BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750995.2.1
(729 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR686259.1|DR686259 EST1076337 Normalized pine embryo li... 119 2e-025
gb|DT633202.1|DT633202 EST1148133 Normalized pine embryo li... 119 2e-025
gb|BX255050.1|BX255050 BX255050 Pinus pinaster differenciat... 111 4e-023
gb|DR682507.1|DR682507 EST1072582 Normalized pine embryo li... 105 3e-021
gb|DT631127.1|DT631127 EST1146058 Normalized pine embryo li... 105 3e-021
gb|BF221092.1|BF221092 NXCI_163_C10_F NXCI (Nsf Xylem Compr... 88 6e-016
gb|AW784126.1|AW784126 NXNV_103_D08_F Nsf Xylem Normal wood... 78 6e-013
gb|BG832837.1|BG832837 NXPV_081_C11_F NXPV (Nsf Xylem Plani... 78 6e-013
gb|BQ696241.1|BQ696241 NXPV_037_A06_F NXPV (Nsf Xylem Plani... 78 6e-013
gb|CN785813.1|CN785813 EST784504 Sequencing ESTs from loblo... 78 6e-013
gb|CO414354.1|CO414354 EST844739 Sequencing ESTs from loblo... 78 6e-013
gb|CO414530.1|CO414530 EST844915 Sequencing ESTs from loblo... 78 6e-013
gb|CV145560.1|CV145560 EST856769 Sequencing ESTs from loblo... 78 6e-013
gb|CV145879.1|CV145879 EST857088 Sequencing ESTs from loblo... 78 6e-013
gb|CV146456.1|CV146456 EST857665 Sequencing ESTs from loblo... 78 6e-013
gb|DN448092.1|DN448092 EST943891 Sequencing ESTs from loblo... 78 6e-013
gb|DN454648.1|DN454648 EST950447 Sequencing ESTs from loblo... 78 6e-013
gb|DN455552.1|DN455552 EST951351 Sequencing ESTs from loblo... 78 6e-013
gb|DR013127.1|DR013127 HEAT1_17_E04.b1_A029 Root at 37 C fo... 78 6e-013
gb|CF391377.1|CF391377 RTDR3_1_F02.g1_A022 Loblolly pine ro... 76 2e-012
gb|BG040464.1|BG040464 NXSI_108_E06_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|AW010207.1|AW010207 ST03D02 Pine TriplEx shoot tip libra... 50 1e-004
gb|BX250886.1|BX250886 BX250886 Pinus pinaster differenciat... 50 1e-004
gb|BX255245.1|BX255245 BX255245 Pinus pinaster differenciat... 50 1e-004
gb|BE451961.1|BE451961 NXCI_006_G11_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BE451977.1|BE451977 NXCI_007_A01_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BE520097.1|BE520097 NXCI_016_G04_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BE607184.1|BE607184 NXCI_038_A08_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BF169605.1|BF169605 NXCI_125_B12_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BF221303.1|BF221303 NXCI_157_B06_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BF221328.1|BF221328 NXCI_157_D10_F NXCI (Nsf Xylem Compr... 50 1e-004
gb|BF609500.1|BF609500 NXSI_043_D01_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BG039542.1|BG039542 NXSI_100_B12_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BG040630.1|BG040630 NXSI_113_C12_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BG318777.1|BG318777 NXPV_016_G04_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BQ697930.1|BQ697930 NXPV_062_F04_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BQ698027.1|BQ698027 NXPV_063_F12_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|BQ702114.1|BQ702114 NXSI_125_D01_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|CD022863.1|CD022863 NXPV_087_A12_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|CF668609.1|CF668609 RTCNT1_37_C09.g1_A029 Root control P... 50 1e-004
gb|CX712437.1|CX712437 RTPQ1_2_B10.g2_A032 Roots treated wi... 50 1e-004
gb|DR180298.1|DR180298 RTMNUT1_27_E10.g1_A029 Roots minus m... 50 1e-004
gb|AW736991.1|AW736991 NXNV_082_G09_F Nsf Xylem Normal wood... 46 0.002
gb|BE496330.1|BE496330 NXCI_022_G10_F NXCI (Nsf Xylem Compr... 46 0.002
gb|BF169499.1|BF169499 NXCI_120_B12_F NXCI (Nsf Xylem Compr... 46 0.002
gb|BF609646.1|BF609646 NXSI_047_F05_F NXSI (Nsf Xylem Side ... 46 0.002
gb|CD016670.1|CD016670 NXCI_057_C07_F NXCI (Nsf Xylem Compr... 46 0.002
gb|BE123762.1|BE123762 NXNV_156_A02_F Nsf Xylem Normal wood... 40 0.12
gb|BG317474.1|BG317474 NXPV_002_C06_F NXPV (Nsf Xylem Plani... 40 0.12
gb|AA556357.1|AA556357 212 Loblolly pine C Pinus taeda cDNA... 38 0.49
>gb|DR686259.1|DR686259 EST1076337 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE11 3' end, mRNA sequence
Length = 585
Score = 119 bits (60), Expect = 2e-025
Identities = 355/454 (78%)
Strand = Plus / Plus
Query: 196 acaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctg 255
|||||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct: 114 acaagatggtgaagatctgctgcatcggagcagggtatgtgggtggccccaccatggctg 173
