BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX681680.1|BX681680 BX681680 RS Pinus pinaster cDNA clon... 84 8e-015
gb|AW011366.1|AW011366 ST19H10 Pine TriplEx shoot tip libra... 76 2e-012
gb|AW042959.1|AW042959 ST27E10 Pine TriplEx shoot tip libra... 76 2e-012
gb|DR099897.1|DR099897 STRR1_59_E05.g1_A033 Stem Response R... 76 2e-012
gb|AW064656.1|AW064656 ST34B04 Pine TriplEx shoot tip libra... 60 1e-007
gb|BG318067.1|BG318067 NXPV_010_B04_F NXPV (Nsf Xylem Plani... 60 1e-007
gb|BG318184.1|BG318184 NXPV_011_E02_F NXPV (Nsf Xylem Plani... 60 1e-007
gb|BI397846.1|BI397846 NXPV_108_D10_F NXPV (Nsf Xylem Plani... 60 1e-007
gb|BQ291482.1|BQ291482 NXRV059_F08_F NXRV (Nsf Xylem Root w... 60 1e-007
gb|BQ702181.1|BQ702181 NXSI_125_H02_F NXSI (Nsf Xylem Side ... 60 1e-007
gb|CD028483.1|CD028483 NXSI_119_E06_F NXSI (Nsf Xylem Side ... 60 1e-007
gb|CO367450.1|CO367450 RTK1_34_H04.b1_A029 Roots minus pota... 60 1e-007
gb|CO367532.1|CO367532 RTK1_34_H04.g1_A029 Roots minus pota... 60 1e-007
gb|CX649429.1|CX649429 COLD1_35_E12.b1_A029 Root cold Pinus... 60 1e-007
gb|CX649512.1|CX649512 COLD1_35_E12.g1_A029 Root cold Pinus... 60 1e-007
gb|DR050573.1|DR050573 RTBOR1_24_H06.b1_A029 Roots plus add... 60 1e-007
gb|DR050658.1|DR050658 RTBOR1_24_H06.g1_A029 Roots plus add... 60 1e-007
gb|DR089861.1|DR089861 RTAL1_11_F04.b1_A029 Roots plus adde... 60 1e-007
gb|DR092369.1|DR092369 STRR1_1_A09.b1_A033 Stem Response Re... 60 1e-007
gb|DR092449.1|DR092449 STRR1_1_A09.g1_A033 Stem Response Re... 60 1e-007
gb|DR111320.1|DR111320 RTS1_16_H04.g1_A029 Roots minus sulf... 60 1e-007
gb|DR117021.1|DR117021 RTMG1_4_F03.b1_A029 Roots minus magn... 60 1e-007
gb|DR120307.1|DR120307 RTMG1_28_G09.g2_A029 Roots minus mag... 60 1e-007
gb|DR385301.1|DR385301 RTHG1_7_G09.g1_A029 Roots plus added... 60 1e-007
gb|DR745683.1|DR745683 RTCU1_31_D06.g1_A029 Roots plus adde... 60 1e-007
gb|AW064560.1|AW064560 ST33A07 Pine TriplEx shoot tip libra... 58 5e-007
gb|BX677557.1|BX677557 BX677557 RN Pinus pinaster cDNA clon... 58 5e-007
gb|AW010680.1|AW010680 ST09H07 Pine TriplEx shoot tip libra... 56 2e-006
gb|AW042801.1|AW042801 ST25E10 Pine TriplEx shoot tip libra... 56 2e-006
gb|AW981873.1|AW981873 PC19F11 Pine TriplEx pollen cone lib... 56 2e-006
gb|BX249133.1|BX249133 BX249133 Pinus pinaster differenciat... 52 3e-005
gb|BX250252.1|BX250252 BX250252 Pinus pinaster differenciat... 52 3e-005
gb|BG039926.1|BG039926 NXSI_101_G08_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|BQ699586.1|BQ699586 NXRV124_C02_F NXRV (Nsf Xylem Root w... 52 3e-005
gb|BQ700423.1|BQ700423 NXRV105_E04_F NXRV (Nsf Xylem Root w... 52 3e-005
gb|CV032483.1|CV032483 RTNACL1_8_B03.g1_A029 Roots plus add... 52 3e-005
gb|CX651620.1|CX651620 COLD1_53_D10.g1_A029 Root cold Pinus... 52 3e-005
gb|DR011506.1|DR011506 HEAT1_6_D05.b1_A029 Root at 37 C for... 52 3e-005
gb|DR011586.1|DR011586 HEAT1_6_D05.g1_A029 Root at 37 C for... 52 3e-005
gb|DR098991.1|DR098991 STRR1_50_D02.b1_A033 Stem Response R... 52 3e-005
gb|DR109733.1|DR109733 RTS1_4_F11.b1_A029 Roots minus sulfu... 52 3e-005
gb|DR110590.1|DR110590 RTS1_11_F06.g1_A029 Roots minus sulf... 52 3e-005
gb|DR112758.1|DR112758 RTS1_30_H09.b1_A029 Roots minus sulf... 52 3e-005
gb|DR112824.1|DR112824 RTS1_30_H09.g1_A029 Roots minus sulf... 52 3e-005
gb|DR168541.1|DR168541 RTPHOS1_26_E04.b1_A029 Roots minus p... 52 3e-005
gb|DR168614.1|DR168614 RTPHOS1_26_E04.g1_A029 Roots minus p... 52 3e-005
gb|AW010040.1|AW010040 ST01G02 Pine TriplEx shoot tip libra... 48 5e-004
gb|BE656756.1|BE656756 NXCI_056_E06_F NXCI (Nsf Xylem Compr... 48 5e-004
gb|BG275492.1|BG275492 NXSI_139_E06_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|AW587726.1|AW587726 ST66A04 Pine TriplEx shoot tip libra... 44 0.007
gb|BQ702065.1|BQ702065 NXSI_124_A05_F NXSI (Nsf Xylem Side ... 44 0.007
gb|CD023288.1|CD023288 NXPV_108_C12_F NXPV (Nsf Xylem Plani... 44 0.007
gb|AW226132.1|AW226132 ST77F12 Pine TriplEx shoot tip libra... 38 0.44
>gb|BX681680.1|BX681680 BX681680 RS Pinus pinaster cDNA clone RS62H03, mRNA sequence
Length = 548
Score = 83.8 bits (42), Expect = 8e-015
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
|||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 274 tgcccctgctacaacaactggaagaccaagagaggaggccccaagtgccc 323
>gb|AW011366.1|AW011366 ST19H10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST19H10, mRNA sequence
Length = 396
Score = 75.8 bits (38), Expect = 2e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
|||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct: 178 tgcccctgttacaacaactggaagaccaagagaggaggccccaagtgccc 227
