 709
Score = 38.2 bits (19), Expect = 0.46
Identities = 82/103 (79%)
Strand = Plus / Minus
Query: 201 tcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactag 260
|||||||||||||||| || |||||||| | | ||||||| || ||||| | |||
Sbjct: 367 tcaacgaggacctggtaaatgatgagcttgaaggcgtgatggatgagggtggaaacatag 308
Query: 261 tagattaccacggatgtgatttctttccagaacgttggtttga 303
| |||||||| | || |||||||||||||| || ||||||||
Sbjct: 307 ttgattaccatagctgcgatttctttccagagcgatggtttga 265
>gb|DR052039.1|DR052039 RTCA1_2_B11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_B11_A029 3', mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.46
Identities = 82/103 (79%)
Strand = Plus / Plus
Query: 201 tcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactag 260
|||||||||||||||| || |||||||| | | ||||||| || ||||| | |||
Sbjct: 217 tcaacgaggacctggtaaatgatgagcttgaaggcgtgatggatgagggtggaaacatag 276
Query: 261 tagattaccacggatgtgatttctttccagaacgttggtttga 303
| |||||||| | || |||||||||||||| || ||||||||
Sbjct: 277 ttgattaccatagctgcgatttctttccagagcgatggtttga 319
>gb|DR052048.1|DR052048 RTCA1_2_C11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_C11_A029 3', mRNA sequence
Length = 812
Score = 38.2 bits (19), Expect = 0.46
Identities = 82/103 (79%)
Strand = Plus / Plus
Query: 201 tcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactag 260
|||||||||||||||| || |||||||| | | ||||||| || ||||| | |||
Sbjct: 205 tcaacgaggacctggtaaatgatgagcttgaaggcgtgatggatgagggtggaaacatag 264
Query: 261 tagattaccacggatgtgatttctttccagaacgttggtttga 303
| |||||||| | || |||||||||||||| || ||||||||
Sbjct: 265 ttgattaccatagctgcgatttctttccagagcgatggtttga 307
>gb|DR052117.1|DR052117 RTCA1_2_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_B11_A029 5', mRNA sequence
Length = 921
Score = 38.2 bits (19), Expect = 0.46
Identities = 82/103 (79%)
Strand = Plus / Plus
Query: 201 tcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactag 260
|||||||||||||||| || |||||||| | | ||||||| || ||||| | |||
Sbjct: 360 tcaacgaggacctggtaaatgatgagcttgaaggcgtgatggatgagggtggaaacatag 419
Query: 261 tagattaccacggatgtgatttctttccagaacgttggtttga 303
| |||||||| | || |||||||||||||| || ||||||||
Sbjct: 420 ttgattaccatagctgcgatttctttccagagcgatggtttga 462
>gb|DR052128.1|DR052128 RTCA1_2_C11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_C11_A029 5', mRNA sequence
Length = 903
Score = 38.2 bits (19), Expect = 0.46
Identities = 82/103 (79%)
Strand = Plus / Plus
Query: 201 tcaacgaggacctggtgtgcgacgagcttgaggacatgatggaagaaggtggtatactag 260
|||||||||||||||| || |||||||| | | ||||||| || ||||| | |||
Sbjct: 350 tcaacgaggacctggtaaatgatgagcttgaaggcgtgatggatgagggtggaaacatag 409
Query: 261 tagattaccacggatgtgatttctttccagaacgttggtttga 303
| |||||||| | || |||||||||||||| || ||||||||
Sbjct: 410 ttgattaccatagctgcgatttctttccagagcgatggtttga 452
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,326
Number of Sequences: 355925
Number of extensions: 68326
Number of successful extensions: 16181
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 16165
Number of HSP's gapped (non-prelim): 16
length of query: 687
length of database: 217,277,237
effective HSP length: 19
effective length of query: 668
effective length of database: 210,514,662
effective search space: 140623794216
effective search space used: 140623794216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)