BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763121.2.1
(1190 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF385091.1|CF385091 RTDR1_1_H08.g1_A015 Loblolly pine ro... 56 3e-006
gb|CF386345.1|CF386345 RTDR1_13_H08.g1_A015 Loblolly pine r... 56 3e-006
gb|CF387078.1|CF387078 RTDR1_10_H09.g1_A015 Loblolly pine r... 56 3e-006
gb|CF387597.1|CF387597 RTDR1_20_H12.g1_A015 Loblolly pine r... 56 3e-006
gb|CF387636.1|CF387636 RTDR1_19_C02.b1_A015 Loblolly pine r... 56 3e-006
gb|CF391571.1|CF391571 RTDR3_9_C02.g1_A022 Loblolly pine ro... 56 3e-006
gb|CF400173.1|CF400173 RTWW1_3_F07.g1_A015 Well-watered lob... 56 3e-006
gb|CF401192.1|CF401192 RTWW1_10_H07.g1_A015 Well-watered lo... 56 3e-006
gb|CF476953.1|CF476953 RTWW3_4_G10.g1_A022 Well-watered lob... 56 3e-006
gb|DR021427.1|DR021427 STRS1_44_C09.g1_A034 Shoot tip pitch... 56 3e-006
gb|DR088958.1|DR088958 RTAL1_5_E09.g1_A029 Roots plus added... 56 3e-006
gb|DR099898.1|DR099898 STRR1_59_E08.g1_A033 Stem Response R... 56 3e-006
gb|DR102256.1|DR102256 STRR1_79_E02.g1_A033 Stem Response R... 56 3e-006
gb|DR742871.1|DR742871 RTCU1_7_C01.g2_A029 Roots plus added... 56 3e-006
gb|CR393302.1|CR393302 CR393302 RN Pinus pinaster cDNA clon... 50 2e-004
gb|CZ895070.1|CZ895070 204_1_12063805_3_37678_081 Pine meth... 48 8e-004
gb|AL750501.1|AL750501 AL750501 RN Pinus pinaster cDNA clon... 48 8e-004
gb|CF386681.1|CF386681 RTDR1_16_G03.b1_A015 Loblolly pine r... 48 8e-004
gb|CF665191.1|CF665191 RTCNT1_14_A12.g1_A029 Root control P... 48 8e-004
gb|CR393261.1|CR393261 CR393261 RN Pinus pinaster cDNA clon... 48 8e-004
gb|CO159824.1|CO159824 FLD1_16_E07.b1_A029 Root flooded Pin... 48 8e-004
gb|CO165441.1|CO165441 FLD1_54_C07.g1_A029 Root flooded Pin... 48 8e-004
gb|DR016861.1|DR016861 STRS1_12_D06.g1_A034 Shoot tip pitch... 48 8e-004
gb|DR019353.1|DR019353 STRS1_29_B01.g1_A034 Shoot tip pitch... 48 8e-004
gb|DR019654.1|DR019654 STRS1_31_B07.g1_A034 Shoot tip pitch... 48 8e-004
gb|DR021011.1|DR021011 STRS1_40_F08.g1_A034 Shoot tip pitch... 48 8e-004
gb|DR050073.1|DR050073 RTBOR1_21_D02.b1_A029 Roots plus add... 48 8e-004
gb|DR092479.1|DR092479 STRR1_1_D06.g1_A033 Stem Response Re... 48 8e-004
gb|DR095060.1|DR095060 STRR1_18_C01.g1_A033 Stem Response R... 48 8e-004
gb|DR098171.1|DR098171 STRR1_39_C08.g1_A033 Stem Response R... 48 8e-004
gb|DR099813.1|DR099813 STRR1_58_F12.g1_A033 Stem Response R... 48 8e-004
gb|DR102098.1|DR102098 STRR1_78_A01.g1_A033 Stem Response R... 48 8e-004
gb|DR163369.1|DR163369 RTFE1_42_B11.g1_A029 Roots minus iro... 48 8e-004
gb|DR166815.1|DR166815 RTPHOS1_14_E01.g1_A029 Roots minus p... 48 8e-004
gb|DR388727.1|DR388727 RTHG1_30_D05.b1_A029 Roots plus adde... 48 8e-004
gb|DR743557.1|DR743557 RTCU1_16_E06.g1_A029 Roots plus adde... 48 8e-004
gb|DR744454.1|DR744454 RTCU1_22_C07.g1_A029 Roots plus adde... 48 8e-004
dbj|BD224562.1| Materials and methods for the modification ... 48 8e-004
dbj|BD224564.1| Materials and methods for the modification ... 48 8e-004
gb|CF666571.1|CF666571 RTCNT1_24_G05.b1_A029 Root control P... 46 0.003
gb|CX713784.1|CX713784 RTPQ1_13_C10.b1_A032 Roots treated w... 46 0.003
gb|DR056875.1|DR056875 RTNIT1_1_D03.b1_A029 Roots minus nit... 46 0.003
gb|DR060481.1|DR060481 RTNIT1_28_C11.b1_A029 Roots minus ni... 46 0.003
gb|DR097542.1|DR097542 STRR1_35_H07.b1_A033 Stem Response R... 46 0.003
gb|DR097614.1|DR097614 STRR1_35_H07.g4_A033 Stem Response R... 46 0.003
gb|DR098747.1|DR098747 STRR1_47_D05.g1_A033 Stem Response R... 46 0.003
gb|DR098899.1|DR098899 STRR1_48_D05.g1_A033 Stem Response R... 46 0.003
