BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763196.2.1
(2766 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR167456.1|DR167456 RTPHOS1_18_H08.g1_A029 Roots minus p... 46 0.008
gb|CX649256.1|CX649256 COLD1_34_B11.b1_A029 Root cold Pinus... 42 0.12
gb|CX649331.1|CX649331 COLD1_34_B11.g1_A029 Root cold Pinus... 42 0.12
gb|DR017652.1|DR017652 STRS1_17_D09.g1_A034 Shoot tip pitch... 42 0.12
gb|DR167589.1|DR167589 RTPHOS1_19_F09.g1_A029 Roots minus p... 42 0.12
gb|BQ701720.1|BQ701720 NXSI_118_G12_F NXSI (Nsf Xylem Side ... 40 0.48
gb|CF392364.1|CF392364 RTDR3_7_A01.g1_A022 Loblolly pine ro... 40 0.48
gb|CF395277.1|CF395277 RTDS2_10_F04.g1_A021 Drought-stresse... 40 0.48
gb|CF395729.1|CF395729 RTDS2_16_A12.g1_A021 Drought-stresse... 40 0.48
gb|CF399239.1|CF399239 RTDS3_27_G04.g1_A022 Drought-stresse... 40 0.48
gb|CO164031.1|CO164031 FLD1_45_H06.b1_A029 Root flooded Pin... 40 0.48
gb|CO164110.1|CO164110 FLD1_45_H06.g1_A029 Root flooded Pin... 40 0.48
gb|CO170308.1|CO170308 NDL1_13_E01.b1_A029 Needles control ... 40 0.48
gb|CO171614.1|CO171614 NDL1_23_D11.b1_A029 Needles control ... 40 0.48
gb|CO171674.1|CO171674 NDL1_23_D11.g1_A029 Needles control ... 40 0.48
gb|CO173145.1|CO173145 NDL1_34_G09.b1_A029 Needles control ... 40 0.48
gb|CO174344.1|CO174344 NDL1_43_A08.g1_A029 Needles control ... 40 0.48
gb|CO174915.1|CO174915 NDL1_47_C09.b1_A029 Needles control ... 40 0.48
gb|CO175236.1|CO175236 NDL1_53_A02.g1_A029 Needles control ... 40 0.48
gb|CO175238.1|CO175238 NDL1_53_A05.g1_A029 Needles control ... 40 0.48
gb|CO175412.1|CO175412 NDL1_54_C07.g1_A029 Needles control ... 40 0.48
gb|CO176240.1|CO176240 NDL1_60_F02.g1_A029 Needles control ... 40 0.48
gb|CO198237.1|CO198237 GEO1_12_E12.b1_A029 Root gravitropis... 40 0.48
gb|CO198306.1|CO198306 GEO1_12_E12.g1_A029 Root gravitropis... 40 0.48
gb|CO362209.1|CO362209 RTK1_2_C05.b1_A029 Roots minus potas... 40 0.48
gb|CO362280.1|CO362280 RTK1_2_C05.g1_A029 Roots minus potas... 40 0.48
gb|CX650732.1|CX650732 COLD1_47_F03.g1_A029 Root cold Pinus... 40 0.48
gb|CX651475.1|CX651475 COLD1_52_D08.g1_A029 Root cold Pinus... 40 0.48
gb|CX651610.1|CX651610 COLD1_53_C10.g1_A029 Root cold Pinus... 40 0.48
gb|CX652660.1|CX652660 COLD1_60_D11.g1_A029 Root cold Pinus... 40 0.48
gb|DR012665.1|DR012665 HEAT1_14_F09.b1_A029 Root at 37 C fo... 40 0.48
gb|DR023358.1|DR023358 STRS1_57_C05.b1_A034 Shoot tip pitch... 40 0.48
gb|DR048350.1|DR048350 RTBOR1_8_F07.b2_A029 Roots plus adde... 40 0.48
gb|DR048413.1|DR048413 RTBOR1_8_F07.g2_A029 Roots plus adde... 40 0.48
gb|DR096497.1|DR096497 STRR1_28_H02.b1_A033 Stem Response R... 40 0.48
gb|DR096582.1|DR096582 STRR1_28_H02.g1_A033 Stem Response R... 40 0.48
gb|DR384463.1|DR384463 RTHG1_2_A02.g1_A029 Roots plus added... 40 0.48
gb|DR387916.1|DR387916 RTHG1_25_B09.b1_A029 Roots plus adde... 40 0.48
gb|DR387992.1|DR387992 RTHG1_25_B09.g1_A029 Roots plus adde... 40 0.48
gb|DR685686.1|DR685686 EST1075763 Normalized pine embryo li... 40 0.48
gb|DR694192.1|DR694192 EST1084283 Normalized pine embryo li... 40 0.48
gb|DT632995.1|DT632995 EST1147926 Normalized pine embryo li... 40 0.48
gb|DT638543.1|DT638543 EST1153474 Normalized pine embryo li... 40 0.48
dbj|BD267200.1| Compositions isolated from plant cells and ... 40 0.48
>gb|DR167456.1|DR167456 RTPHOS1_18_H08.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_18_H08_A029 5', mRNA sequence
Length = 793
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1141 ccaaatcctccttctccaagcttgtta 1167
||||||||||| |||||||||||||||
Sbjct: 471 ccaaatcctccctctccaagcttgtta 445
>gb|CX649256.1|CX649256 COLD1_34_B11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_B11_A029 3', mRNA sequence
Length = 631
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 369 aaggatgacagtggggatgtc 389
|||||||||||||||||||||
Sbjct: 181 aaggatgacagtggggatgtc 201
>gb|CX649331.1|CX649331 COLD1_34_B11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_B11_A029 5', mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 369 aaggatgacagtggggatgtc 389
|||||||||||||||||||||
Sbjct: 164 aaggatgacagtggggatgtc 184
>gb|DR017652.1|DR017652 STRS1_17_D09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_D09_A034 5', mRNA sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 369 aaggatgacagtggggatgtc 389
|||||||||||||||||||||
Sbjct: 359 aaggatgacagtggggatgtc 379
>gb|DR167589.1|DR167589 RTPHOS1_19_F09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_F09_A029 5', mRNA sequence
Length = 805
