BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX650126.1|CX650126 COLD1_43_E03.g1_A029 Root cold Pinus... 54 9e-006
gb|AW981906.1|AW981906 PC20B06 Pine TriplEx pollen cone lib... 48 5e-004
gb|CF476178.1|CF476178 RTWW2_21_H05.g1_A021 Well-watered lo... 48 5e-004
gb|BQ106803.1|BQ106803 NXLV089_E08_F NXLV (Nsf Xylem Late w... 46 0.002
gb|DR059539.1|DR059539 RTNIT1_18_F11.b1_A029 Roots minus ni... 46 0.002
gb|DR059626.1|DR059626 RTNIT1_18_F11.g1_A029 Roots minus ni... 46 0.002
gb|AW587630.1|AW587630 ST60G02 Pine TriplEx shoot tip libra... 44 0.008
gb|BX249871.1|BX249871 BX249871 Pinus pinaster differenciat... 44 0.008
gb|BX253362.1|BX253362 BX253362 Pinus pinaster differenciat... 44 0.008
gb|BX255135.1|BX255135 BX255135 Pinus pinaster differenciat... 44 0.008
gb|AW784115.1|AW784115 NXNV_103_C07_F Nsf Xylem Normal wood... 44 0.008
gb|BE582056.1|BE582056 NXCI_023_F12_F NXCI (Nsf Xylem Compr... 44 0.008
gb|BF220748.1|BF220748 NXCI_150_B10_F NXCI (Nsf Xylem Compr... 44 0.008
gb|BF609021.1|BF609021 NXSI_039_E03_F NXSI (Nsf Xylem Side ... 44 0.008
gb|BF778068.1|BF778068 NXSI_081_E10_F NXSI (Nsf Xylem Side ... 44 0.008
gb|BM157630.1|BM157630 NXLV_023_E07_F NXLV (Nsf Xylem Late ... 44 0.008
gb|BM428210.1|BM428210 NXRV_013_G10_F NXRV (Nsf Xylem Root ... 44 0.008
gb|BQ701806.1|BQ701806 NXSI_120_G06_F NXSI (Nsf Xylem Side ... 44 0.008
gb|BQ702354.1|BQ702354 NXSI_127_G02_F NXSI (Nsf Xylem Side ... 44 0.008
gb|BQ702912.1|BQ702912 NXSI_134_A11_F NXSI (Nsf Xylem Side ... 44 0.008
gb|BQ703007.1|BQ703007 NXSI_135_D06_F NXSI (Nsf Xylem Side ... 44 0.008
gb|CF385087.1|CF385087 RTDR1_1_G02.g1_A015 Loblolly pine ro... 44 0.008
gb|CF385872.1|CF385872 RTDR1_6_H05.g1_A015 Loblolly pine ro... 44 0.008
gb|CF386155.1|CF386155 RTDR1_8_C01.g1_A015 Loblolly pine ro... 44 0.008
gb|CF387746.1|CF387746 RTDR1_19_H03.g1_A015 Loblolly pine r... 44 0.008
gb|CF387842.1|CF387842 RTDR1_18_C06.g1_A015 Loblolly pine r... 44 0.008
gb|CF389949.1|CF389949 RTDR2_11_H11.g1_A021 Loblolly pine r... 44 0.008
gb|CF391686.1|CF391686 RTDR3_11_H05.g1_A022 Loblolly pine r... 44 0.008
gb|CF392881.1|CF392881 RTDR3_19_H11.g1_A022 Loblolly pine r... 44 0.008
gb|CF399652.1|CF399652 RTDS3_25_H05.b1_A022 Drought-stresse... 44 0.008
gb|CF399696.1|CF399696 RTDS3_25_H05.g1_A022 Drought-stresse... 44 0.008
gb|CF400133.1|CF400133 RTWW1_3_C01.g1_A015 Well-watered lob... 44 0.008
gb|CF401098.1|CF401098 RTWW1_10_H01.b1_A015 Well-watered lo... 44 0.008
gb|CF401143.1|CF401143 RTWW1_10_H01.g1_A015 Well-watered lo... 44 0.008
gb|CF471673.1|CF471673 RTDS1_6_C11.b1_A015 Drought-stressed... 44 0.008
gb|CF471802.1|CF471802 RTDS1_6_C11.g1_A015 Drought-stressed... 44 0.008
gb|CF476206.1|CF476206 RTWW2_21_B12.g1_A021 Well-watered lo... 44 0.008
gb|CF668723.1|CF668723 RTCNT1_38_F09.b1_A029 Root control P... 44 0.008
gb|CF668805.1|CF668805 RTCNT1_38_F09.g1_A029 Root control P... 44 0.008
gb|CF668853.1|CF668853 RTCNT1_39_C07.b1_A029 Root control P... 44 0.008
gb|CF668937.1|CF668937 RTCNT1_39_C07.g1_A029 Root control P... 44 0.008
gb|CF669446.1|CF669446 RTCNT1_43_B05.g1_A029 Root control P... 44 0.008
gb|CF670605.1|CF670605 RTCNT1_51_G09.b1_A029 Root control P... 44 0.008
gb|CF670681.1|CF670681 RTCNT1_51_G09.g1_A029 Root control P... 44 0.008
gb|CF671810.1|CF671810 RTCNT1_59_A02.g1_A029 Root control P... 44 0.008