>gb|AW042959.1|AW042959 ST27E10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST27E10, mRNA sequence
Length = 513
Score = 75.8 bits (38), Expect = 2e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
|||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct: 376 tgcccctgttacaacaactggaagaccaagagaggaggccccaagtgccc 425
>gb|DR099897.1|DR099897 STRR1_59_E05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_59_E05_A033 5', mRNA sequence
Length = 430
Score = 75.8 bits (38), Expect = 2e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
|||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct: 215 tgcccctgttacaacaactggaagaccaagagaggaggccccaagtgccc 264
>gb|AW064656.1|AW064656 ST34B04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST34B04, mRNA sequence
Length = 508
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 353 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 402
>gb|BG318067.1|BG318067 NXPV_010_B04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_B04 5' similar to Arabidopsis
thaliana sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 62 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 111
>gb|BG318184.1|BG318184 NXPV_011_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_011_E02 5' similar to Arabidopsis
thaliana sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 514
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 62 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 111
>gb|BI397846.1|BI397846 NXPV_108_D10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_108_D10 5' similar to Arabidopsis
thaliana sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 24 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 73
>gb|BQ291482.1|BQ291482 NXRV059_F08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV059_F08 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 618
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 342 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 391
>gb|BQ702181.1|BQ702181 NXSI_125_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_125_H02 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 410
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 324 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 373
>gb|CD028483.1|CD028483 NXSI_119_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_119_E06 5' similar to Arabidopsis thaliana
sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 510
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 146 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 195
>gb|CO367450.1|CO367450 RTK1_34_H04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_H04_A029 3', mRNA sequence
Length = 712
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 344 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 295
>gb|CO367532.1|CO367532 RTK1_34_H04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_H04_A029 5', mRNA sequence
Length = 680
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 310 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 261
>gb|CX649429.1|CX649429 COLD1_35_E12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_E12_A029 3', mRNA sequence
Length = 733
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 294 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 343
>gb|CX649512.1|CX649512 COLD1_35_E12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_E12_A029 5', mRNA sequence
Length = 795
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 321 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 370
>gb|DR050573.1|DR050573 RTBOR1_24_H06.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_H06_A029 3', mRNA sequence
Length = 531
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 208 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 257
>gb|DR050658.1|DR050658 RTBOR1_24_H06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_H06_A029 5', mRNA sequence
Length = 664
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 320 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 369
>gb|DR089861.1|DR089861 RTAL1_11_F04.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_11_F04_A029 3', mRNA sequence
Length = 787
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 425 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 474
>gb|DR092369.1|DR092369 STRR1_1_A09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A09_A033 3', mRNA sequence
Length = 661
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 310 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 359