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 369 aaggatgacagtggggatgtc 389
|||||||||||||||||||||
Sbjct: 495 aaggatgacagtggggatgtc 475
>gb|BQ701720.1|BQ701720 NXSI_118_G12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_118_G12 5' similar to Arabidopsis thaliana
sequence At4g23180 receptor-like protein kinase 4 (RLK4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1141 ccaaatcctccttctccaagcttgttag 1168
||||| ||||| ||||||||||||||||
Sbjct: 49 ccaaagcctccctctccaagcttgttag 22
>gb|CF392364.1|CF392364 RTDR3_7_A01.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_A01_A022 5', mRNA sequence
Length = 168
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1141 ccaaatcctccttctccaag 1160
||||||||||||||||||||
Sbjct: 150 ccaaatcctccttctccaag 131
>gb|CF395277.1|CF395277 RTDS2_10_F04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_10_F04_A021 5', mRNA sequence
Length = 767
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 402 aggatgacagtggggatgtc 421
>gb|CF395729.1|CF395729 RTDS2_16_A12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_A12_A021 5', mRNA sequence
Length = 745
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 376 aggatgacagtggggatgtc 395
>gb|CF399239.1|CF399239 RTDS3_27_G04.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G04_A022 5', mRNA sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 359 aggatgacagtggggatgtc 378
>gb|CO164031.1|CO164031 FLD1_45_H06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_H06_A029 3', mRNA sequence
Length = 937
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 539 aggatgacagtggggatgtc 520
>gb|CO164110.1|CO164110 FLD1_45_H06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_H06_A029 5', mRNA sequence
Length = 899
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 768 aggatgacagtggggatgtc 749
>gb|CO170308.1|CO170308 NDL1_13_E01.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_E01_A029 3', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 327 aggatgacagtggggatgtc 308
>gb|CO171614.1|CO171614 NDL1_23_D11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_23_D11_A029 3', mRNA sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 124 aggatgacagtggggatgtc 143
>gb|CO171674.1|CO171674 NDL1_23_D11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_23_D11_A029 5', mRNA sequence
Length = 462
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 367 aggatgacagtggggatgtc 386
>gb|CO173145.1|CO173145 NDL1_34_G09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_34_G09_A029 3', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 477 aggatgacagtggggatgtc 458
>gb|CO174344.1|CO174344 NDL1_43_A08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_43_A08_A029 5', mRNA sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 262 aggatgacagtggggatgtc 281
>gb|CO174915.1|CO174915 NDL1_47_C09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_47_C09_A029 3', mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 520 aggatgacagtggggatgtc 501
>gb|CO175236.1|CO175236 NDL1_53_A02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_A02_A029 5', mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 267 aggatgacagtggggatgtc 286
>gb|CO175238.1|CO175238 NDL1_53_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_A05_A029 5', mRNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 230 aggatgacagtggggatgtc 249
>gb|CO175412.1|CO175412 NDL1_54_C07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_54_C07_A029 5', mRNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 254 aggatgacagtggggatgtc 273
>gb|CO176240.1|CO176240 NDL1_60_F02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_F02_A029 5', mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 378 aggatgacagtggggatgtc 397
>gb|CO198237.1|CO198237 GEO1_12_E12.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_12_E12_A029 3', mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 105 aggatgacagtggggatgtc 124
>gb|CO198306.1|CO198306 GEO1_12_E12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_12_E12_A029 5', mRNA sequence
Length = 796
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 345 aggatgacagtggggatgtc 364
>gb|CO362209.1|CO362209 RTK1_2_C05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_2_C05_A029 3', mRNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 139 aggatgacagtggggatgtc 158
>gb|CO362280.1|CO362280 RTK1_2_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_2_C05_A029 5', mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 379 aggatgacagtggggatgtc 398