gb|BX677181.1|BX677181 BX677181 RN Pinus pinaster cDNA clon... 44 0.008
gb|BX677183.1|BX677183 BX677183 RN Pinus pinaster cDNA clon... 44 0.008
gb|BX679278.1|BX679278 BX679278 RS Pinus pinaster cDNA clon... 44 0.008
gb|BX680581.1|BX680581 BX680581 RS Pinus pinaster cDNA clon... 44 0.008
gb|BX680939.1|BX680939 BX680939 RS Pinus pinaster cDNA clon... 44 0.008
gb|BX784306.1|BX784306 BX784306 Pinus pinaster differenciat... 44 0.008
gb|CR394125.1|CR394125 CR394125 RN Pinus pinaster cDNA clon... 44 0.008
gb|CN784808.1|CN784808 EST783499 Sequencing ESTs from loblo... 44 0.008
gb|CN784892.1|CN784892 EST783583 Sequencing ESTs from loblo... 44 0.008
gb|CO162426.1|CO162426 FLD1_35_E12.b1_A029 Root flooded Pin... 44 0.008
gb|CO162503.1|CO162503 FLD1_35_E12.g1_A029 Root flooded Pin... 44 0.008
gb|CO199045.1|CO199045 GEO1_18_H11.b1_A029 Root gravitropis... 44 0.008
gb|CO199046.1|CO199046 GEO1_18_H12.b1_A029 Root gravitropis... 44 0.008
gb|CO199113.1|CO199113 GEO1_18_H12.g1_A029 Root gravitropis... 44 0.008
gb|CO410698.1|CO410698 EST841083 Sequencing ESTs from loblo... 44 0.008
gb|CO414448.1|CO414448 EST844833 Sequencing ESTs from loblo... 44 0.008
gb|CO414472.1|CO414472 EST844857 Sequencing ESTs from loblo... 44 0.008
gb|CO414587.1|CO414587 EST844972 Sequencing ESTs from loblo... 44 0.008
gb|CV034325.1|CV034325 RTNACL1_40_D09.b1_A029 Roots plus ad... 44 0.008
gb|CV034394.1|CV034394 RTNACL1_40_D09.g1_A029 Roots plus ad... 44 0.008
gb|CV035060.1|CV035060 RTNACL1_13_G12.b1_A029 Roots plus ad... 44 0.008
gb|CV035140.1|CV035140 RTNACL1_13_G12.g1_A029 Roots plus ad... 44 0.008
gb|CV134568.1|CV134568 EST845777 Sequencing ESTs from loblo... 44 0.008
gb|CV136921.1|CV136921 EST848130 Sequencing ESTs from loblo... 44 0.008
gb|CV137200.1|CV137200 EST848409 Sequencing ESTs from loblo... 44 0.008
gb|CV137366.1|CV137366 EST848575 Sequencing ESTs from loblo... 44 0.008
gb|CV137698.1|CV137698 EST848907 Sequencing ESTs from loblo... 44 0.008
gb|CV138845.1|CV138845 EST850054 Sequencing ESTs from loblo... 44 0.008
gb|CV138962.1|CV138962 EST850171 Sequencing ESTs from loblo... 44 0.008
gb|CV143879.1|CV143879 EST855088 Sequencing ESTs from loblo... 44 0.008
gb|CV145055.1|CV145055 EST856264 Sequencing ESTs from loblo... 44 0.008
gb|CV146660.1|CV146660 EST857869 Sequencing ESTs from loblo... 44 0.008
gb|CV147490.1|CV147490 EST858699 Sequencing ESTs from loblo... 44 0.008
gb|CV148121.1|CV148121 EST859330 Sequencing ESTs from loblo... 44 0.008
gb|CX646700.1|CX646700 COLD1_11_A09.b1_A029 Root cold Pinus... 44 0.008
gb|CX646772.1|CX646772 COLD1_11_A09.g1_A029 Root cold Pinus... 44 0.008
gb|CX648035.1|CX648035 COLD1_26_D02.b1_A029 Root cold Pinus... 44 0.008
gb|CX649282.1|CX649282 COLD1_34_E07.b1_A029 Root cold Pinus... 44 0.008
gb|CX649362.1|CX649362 COLD1_34_E07.g1_A029 Root cold Pinus... 44 0.008
gb|CX649698.1|CX649698 COLD1_41_A03.b1_A029 Root cold Pinus... 44 0.008
gb|CX650753.1|CX650753 COLD1_47_H04.g1_A029 Root cold Pinus... 44 0.008
gb|CX651070.1|CX651070 COLD1_50_A01.b1_A029 Root cold Pinus... 44 0.008
gb|CX651139.1|CX651139 COLD1_50_A01.g1_A029 Root cold Pinus... 44 0.008
gb|CX652733.1|CX652733 COLD1_61_D05.b1_A029 Root cold Pinus... 44 0.008
gb|DN445875.1|DN445875 EST941674 Sequencing ESTs from loblo... 44 0.008
gb|DN448125.1|DN448125 EST943924 Sequencing ESTs from loblo... 44 0.008