>gb|DR092449.1|DR092449 STRR1_1_A09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A09_A033 5', mRNA sequence
Length = 662
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 278 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 327
>gb|DR111320.1|DR111320 RTS1_16_H04.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_H04_A029 5', mRNA sequence
Length = 729
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 296 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 345
>gb|DR117021.1|DR117021 RTMG1_4_F03.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_F03_A029 3', mRNA sequence
Length = 715
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 263 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 312
>gb|DR120307.1|DR120307 RTMG1_28_G09.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_28_G09_A029 5', mRNA sequence
Length = 669
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 328 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 377
>gb|DR385301.1|DR385301 RTHG1_7_G09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_7_G09_A029 5', mRNA sequence
Length = 596
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 292 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 243
>gb|DR745683.1|DR745683 RTCU1_31_D06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_31_D06_A029 5', mRNA sequence
Length = 459
Score = 60.0 bits (30), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 336 tgcccttgctacaacaactggaagactcagcaaggaggccccaagtgccc 385
>gb|AW064560.1|AW064560 ST33A07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST33A07, mRNA sequence
Length = 584
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
|||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct: 368 tgcccctgttacaacaactggaagaccannagangaggccccaagtgccc 417
>gb|BX677557.1|BX677557 BX677557 RN Pinus pinaster cDNA clone RN41B08, mRNA sequence
Length = 460
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 479 ccctgctacaacaactggaagaccaagcggggaggccccaagtgcccct 527
||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 26 ccctgctacaacaactggaagactcagcaaggcggccccaagtgcccct 74
>gb|AW010680.1|AW010680 ST09H07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST09H07, mRNA sequence
Length = 650
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaa-gaccaagcggggaggccccaagtgccc 525
|||||||| |||||||||||| | ||||||| | |||||||||||||||||
Sbjct: 395 tgcccctgttacaacaactggnangaccaagagaggaggccccaagtgccc 445
>gb|AW042801.1|AW042801 ST25E10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST25E10, mRNA sequence
Length = 595
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccct 527
||||| |||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 361 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgcccct 412
>gb|AW981873.1|AW981873 PC19F11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC19F11, mRNA sequence
Length = 487
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccct 527
||||| |||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 254 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgcccct 305
>gb|BX249133.1|BX249133 BX249133 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020D05 similar to GIBBERELLIN REGULATED
PROTEIN, mRNA sequence
Length = 700
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 337 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgccc 386
>gb|BX250252.1|BX250252 BX250252 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034D01 similar to GIBBERELLIN REGULATED
PROTEIN, mRNA sequence
Length = 622
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 338 tgcccttgctacaacaactggaagactcagcaaggcggccccaagtgccc 387
>gb|BG039926.1|BG039926 NXSI_101_G08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_G08 5' similar to Arabidopsis thaliana
sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 104 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 153
>gb|BQ699586.1|BQ699586 NXRV124_C02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV124_C02 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 584
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 336 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 385
>gb|BQ700423.1|BQ700423 NXRV105_E04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_E04 5' similar to Arabidopsis thaliana
sequence At1g74670 GAST1-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 407
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 217 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 266
>gb|CV032483.1|CV032483 RTNACL1_8_B03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_8_B03_A029 5', mRNA sequence