gb|DR100064.1|DR100064 STRR1_61_G12.b1_A033 Stem Response R... 46 0.003
gb|BG040407.1|BG040407 NXSI_107_H09_F NXSI (Nsf Xylem Side ... 44 0.013
gb|CF384952.1|CF384952 RTDR1_1_B07.b1_A015 Loblolly pine ro... 44 0.013
gb|CF386497.1|CF386497 RTDR1_14_C02.g1_A015 Loblolly pine r... 44 0.013
gb|CF388515.1|CF388515 RTDR2_3_F02.g1_A021 Loblolly pine ro... 44 0.013
gb|CF390326.1|CF390326 RTDR2_18_B09.g1_A021 Loblolly pine r... 44 0.013
gb|CF402040.1|CF402040 RTWW1_16_F12.g1_A015 Well-watered lo... 44 0.013
gb|CF402460.1|CF402460 RTWW1_17_A06.g1_A015 Well-watered lo... 44 0.013
gb|CF402767.1|CF402767 RTWW1_22_E05.g1_A015 Well-watered lo... 44 0.013
gb|CF402938.1|CF402938 RTWW1_23_F01.g1_A015 Well-watered lo... 44 0.013
gb|CF403089.1|CF403089 RTWW1_24_F04.g1_A015 Well-watered lo... 44 0.013
gb|CF470435.1|CF470435 RTDS1_17_F06.g1_A015 Drought-stresse... 44 0.013
gb|CF475874.1|CF475874 RTWW2_15_B12.g1_A021 Well-watered lo... 44 0.013
gb|CF478836.1|CF478836 RTWW3_15_F06.g1_A022 Well-watered lo... 44 0.013
gb|CF479061.1|CF479061 RTWW3_21_H03.g1_A022 Well-watered lo... 44 0.013
gb|CF667757.1|CF667757 RTCNT1_32_H01.b1_A029 Root control P... 44 0.013
gb|BX681393.1|BX681393 BX681393 RS Pinus pinaster cDNA clon... 44 0.013
gb|CR394449.1|CR394449 CR394449 RN Pinus pinaster cDNA clon... 44 0.013
gb|CO159641.1|CO159641 FLD1_14_G12.g1_A029 Root flooded Pin... 44 0.013
gb|CO161433.1|CO161433 FLD1_28_F07.g1_A029 Root flooded Pin... 44 0.013
gb|CO364892.1|CO364892 RTK1_22_A03.g1_A029 Roots minus pota... 44 0.013
gb|DR019550.1|DR019550 STRS1_30_G04.g1_A034 Shoot tip pitch... 44 0.013
gb|DR020775.1|DR020775 STRS1_39_E10.b1_A034 Shoot tip pitch... 44 0.013
gb|DR022365.1|DR022365 STRS1_50_C09.g1_A034 Shoot tip pitch... 44 0.013
gb|DR025249.1|DR025249 STRS1_70_B07.g1_A034 Shoot tip pitch... 44 0.013
gb|DR052223.1|DR052223 RTCA1_3_E07.b1_A029 Roots minus calc... 44 0.013
gb|DR054873.1|DR054873 RTCA1_20_C08.b1_A029 Roots minus cal... 44 0.013
gb|DR060771.1|DR060771 RTNIT1_29_H11.g1_A029 Roots minus ni... 44 0.013
gb|DR069584.1|DR069584 RTDK1_8_D05.b1_A029 Roots, dark Pinu... 44 0.013
gb|DR071732.1|DR071732 RTDK1_21_F07.g1_A029 Roots, dark Pin... 44 0.013
gb|DR071993.1|DR071993 RTDK1_23_H07.b1_A029 Roots, dark Pin... 44 0.013
gb|DR072085.1|DR072085 RTDK1_24_B05.b1_A029 Roots, dark Pin... 44 0.013
gb|DR089676.1|DR089676 RTAL1_10_D10.b1_A029 Roots plus adde... 44 0.013
gb|DR089697.1|DR089697 RTAL1_10_F08.b1_A029 Roots plus adde... 44 0.013
gb|DR090620.1|DR090620 RTAL1_16_G09.b1_A029 Roots plus adde... 44 0.013
gb|DR091303.1|DR091303 RTAL1_20_E06.g1_A029 Roots plus adde... 44 0.013
gb|DR093384.1|DR093384 STRR1_7_H12.g1_A033 Stem Response Re... 44 0.013
gb|DR099196.1|DR099196 STRR1_53_F12.g1_A033 Stem Response R... 44 0.013
gb|DR161127.1|DR161127 RTFE1_10_B04.b1_A029 Roots minus iro... 44 0.013
gb|DR166827.1|DR166827 RTPHOS1_14_F03.g1_A029 Roots minus p... 44 0.013
gb|DR388706.1|DR388706 RTHG1_30_B04.b1_A029 Roots plus adde... 44 0.013
gb|DR686286.1|DR686286 EST1076364 Normalized pine embryo li... 44 0.013
gb|DT633320.1|DT633320 EST1148251 Normalized pine embryo li... 44 0.013
gb|AF291667.1|AF291667 Pinus sylvestris class III peroxidas... 44 0.013
dbj|BD224457.1| Materials and methods for the modification ... 44 0.013
dbj|BD224458.1| Materials and methods for the modification ... 44 0.013
gb|DR168517.1|DR168517 RTPHOS1_26_B03.b1_A029 Roots minus p... 42 0.051
gb|AA556933.1|AA556933 775 Loblolly pine C Pinus taeda cDNA... 40 0.20
gb|AW290581.1|AW290581 NXNV031G03F Nsf Xylem Normal wood Ve... 40 0.20