>gb|CX650732.1|CX650732 COLD1_47_F03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_F03_A029 5', mRNA sequence
Length = 827
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 533 aggatgacagtggggatgtc 514
>gb|CX651475.1|CX651475 COLD1_52_D08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D08_A029 5', mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 373 aggatgacagtggggatgtc 392
>gb|CX651610.1|CX651610 COLD1_53_C10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_C10_A029 5', mRNA sequence
Length = 736
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 538 aggatgacagtggggatgtc 557
>gb|CX652660.1|CX652660 COLD1_60_D11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_60_D11_A029 5', mRNA sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 588 aggatgacagtggggatgtc 569
>gb|DR012665.1|DR012665 HEAT1_14_F09.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_F09_A029 3', mRNA sequence
Length = 800
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 453 aggatgacagtggggatgtc 434
>gb|DR023358.1|DR023358 STRS1_57_C05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_57_C05_A034 3', mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 122 aggatgacagtggggatgtc 141
>gb|DR048350.1|DR048350 RTBOR1_8_F07.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_F07_A029 3', mRNA sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 154 aggatgacagtggggatgtc 173
>gb|DR048413.1|DR048413 RTBOR1_8_F07.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_F07_A029 5', mRNA sequence
Length = 821
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 392 aggatgacagtggggatgtc 411
>gb|DR096497.1|DR096497 STRR1_28_H02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_28_H02_A033 3', mRNA sequence
Length = 861
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 496 aggatgacagtggggatgtc 477
>gb|DR096582.1|DR096582 STRR1_28_H02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_28_H02_A033 5', mRNA sequence
Length = 754
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 523 aggatgacagtggggatgtc 504
>gb|DR384463.1|DR384463 RTHG1_2_A02.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_2_A02_A029 5', mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 396 aggatgacagtggggatgtc 415
>gb|DR387916.1|DR387916 RTHG1_25_B09.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_B09_A029 3', mRNA sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 93 aggatgacagtggggatgtc 112
>gb|DR387992.1|DR387992 RTHG1_25_B09.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_B09_A029 5', mRNA sequence
Length = 831
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 346 aggatgacagtggggatgtc 365
>gb|DR685686.1|DR685686 EST1075763 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB671 3' end, mRNA sequence
Length = 819
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1141 ccaaatcctccttctccaag 1160
||||||||||||||||||||
Sbjct: 551 ccaaatcctccttctccaag 532
>gb|DR694192.1|DR694192 EST1084283 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE924 3' end, mRNA sequence
Length = 762
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 426 aggatgacagtggggatgtc 445
>gb|DT632995.1|DT632995 EST1147926 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFQ05 3' end, mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1141 ccaaatcctccttctccaag 1160
||||||||||||||||||||
Sbjct: 559 ccaaatcctccttctccaag 540
>gb|DT638543.1|DT638543 EST1153474 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHG41 3' end, mRNA sequence
Length = 839
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 370 aggatgacagtggggatgtc 389
||||||||||||||||||||
Sbjct: 434 aggatgacagtggggatgtc 453
>dbj|BD267200.1| Compositions isolated from plant cells and utilization of the same in
modifying plant cell signal transduction
Length = 452
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1141 ccaaatcctccttctccaagcttgttag 1168
||||| ||||| ||||||||||||||||
Sbjct: 425 ccaaagcctccctctccaagcttgttag 398
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 316,245
Number of Sequences: 355925
Number of extensions: 316245
Number of successful extensions: 84913
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84821
Number of HSP's gapped (non-prelim): 92
length of query: 2766
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2746
effective length of database: 210,158,737
effective search space: 577095891802
effective search space used: 577095891802
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)