Length = 704
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 433 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 384
>gb|CX651620.1|CX651620 COLD1_53_D10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_D10_A029 5', mRNA sequence
Length = 733
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 327 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 376
>gb|DR011506.1|DR011506 HEAT1_6_D05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_D05_A029 3', mRNA sequence
Length = 766
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 271 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 320
>gb|DR011586.1|DR011586 HEAT1_6_D05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_D05_A029 5', mRNA sequence
Length = 786
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 328 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 377
>gb|DR098991.1|DR098991 STRR1_50_D02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_50_D02_A033 3', mRNA sequence
Length = 460
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| ||||||||| |||||||
Sbjct: 184 tgcccttgctacaacaactggaagactcagcaaggaggcccctagtgccc 135
>gb|DR109733.1|DR109733 RTS1_4_F11.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_F11_A029 3', mRNA sequence
Length = 682
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 178 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 227
>gb|DR110590.1|DR110590 RTS1_11_F06.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_11_F06_A029 5', mRNA sequence
Length = 736
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 305 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 354
>gb|DR112758.1|DR112758 RTS1_30_H09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_30_H09_A029 3', mRNA sequence
Length = 668
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 196 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 245
>gb|DR112824.1|DR112824 RTS1_30_H09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_30_H09_A029 5', mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 327 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 376
>gb|DR168541.1|DR168541 RTPHOS1_26_E04.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_26_E04_A029 3', mRNA sequence
Length = 669
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 350 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 301
>gb|DR168614.1|DR168614 RTPHOS1_26_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_26_E04_A029 5', mRNA sequence
Length = 590
Score = 52.0 bits (26), Expect = 3e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 454 tgcccttgctacaacaactggaagacacagcaaggtggccccaagtgccc 405
>gb|AW010040.1|AW010040 ST01G02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST01G02, mRNA sequence
Length = 489
Score = 48.1 bits (24), Expect = 5e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccct 527
||||| |||||||||||||||| ||| ||| || ||||||||||||||||
Sbjct: 358 tgcccttgctacaacaactggaggactcagcaaggcggccccaagtgcccct 409
>gb|BE656756.1|BE656756 NXCI_056_E06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_056_E06 5' similar to Arabidopsis
thaliana sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 48.1 bits (24), Expect = 5e-004
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 334 tgcccttgctacaacaactggaagactcagcaaggannccccaagtgccc 383
>gb|BG275492.1|BG275492 NXSI_139_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_E06 5' similar to Arabidopsis thaliana
sequence At3g02885 GASA5 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 48.1 bits (24), Expect = 5e-004
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagaccaagcggggaggccccaagtgccc 525
||||| |||||||||||||||||||| ||| |||| |||||||||||
Sbjct: 334 tgcccttgctacaacaactggaagactcagcaaggagnncccaagtgccc 383
>gb|AW587726.1|AW587726 ST66A04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST66A04, mRNA sequence
Length = 463
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 476 tgcccctgctacaacaactggaagac 501
||||| ||||||||||||||||||||
Sbjct: 352 tgcccttgctacaacaactggaagac 377
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,725
Number of Sequences: 355925
Number of extensions: 83725
Number of successful extensions: 19253
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19151
Number of HSP's gapped (non-prelim): 99
length of query: 658
length of database: 217,277,237
effective HSP length: 19
effective length of query: 639
effective length of database: 210,514,662
effective search space: 134518869018
effective search space used: 134518869018
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)