gb|AW981992.1|AW981992 PC22E09 Pine TriplEx pollen cone lib... 40 0.20
gb|BQ701419.1|BQ701419 NXSI_063_G08_F NXSI (Nsf Xylem Side ... 40 0.20
gb|BQ703097.1|BQ703097 NXSI_136_D10_F NXSI (Nsf Xylem Side ... 40 0.20
gb|CD027248.1|CD027248 NXNV031G03 Nsf Xylem Normal wood Ver... 40 0.20
gb|CF385386.1|CF385386 RTDR1_3_E05.g1_A015 Loblolly pine ro... 40 0.20
gb|CF385526.1|CF385526 RTDR1_4_H07.g1_A015 Loblolly pine ro... 40 0.20
gb|CF385702.1|CF385702 RTDR1_5_C11.g1_A015 Loblolly pine ro... 40 0.20
gb|CF385922.1|CF385922 RTDR1_7_A02.b1_A015 Loblolly pine ro... 40 0.20
gb|CF386338.1|CF386338 RTDR1_13_E09.g1_A015 Loblolly pine r... 40 0.20
gb|CF387203.1|CF387203 RTDR1_11_E10.g1_A015 Loblolly pine r... 40 0.20
gb|CF401583.1|CF401583 RTWW1_13_A11.g1_A015 Well-watered lo... 40 0.20
gb|CF402030.1|CF402030 RTWW1_16_F01.g1_A015 Well-watered lo... 40 0.20
gb|CF402751.1|CF402751 RTWW1_22_C06.g1_A015 Well-watered lo... 40 0.20
gb|CF474883.1|CF474883 RTWW2_8_F04.g1_A021 Well-watered lob... 40 0.20
gb|CF666909.1|CF666909 RTCNT1_27_A03.b1_A029 Root control P... 40 0.20
gb|BX679072.1|BX679072 BX679072 RS Pinus pinaster cDNA clon... 40 0.20
gb|BX680771.1|BX680771 BX680771 RS Pinus pinaster cDNA clon... 40 0.20
gb|CO159581.1|CO159581 FLD1_14_B02.g1_A029 Root flooded Pin... 40 0.20
gb|CO160800.1|CO160800 FLD1_24_B07.g1_A029 Root flooded Pin... 40 0.20
gb|CO163162.1|CO163162 FLD1_39_H03.g1_A029 Root flooded Pin... 40 0.20
gb|CO167878.1|CO167878 FLD1_71_G07.g1_A029 Root flooded Pin... 40 0.20
gb|CO171802.1|CO171802 NDL1_24_E05.g1_A029 Needles control ... 40 0.20
gb|CO173926.1|CO173926 NDL1_40_A08.g1_A029 Needles control ... 40 0.20
gb|CO200398.1|CO200398 GEO2_7_E11.b1_A032 Root gravitropism... 40 0.20
gb|CO200480.1|CO200480 GEO2_7_E11.g1_A032 Root gravitropism... 40 0.20
gb|CO366046.1|CO366046 RTK1_20_G03.g1_A029 Roots minus pota... 40 0.20
gb|CO367295.1|CO367295 RTK1_33_A07.g1_A029 Roots minus pota... 40 0.20
gb|CX647293.1|CX647293 COLD1_15_C07.b1_A029 Root cold Pinus... 40 0.20
gb|CX650291.1|CX650291 COLD1_44_E09.g1_A029 Root cold Pinus... 40 0.20
gb|CX653010.1|CX653010 COLD1_62_G10.g1_A029 Root cold Pinus... 40 0.20
gb|DR015598.1|DR015598 STRS1_4_B03.g1_A034 Shoot tip pitch ... 40 0.20
gb|DR017112.1|DR017112 STRS1_14_D06.b1_A034 Shoot tip pitch... 40 0.20
gb|DR017780.1|DR017780 STRS1_18_A08.g1_A034 Shoot tip pitch... 40 0.20
gb|DR025482.1|DR025482 STRS1_71_H02.g1_A034 Shoot tip pitch... 40 0.20
gb|DR050713.1|DR050713 RTBOR1_25_F03.b1_A029 Roots plus add... 40 0.20
gb|DR053196.1|DR053196 RTCA1_9_C11.g1_A029 Roots minus calc... 40 0.20
gb|DR054185.1|DR054185 RTCA1_15_F05.g1_A029 Roots minus cal... 40 0.20
gb|DR058888.1|DR058888 RTNIT1_14_B05.g1_A029 Roots minus ni... 40 0.20
gb|DR081714.1|DR081714 RTFEPL1_31_E05.g1_A029 Roots plus ad... 40 0.20
gb|DR090761.1|DR090761 RTAL1_17_E07.b1_A029 Roots plus adde... 40 0.20
gb|DR092596.1|DR092596 STRR1_2_A03.g1_A033 Stem Response Re... 40 0.20
gb|DR092597.1|DR092597 STRR1_2_A04.g1_A033 Stem Response Re... 40 0.20
gb|DR096092.1|DR096092 STRR1_25_E03.g1_A033 Stem Response R... 40 0.20
gb|DR096972.1|DR096972 STRR1_31_D02.g1_A033 Stem Response R... 40 0.20
gb|DR098772.1|DR098772 STRR1_47_F07.g1_A033 Stem Response R... 40 0.20
gb|DR102535.1|DR102535 STRR1_81_G06.g1_A033 Stem Response R... 40 0.20
gb|DR117522.1|DR117522 RTMG1_7_B03.g1_A029 Roots minus magn... 40 0.20
gb|DR682260.1|DR682260 EST1072335 Normalized pine embryo li... 40 0.20
gb|DR683701.1|DR683701 EST1073777 Normalized pine embryo li... 40 0.20