gb|DN450458.1|DN450458 EST946257 Sequencing ESTs from loblo... 44 0.008
gb|DN451566.1|DN451566 EST947365 Sequencing ESTs from loblo... 44 0.008
gb|DN452051.1|DN452051 EST947850 Sequencing ESTs from loblo... 44 0.008
gb|DN454397.1|DN454397 EST950196 Sequencing ESTs from loblo... 44 0.008
gb|DN454438.1|DN454438 EST950237 Sequencing ESTs from loblo... 44 0.008
gb|DN454763.1|DN454763 EST950562 Sequencing ESTs from loblo... 44 0.008
gb|DN455691.1|DN455691 EST951490 Sequencing ESTs from loblo... 44 0.008
gb|DN455925.1|DN455925 EST951724 Sequencing ESTs from loblo... 44 0.008
gb|DN456600.1|DN456600 EST952399 Sequencing ESTs from loblo... 44 0.008
gb|DN456759.1|DN456759 EST952558 Sequencing ESTs from loblo... 44 0.008
gb|DN457367.1|DN457367 EST953166 Sequencing ESTs from loblo... 44 0.008
gb|DN458505.1|DN458505 EST954304 Sequencing ESTs from loblo... 44 0.008
gb|DN459219.1|DN459219 EST955018 Sequencing ESTs from loblo... 44 0.008
gb|DN459633.1|DN459633 EST955432 Sequencing ESTs from loblo... 44 0.008
gb|DN459654.1|DN459654 EST955453 Sequencing ESTs from loblo... 44 0.008
gb|DN459814.1|DN459814 EST955613 Sequencing ESTs from loblo... 44 0.008
gb|DN460344.1|DN460344 EST956143 Sequencing ESTs from loblo... 44 0.008
gb|DN462006.1|DN462006 EST957805 Sequencing ESTs from loblo... 44 0.008
gb|DN463092.1|DN463092 EST958891 Sequencing ESTs from loblo... 44 0.008
gb|DN463694.1|DN463694 EST959493 Sequencing ESTs from loblo... 44 0.008
gb|DN463954.1|DN463954 EST959753 Sequencing ESTs from loblo... 44 0.008
gb|DN464534.1|DN464534 EST960333 Sequencing ESTs from loblo... 44 0.008
gb|DN465178.1|DN465178 EST960977 Sequencing ESTs from loblo... 44 0.008
gb|DN465596.1|DN465596 EST961395 Sequencing ESTs from loblo... 44 0.008
gb|DR014731.1|DR014731 HEAT1_51_G01.b1_A029 Root at 37 C fo... 44 0.008
gb|DR014816.1|DR014816 HEAT1_51_G01.g1_A029 Root at 37 C fo... 44 0.008
gb|DR048253.1|DR048253 RTBOR1_7_C01.g2_A029 Roots plus adde... 44 0.008
gb|DR052258.1|DR052258 RTCA1_3_A09.g1_A029 Roots minus calc... 44 0.008
gb|DR068807.1|DR068807 RTDK1_3_B05.b1_A029 Roots, dark Pinu... 44 0.008
gb|DR068889.1|DR068889 RTDK1_3_B05.g1_A029 Roots, dark Pinu... 44 0.008
gb|DR079288.1|DR079288 RTFEPL1_10_G05.b1_A029 Roots plus ad... 44 0.008
gb|DR079366.1|DR079366 RTFEPL1_10_G05.g1_A029 Roots plus ad... 44 0.008
gb|DR080639.1|DR080639 RTFEPL1_24_D07.b1_A029 Roots plus ad... 44 0.008
gb|DR091314.1|DR091314 RTAL1_20_F08.g1_A029 Roots plus adde... 44 0.008
gb|DR096050.1|DR096050 STRR1_25_A06.g1_A033 Stem Response R... 44 0.008
gb|DR096590.1|DR096590 STRR1_28_H10.g1_A033 Stem Response R... 44 0.008
gb|DR099377.1|DR099377 STRR1_55_E04.b1_A033 Stem Response R... 44 0.008
gb|DR099452.1|DR099452 STRR1_55_E04.g1_A033 Stem Response R... 44 0.008
gb|DR100509.1|DR100509 STRR1_64_E06.g1_A033 Stem Response R... 44 0.008
gb|DR102122.1|DR102122 STRR1_78_D01.g1_A033 Stem Response R... 44 0.008
gb|DR169042.1|DR169042 RTPHOS1_29_C10.g1_A029 Roots minus p... 44 0.008
gb|DR743491.1|DR743491 RTCU1_16_F02.b1_A029 Roots plus adde... 44 0.008
gb|DR743565.1|DR743565 RTCU1_16_F02.g1_A029 Roots plus adde... 44 0.008
gb|DR744513.1|DR744513 RTCU1_23_A10.b1_A029 Roots plus adde... 44 0.008
gb|DR744580.1|DR744580 RTCU1_23_A10.g1_A029 Roots plus adde... 44 0.008
