BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763110.2.1
(541 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL750799.1|AL750799 AL750799 RN Pinus pinaster cDNA clon... 42 0.023
gb|BX677300.1|BX677300 BX677300 RN Pinus pinaster cDNA clon... 42 0.023
gb|DR023811.1|DR023811 STRS1_60_E08.b1_A034 Shoot tip pitch... 40 0.091
gb|DR079822.1|DR079822 RTFEPL1_18_A08.b1_A029 Roots plus ad... 40 0.091
gb|DR097513.1|DR097513 STRR1_35_D05.b1_A033 Stem Response R... 40 0.091
gb|DR097578.1|DR097578 STRR1_35_D05.g4_A033 Stem Response R... 40 0.091
>gb|AL750799.1|AL750799 AL750799 RN Pinus pinaster cDNA clone RN07E01 similar to
FERULATE-5-HYDROXYLASE, mRNA sequence
Length = 510
Score = 42.1 bits (21), Expect = 0.023
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 108 ttttcgtgaacgtttgggcaatgggaagg 136
||||||||||| |||||||||| ||||||
Sbjct: 328 ttttcgtgaacatttgggcaatcggaagg 356
>gb|BX677300.1|BX677300 BX677300 RN Pinus pinaster cDNA clone RN20B10, mRNA sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.023
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 108 ttttcgtgaacgtttgggcaatgggaagg 136
||||||||||| |||||||||| ||||||
Sbjct: 328 ttttcgtgaacatttgggcaatcggaagg 356
>gb|DR023811.1|DR023811 STRS1_60_E08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_E08_A034 3', mRNA sequence
Length = 752
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 122 tgggcaatgggaagggatcc 141
||||||||||||||||||||
Sbjct: 149 tgggcaatgggaagggatcc 168
>gb|DR079822.1|DR079822 RTFEPL1_18_A08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_A08_A029 3', mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 122 tgggcaatgggaagggatcc 141
||||||||||||||||||||
Sbjct: 172 tgggcaatgggaagggatcc 153
>gb|DR097513.1|DR097513 STRR1_35_D05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_35_D05_A033 3', mRNA sequence
Length = 873
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 122 tgggcaatgggaagggatcc 141
||||||||||||||||||||
Sbjct: 420 tgggcaatgggaagggatcc 401
>gb|DR097578.1|DR097578 STRR1_35_D05.g4_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_35_D05_A033 5', mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 122 tgggcaatgggaagggatcc 141
||||||||||||||||||||
Sbjct: 444 tgggcaatgggaagggatcc 425
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,051
Number of Sequences: 355925
Number of extensions: 58051
Number of successful extensions: 15203
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15197
Number of HSP's gapped (non-prelim): 6
length of query: 541
length of database: 217,277,237
effective HSP length: 19
effective length of query: 522
effective length of database: 210,514,662
effective search space: 109888653564
effective search space used: 109888653564
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)