gb|DR687396.1|DR687396 EST1077478 Normalized pine embryo li... 40 0.20
gb|DR688664.1|DR688664 EST1078749 Normalized pine embryo li... 40 0.20
gb|DR689651.1|DR689651 EST1079737 Normalized pine embryo li... 40 0.20
gb|DR690617.1|DR690617 EST1080703 Normalized pine embryo li... 40 0.20
gb|DR692763.1|DR692763 EST1082851 Normalized pine embryo li... 40 0.20
gb|DT630985.1|DT630985 EST1145916 Normalized pine embryo li... 40 0.20
gb|DT634886.1|DT634886 EST1149817 Normalized pine embryo li... 40 0.20
gb|DT635728.1|DT635728 EST1150659 Normalized pine embryo li... 40 0.20
gb|DT636241.1|DT636241 EST1151172 Normalized pine embryo li... 40 0.20
gb|DT637471.1|DT637471 EST1152402 Normalized pine embryo li... 40 0.20
dbj|BD224554.1| Materials and methods for the modification ... 40 0.20
dbj|BD224560.1| Materials and methods for the modification ... 40 0.20
dbj|BD224561.1| Materials and methods for the modification ... 40 0.20
dbj|BD224568.1| Materials and methods for the modification ... 40 0.20
>gb|CF385091.1|CF385091 RTDR1_1_H08.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_H08_A015 5', mRNA
sequence
Length = 750
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 176 tccgccttcacttccatgactgcttcgttcagggctgcga 215
>gb|CF386345.1|CF386345 RTDR1_13_H08.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_13_H08_A015 5', mRNA
sequence
Length = 803
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 220 tccgccttcacttccatgactgcttcgttcagggctgcga 259
>gb|CF387078.1|CF387078 RTDR1_10_H09.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_10_H09_A015 5', mRNA
sequence
Length = 718
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 170 tccgccttcacttccatgactgcttcgttcagggctgcga 209
>gb|CF387597.1|CF387597 RTDR1_20_H12.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_20_H12_A015 5', mRNA
sequence
Length = 540
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 195 tccgccttcacttccatgactgcttcgttcagggctgcga 234
>gb|CF387636.1|CF387636 RTDR1_19_C02.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_C02_A015 3', mRNA
sequence
Length = 592
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 387 tccgccttcacttccatgactgcttcgttcagggctgcga 348
>gb|CF391571.1|CF391571 RTDR3_9_C02.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_9_C02_A022 5', mRNA
sequence
Length = 735
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 225 tccgccttcacttccatgactgcttcgttcagggctgcga 264
>gb|CF400173.1|CF400173 RTWW1_3_F07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_F07_A015 5', mRNA sequence
Length = 765
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 219 tccgccttcacttccatgactgcttcgttcagggctgcga 258
>gb|CF401192.1|CF401192 RTWW1_10_H07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_H07_A015 5', mRNA sequence
Length = 799
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 87 tccgccttcacttccatgactgcttcgttcagggctgcga 126
>gb|CF476953.1|CF476953 RTWW3_4_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_4_G10_A022 5', mRNA sequence
Length = 673
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 198 tccgccttcacttccatgactgcttcgttcagggctgcga 237
>gb|DR021427.1|DR021427 STRS1_44_C09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_C09_A034 5', mRNA sequence
Length = 494
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 204 tccgccttcacttccatgactgcttcgttcagggctgcga 243
>gb|DR088958.1|DR088958 RTAL1_5_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_E09_A029 5', mRNA sequence
Length = 860
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 173 tccgccttcacttccatgactgcttcgttcagggctgcga 212