gb|DR745550.1|DR745550 RTCU1_30_B05.g1_A029 Roots plus adde... 44 0.008
gb|DT626088.1|DT626088 EST1158012 Sequencing ESTs from lobl... 44 0.008
gb|DT626327.1|DT626327 EST1158251 Sequencing ESTs from lobl... 44 0.008
gb|BX252047.1|BX252047 BX252047 Pinus pinaster differenciat... 42 0.033
gb|CR393912.1|CR393912 CR393912 RN Pinus pinaster cDNA clon... 42 0.033
gb|DR162316.1|DR162316 RTFE1_17_C10.b1_A029 Roots minus iro... 42 0.033
gb|DR050112.1|DR050112 RTBOR1_21_H03.b1_A029 Roots plus add... 40 0.13
gb|DR070336.1|DR070336 RTDK1_12_E04.g1_A029 Roots, dark Pin... 40 0.13
>gb|CX650126.1|CX650126 COLD1_43_E03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_E03_A029 5', mRNA sequence
Length = 739
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 248 gggtgggtgcactacgcgatccaccgcccggagccgcacatcatgct 294
|||||||||||||| || |||||||| || ||||| |||||||||||
Sbjct: 200 gggtgggtgcactatgctatccaccgtcctgagccacacatcatgct 246
>gb|AW981906.1|AW981906 PC20B06 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC20B06, mRNA sequence
Length = 506
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 245 cgcgggtgggtgcactacgcgatccaccgcccggagccgcacat 288
||||||||||||||||| || || |||||||| ||||| |||||
Sbjct: 359 cgcgggtgggtgcactatgccattcaccgccctgagccacacat 402
>gb|CF476178.1|CF476178 RTWW2_21_H05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_21_H05_A021 5', mRNA sequence
Length = 732
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 245 cgcgggtgggtgcactacgcgatccaccgcccggagccgcacat 288
||||||||||||||||| || || |||||||| ||||| |||||
Sbjct: 309 cgcgggtgggtgcactatgccattcaccgccctgagccacacat 352
>gb|BQ106803.1|BQ106803 NXLV089_E08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV089_E08 5' similar to Arabidopsis thaliana
sequence At2g27960 putative cyclin-dependent kinase
regulatory subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 535
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 248 gggtgggtgcactacgcgatccaccgcccggagccgcacatcatgct 294
|||||||||||||| || |||||||| || ||||| ||||| |||||
Sbjct: 245 gggtgggtgcactatgctatccaccgtcctgagccacacattatgct 291
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 110 cagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||| || ||||| |||| |||||| ||||| |||||||||||
Sbjct: 107 cagtattctgagaaatactacgacgatacctatgagtacaggca 150
>gb|DR059539.1|DR059539 RTNIT1_18_F11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_18_F11_A029 3', mRNA sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 248 gggtgggtgcactacgcgatccaccgcccggagccgcacatcatgct 294
|||||||||||||| || |||||||| || ||||| ||||| |||||
Sbjct: 38 gggtgggtgcactatgctatccaccgtcctgagccacacattatgct 84
>gb|DR059626.1|DR059626 RTNIT1_18_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_18_F11_A029 5', mRNA sequence
Length = 780
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 248 gggtgggtgcactacgcgatccaccgcccggagccgcacatcatgct 294
|||||||||||||| || |||||||| || ||||| ||||| |||||
Sbjct: 253 gggtgggtgcactatgctatccaccgtcctgagccacacattatgct 299
Score = 40.1 bits (20), Expect = 0.13
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 110 cagtactccgagaagtacttcgacgacacctacgagtacaggca 153
||||| || ||||| |||| |||||| ||||| |||||||||||
Sbjct: 115 cagtattctgagaaatactacgacgatacctatgagtacaggca 158
>gb|AW587630.1|AW587630 ST60G02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST60G02, mRNA sequence