>gb|DR099898.1|DR099898 STRR1_59_E08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_59_E08_A033 5', mRNA sequence
Length = 263
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 177 tccgccttcacttccatgactgcttcgttcagggctgcga 216
>gb|DR102256.1|DR102256 STRR1_79_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_79_E02_A033 5', mRNA sequence
Length = 514
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 190 tccgccttcacttccatgactgcttcgttcagggctgcga 229
>gb|DR742871.1|DR742871 RTCU1_7_C01.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_7_C01_A029 5', mRNA sequence
Length = 717
Score = 56.0 bits (28), Expect = 3e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 209 tccgccttcacttccatgactgcttcgttcagggctgcga 248
>gb|CR393302.1|CR393302 CR393302 RN Pinus pinaster cDNA clone RN58B03, mRNA sequence
Length = 499
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 182 cgcctgcacttccacgactgcttcgtccagggctgcgacgcctcgcttctgctggac 238
||||| || ||||||||||||||||| |||||||| |||| ||| ||||| |||||
Sbjct: 279 cgcctccatttccacgactgcttcgttcagggctgtgacggatcggttctgttggac 335
>gb|CZ895070.1|CZ895070 204_1_12063805_3_37678_081 Pine methylation filtered library
(LibID: 204) Pinus taeda genomic, DNA sequence
Length = 716
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 180 tccgcctgcacttccacgactgcttcgt 207
||||||| ||||||||||||||||||||
Sbjct: 493 tccgcctccacttccacgactgcttcgt 466
>gb|AL750501.1|AL750501 AL750501 RN Pinus pinaster cDNA clone RN03C02 similar to
PEROXIDASE, mRNA sequence
Length = 475
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 277 cacttccacgactgctttgtccagggatgcga 308
>gb|CF386681.1|CF386681 RTDR1_16_G03.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_16_G03_A015 3', mRNA
sequence
Length = 578
Score = 48.1 bits (24), Expect = 8e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 180 tccgcctgcacttccacgactgcttcgtccagggctgcga 219
||||||| ||||| ||||||||||||||| | ||||||||
Sbjct: 345 tccgccttcactttcacgactgcttcgtcaatggctgcga 306
>gb|CF665191.1|CF665191 RTCNT1_14_A12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_14_A12_A029 5', mRNA sequence
Length = 678
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 258 cacttccacgactgctttgtccagggatgcga 289
>gb|CR393261.1|CR393261 CR393261 RN Pinus pinaster cDNA clone RN54F02, mRNA sequence
Length = 482
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 264 cacttccacgactgctttgtccagggatgcga 295
>gb|CO159824.1|CO159824 FLD1_16_E07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_16_E07_A029 3', mRNA sequence
Length = 636
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 375 cacttccacgactgctttgtccagggatgcga 344
>gb|CO165441.1|CO165441 FLD1_54_C07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_C07_A029 5', mRNA sequence
Length = 868
Score = 48.1 bits (24), Expect = 8e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 191 ttccacgactgcttcgtccagggctgcgacgcctcgcttctgctggac 238
||||||||||||||||| |||||||| |||| ||| ||||| |||||
Sbjct: 135 ttccacgactgcttcgttcagggctgtgacggatcggttctgttggac 182
>gb|DR016861.1|DR016861 STRS1_12_D06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_D06_A034 5', mRNA sequence
Length = 895
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 261 cacttccacgactgctttgtccagggatgcga 292
>gb|DR019353.1|DR019353 STRS1_29_B01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_B01_A034 5', mRNA sequence
Length = 719
Score = 48.1 bits (24), Expect = 8e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 191 ttccacgactgcttcgtccagggctgcgacgcctcgcttctgctggac 238