Length = 401
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 98 cagcagcagcaggaggcggctg 77
>gb|BX249871.1|BX249871 BX249871 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP029F10, mRNA sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 106 cagcagcagcaggaggcggctg 85
>gb|BX253362.1|BX253362 BX253362 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP082C06, mRNA sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 222 cagcagcagcaggaggcggctg 201
>gb|BX255135.1|BX255135 BX255135 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP111E11, mRNA sequence
Length = 565
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 328 cagcagcagcaggaggcggctg 307
>gb|AW784115.1|AW784115 NXNV_103_C07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_103_C07 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 207
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 58 cagcagcagcaggaggcggctg 37
>gb|BE582056.1|BE582056 NXCI_023_F12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_023_F12 5' similar to Arabidopsis
thaliana sequence At1g69230 putative
nitrilase-associated protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 292
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 57 cagcagcagcaggaggcggctg 36
>gb|BF220748.1|BF220748 NXCI_150_B10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_150_B10 5', mRNA sequence
Length = 381
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 319 cagcagcagcaggaggcggctg 298
>gb|BF609021.1|BF609021 NXSI_039_E03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_039_E03 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 519
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 321 cagcagcagcaggaggcggctg 300
>gb|BF778068.1|BF778068 NXSI_081_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_081_E10 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 122 cagcagcagcaggaggcggctg 101
>gb|BM157630.1|BM157630 NXLV_023_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_023_E07 5', mRNA sequence
Length = 255
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 183 cagcagcagcaggaggcggctg 162
>gb|BM428210.1|BM428210 NXRV_013_G10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_013_G10 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 443
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 92 cagcagcagcaggaggcggctg 71
>gb|BQ701806.1|BQ701806 NXSI_120_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_120_G06 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 498
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 122 cagcagcagcaggaggcggctg 101
>gb|BQ702354.1|BQ702354 NXSI_127_G02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_127_G02 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 441
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 312 cagcagcagcaggaggcggctg 291
>gb|BQ702912.1|BQ702912 NXSI_134_A11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_134_A11 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 440
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 312 cagcagcagcaggaggcggctg 291
>gb|BQ703007.1|BQ703007 NXSI_135_D06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_135_D06 5' similar to Arabidopsis thaliana
sequence At1g69230 putative nitrilase-associated protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 315 cagcagcagcaggaggcggctg 294
>gb|CF385087.1|CF385087 RTDR1_1_G02.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_G02_A015 5', mRNA
sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 284 cagcagcagcaggaggcggctg 263
>gb|CF385872.1|CF385872 RTDR1_6_H05.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_6_H05_A015 5', mRNA
sequence
Length = 718
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 309 cagcagcagcaggaggcggctg 288
>gb|CF386155.1|CF386155 RTDR1_8_C01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_8_C01_A015 5', mRNA
sequence
Length = 744
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 253 cagcagcagcaggaggcggctg 232
>gb|CF387746.1|CF387746 RTDR1_19_H03.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_H03_A015 5', mRNA
sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 325 cagcagcagcaggaggcggctg 304
>gb|CF387842.1|CF387842 RTDR1_18_C06.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_18_C06_A015 5', mRNA
sequence
Length = 802
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 319 cagcagcagcaggaggcggctg 298
>gb|CF389949.1|CF389949 RTDR2_11_H11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_H11_A021 5', mRNA
sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 264 cagcagcagcaggaggcggctg 243
>gb|CF391686.1|CF391686 RTDR3_11_H05.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_11_H05_A022 5', mRNA
sequence
Length = 724
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 311 cagcagcagcaggaggcggctg 290
>gb|CF392881.1|CF392881 RTDR3_19_H11.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_19_H11_A022 5', mRNA
sequence
Length = 778
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 294 cagcagcagcaggaggcggctg 273
>gb|CF399652.1|CF399652 RTDS3_25_H05.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_25_H05_A022 3', mRNA sequence
Length = 499
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 84 cagcagcagcaggaggcggctg 63
>gb|CF399696.1|CF399696 RTDS3_25_H05.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_25_H05_A022 5', mRNA sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 293 cagcagcagcaggaggcggctg 272
>gb|CF400133.1|CF400133 RTWW1_3_C01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_C01_A015 5', mRNA sequence
Length = 547
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 322 cagcagcagcaggaggcggctg 301
>gb|CF401098.1|CF401098 RTWW1_10_H01.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_H01_A015 3', mRNA sequence
Length = 618
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 45 cagcagcagcaggaggcggctg 24
>gb|CF401143.1|CF401143 RTWW1_10_H01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_H01_A015 5', mRNA sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 346 cagcagcagcaggaggcggctg 325
>gb|CF471673.1|CF471673 RTDS1_6_C11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_C11_A015 3', mRNA sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 299 cagcagcagcaggaggcggctg 278
>gb|CF471802.1|CF471802 RTDS1_6_C11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_C11_A015 5', mRNA sequence
Length = 728
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 337 cagcagcagcaggaggcggctg 316
>gb|CF476206.1|CF476206 RTWW2_21_B12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_21_B12_A021 5', mRNA sequence
Length = 690