||||||||||||||||| |||||||| |||| ||| ||||| |||||
Sbjct: 122 ttccacgactgcttcgttcagggctgtgacggatcggttctgttggac 169
>gb|DR019654.1|DR019654 STRS1_31_B07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_B07_A034 5', mRNA sequence
Length = 727
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 164 cacttccacgactgctttgtccagggatgcga 195
>gb|DR021011.1|DR021011 STRS1_40_F08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_F08_A034 5', mRNA sequence
Length = 629
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 20 cacttccacgactgctttgtccagggatgcga 51
>gb|DR050073.1|DR050073 RTBOR1_21_D02.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_D02_A029 3', mRNA sequence
Length = 822
Score = 48.1 bits (24), Expect = 8e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 191 ttccacgactgcttcgtccagggctgcgacgcctcgcttctgctggac 238
||||||||||||||||| |||||||| |||| ||| ||||| |||||
Sbjct: 547 ttccacgactgcttcgttcagggctgtgacggatcggttctgttggac 500
>gb|DR092479.1|DR092479 STRR1_1_D06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_D06_A033 5', mRNA sequence
Length = 893
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 270 cacttccacgactgctttgtccagggatgcga 301
>gb|DR095060.1|DR095060 STRR1_18_C01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_C01_A033 5', mRNA sequence
Length = 876
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 25 cacttccacgactgctttgtccagggatgcga 56
>gb|DR098171.1|DR098171 STRR1_39_C08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_C08_A033 5', mRNA sequence
Length = 724
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 250 cacttccacgactgctttgtccagggatgcga 281
>gb|DR099813.1|DR099813 STRR1_58_F12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_F12_A033 5', mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 18 cacttccacgactgctttgtccagggatgcga 49
>gb|DR102098.1|DR102098 STRR1_78_A01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_78_A01_A033 5', mRNA sequence
Length = 491
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 57 cacttccacgactgctttgtccagggatgcga 88
>gb|DR163369.1|DR163369 RTFE1_42_B11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_B11_A029 5', mRNA sequence
Length = 871
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgt 207
||||||||||||| ||||||||||||||
Sbjct: 20 tccgcctgcactttcacgactgcttcgt 47
>gb|DR166815.1|DR166815 RTPHOS1_14_E01.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_14_E01_A029 5', mRNA sequence
Length = 824
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 234 cacttccacgactgctttgtccagggatgcga 265
>gb|DR388727.1|DR388727 RTHG1_30_D05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_30_D05_A029 3', mRNA sequence
Length = 757
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 472 cacttccacgactgctttgtccagggatgcga 441
>gb|DR743557.1|DR743557 RTCU1_16_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_16_E06_A029 5', mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgt 207
||||||| ||||||||||||||||||||
Sbjct: 222 tccgccttcacttccacgactgcttcgt 249
>gb|DR744454.1|DR744454 RTCU1_22_C07.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_22_C07_A029 5', mRNA sequence
Length = 746
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 272 cacttccacgactgctttgtccagggatgcga 303
>dbj|BD224562.1| Materials and methods for the modification of plant lignin content
Length = 1171
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 180 tccgcctgcacttccacgactgcttcgt 207
||||||||||||| ||||||||||||||
Sbjct: 233 tccgcctgcactttcacgactgcttcgt 260