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 284 cagcagcagcaggaggcggctg 263
>gb|CF668723.1|CF668723 RTCNT1_38_F09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_F09_A029 3', mRNA sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 71 cagcagcagcaggaggcggctg 50
>gb|CF668805.1|CF668805 RTCNT1_38_F09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_F09_A029 5', mRNA sequence
Length = 743
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 266 cagcagcagcaggaggcggctg 245
>gb|CF668853.1|CF668853 RTCNT1_39_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_C07_A029 3', mRNA sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 71 cagcagcagcaggaggcggctg 50
>gb|CF668937.1|CF668937 RTCNT1_39_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_C07_A029 5', mRNA sequence
Length = 762
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 286 cagcagcagcaggaggcggctg 265
>gb|CF669446.1|CF669446 RTCNT1_43_B05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_43_B05_A029 5', mRNA sequence
Length = 795
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 266 cagcagcagcaggaggcggctg 245
>gb|CF670605.1|CF670605 RTCNT1_51_G09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_51_G09_A029 3', mRNA sequence
Length = 643
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 70 cagcagcagcaggaggcggctg 49
>gb|CF670681.1|CF670681 RTCNT1_51_G09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_51_G09_A029 5', mRNA sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 264 cagcagcagcaggaggcggctg 243
>gb|CF671810.1|CF671810 RTCNT1_59_A02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_A02_A029 5', mRNA sequence
Length = 480
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 264 cagcagcagcaggaggcggctg 243
>gb|BX677181.1|BX677181 BX677181 RN Pinus pinaster cDNA clone RN18H05, mRNA sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 218 cagcagcagcaggaggcggctg 197
>gb|BX677183.1|BX677183 BX677183 RN Pinus pinaster cDNA clone RN18H07, mRNA sequence
Length = 288
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 218 cagcagcagcaggaggcggctg 197
>gb|BX679278.1|BX679278 BX679278 RS Pinus pinaster cDNA clone RS22D06, mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 203 cagcagcagcaggaggcggctg 182
>gb|BX680581.1|BX680581 BX680581 RS Pinus pinaster cDNA clone RS45D09, mRNA sequence
Length = 510
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 469 cagcagcagcaggaggcggctg 490
>gb|BX680939.1|BX680939 BX680939 RS Pinus pinaster cDNA clone RS51B11, mRNA sequence
Length = 583
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 317 cagcagcagcaggaggcggctg 338
||||||||||||||||||||||
Sbjct: 469 cagcagcagcaggaggcggctg 490
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,686
Number of Sequences: 355925
Number of extensions: 87686
Number of successful extensions: 22276
Number of sequences better than 0.5: 144
Number of HSP's better than 0.5 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22123
Number of HSP's gapped (non-prelim): 152
length of query: 779
length of database: 217,277,237
effective HSP length: 19
effective length of query: 760
effective length of database: 210,514,662
effective search space: 159991143120
effective search space used: 159991143120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)