>dbj|BD224564.1| Materials and methods for the modification of plant lignin content
Length = 1522
Score = 48.1 bits (24), Expect = 8e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcga 219
||||||||||||||||| |||||||| |||||
Sbjct: 296 cacttccacgactgctttgtccagggatgcga 327
>gb|CF666571.1|CF666571 RTCNT1_24_G05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_24_G05_A029 3', mRNA sequence
Length = 814
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 593 tccatgatcaacatggggaacat 615
>gb|CX713784.1|CX713784 RTPQ1_13_C10.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_C10_A032 3', mRNA sequence
Length = 766
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 548 tccatgatcaacatggggaacat 570
>gb|DR056875.1|DR056875 RTNIT1_1_D03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_D03_A029 3', mRNA sequence
Length = 730
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 398 tccatgatcaacatggggaacat 420
>gb|DR060481.1|DR060481 RTNIT1_28_C11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_C11_A029 3', mRNA sequence
Length = 806
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 595 tccatgatcaacatggggaacat 617
>gb|DR097542.1|DR097542 STRR1_35_H07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_35_H07_A033 3', mRNA sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 409 tccatgatcaacatggggaacat 431
>gb|DR097614.1|DR097614 STRR1_35_H07.g4_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_35_H07_A033 5', mRNA sequence
Length = 769
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 737 tccatgatcaacatggggaacat 759
>gb|DR098747.1|DR098747 STRR1_47_D05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_47_D05_A033 5', mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 501 tccatgatcaacatggggaacat 523
>gb|DR098899.1|DR098899 STRR1_48_D05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_48_D05_A033 5', mRNA sequence
Length = 710
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 512 tccatgatcaacatggggaacat 534
>gb|DR100064.1|DR100064 STRR1_61_G12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_G12_A033 3', mRNA sequence
Length = 814
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 905 tccatgatcaacatggggaacat 927
|||||||||||||||||||||||
Sbjct: 591 tccatgatcaacatggggaacat 613
>gb|BG040407.1|BG040407 NXSI_107_H09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_107_H09 5' similar to Arabidopsis thaliana
sequence At1g71695 peroxidase ATP4a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.013
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctgcgacg 221
|||||||||||||| || |||||||| |||||||
Sbjct: 101 cacttccacgactgttttgtccagggatgcgacg 134
>gb|CF384952.1|CF384952 RTDR1_1_B07.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_B07_A015 3', mRNA
sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.013
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 188 cacttccacgactgcttcgtccagggctgcgacg 221
|||||||||||||| || |||||||| |||||||
Sbjct: 460 cacttccacgactgttttgtccagggatgcgacg 427
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,024
Number of Sequences: 355925
Number of extensions: 102024
Number of successful extensions: 31673
Number of sequences better than 0.5: 160
Number of HSP's better than 0.5 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31377
Number of HSP's gapped (non-prelim): 296
length of query: 1190
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1171
effective length of database: 210,514,662
effective search space: 246512669202
effective search space used: 246512669202
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)