Query: 256 tcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgca 315
| || || || || ||||| | |||||| || || || ||||||||||| || || || |
Sbjct: 174 tgatagctctgaaatgccccgccattgaagtcgtagtagttgacatctctaatcctcgaa 233
Query: 316 ttgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtga 375
|||| || ||||||||||| || |||||||| || || ||||| ||||| ||||| |
Sbjct: 234 ttgatgcgtggaacagcgatcagcttccgatctatgaacctggccttgatgaagttgtca 293
Query: 376 agcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgagg 435
| ||||||| | |||||||| ||||| | ||||| |||||||| || ||||| |
Sbjct: 294 aagcctgcagggaaaaaaacctctttttcagttccgatgtagagaagcatgttgctgaag 353
Query: 436 ctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggca 495
| ||||| | ||||| || || ||||||||||| ||||| | || || || ||| |
Sbjct: 354 ccgacattgtgttcgtttcagtaaacacccccacgaagacaagaggcctcggccatggaa 413
Query: 496 aggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagt 555
| ||||| || || ||||||||||| ||||| ||| | ||||| |||||||| || || |
Sbjct: 414 aagctgcagatctgacctactgggaaagcgcggctagaatgatagccgatgtttctaaat 473
Query: 556 ctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgaga 615
| ||||| || || || ||||| || || || ||||| || || || ||||| ||||| |
Sbjct: 474 cggacaaaattgtcgttgagaaatcaacagttcctgttaaaacagcagaggcaattgaaa 533
Query: 616 agatcttgacccacnncagcaagggcatcaacta 649
|||| || |||||| ||||||||| || |||||
Sbjct: 534 agattttaacccacaacagcaagggaattaacta 567
>gb|DT633202.1|DT633202 EST1148133 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFS42 3' end, mRNA sequence
Length = 858
Score = 119 bits (60), Expect = 2e-025
Identities = 355/454 (78%)
Strand = Plus / Plus
Query: 196 acaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctg 255
|||||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct: 180 acaagatggtgaagatctgctgcatcggagcagggtatgtgggtggccccaccatggctg 239
Query: 256 tcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgca 315
| || || || || ||||| | |||||| || || || ||||||||||| || || || |
Sbjct: 240 tgatagctctgaaatgccccgccattgaagtcgtagtagttgacatctctaatcctcgaa 299
Query: 316 ttgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtga 375
|||| || ||||||||||| || |||||||| || || ||||| ||||| ||||| |
Sbjct: 300 ttgatgcgtggaacagcgatcagcttccgatctatgaacctggccttgatgaagttgtca 359
Query: 376 agcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgagg 435
| ||||||| | |||||||| ||||| | ||||| |||||||| || ||||| |
Sbjct: 360 aagcctgcagggaaaaaaacctctttttcagttccgatgtagagaagcatgttgctgaag 419
Query: 436 ctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggca 495
| ||||| | ||||| || || ||||||||||| ||||| | || || || ||| |
Sbjct: 420 ccgacattgtgttcgtttcagtaaacacccccacgaagacaagaggcctcggccatggaa 479
Query: 496 aggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagt 555
| ||||| || || ||||||||||| ||||| ||| | ||||| |||||||| || || |
Sbjct: 480 aagctgcagatctgacctactgggaaagcgcggctagaatgatagccgatgtttctaaat 539
Query: 556 ctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgaga 615
| ||||| || || || ||||| || || || ||||| || || || ||||| ||||| |
Sbjct: 540 cggacaaaattgtcgttgagaaatcaacagttcctgttaaaacagcagaggcaattgaaa 599
Query: 616 agatcttgacccacnncagcaagggcatcaacta 649
|||| || |||||| ||||||||| || |||||
Sbjct: 600 agattttaacccacaacagcaagggaattaacta 633
>gb|BX255050.1|BX255050 BX255050 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP109H04, mRNA sequence
Length = 569
Score = 111 bits (56), Expect = 4e-023
Identities = 224/280 (80%)
Strand = Plus / Plus
Query: 196 acaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctg 255
|||||||||||||| ||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct: 196 acaagatggtgaaggtctgctgcatcggagcagggtatgtgggtggccccaccatggctg 255
Query: 256 tcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgca 315
| || || || || ||||| | |||||| || || || ||||||||||| |||| || |
Sbjct: 256 tgatagctctgaaatgccccgccattgaagtcgtagtagttgacatctctgagcctcgga 315
Query: 316 ttgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtga 375
|||| || ||||||||||| || |||||||| || || ||||| ||||| ||||| |
Sbjct: 316 ttgacgcgtggaacagcgatcagcttccgatctatgaacctggccttgatgaagttgtca 375
Query: 376 agcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgagg 435
| |||||||| | |||||||| ||||| | |||||||||||||| || ||||| |
Sbjct: 376 aagcctgcaggggaaaaaacctctttttcagttccgatgttgagaagcatgttgctgaag 435
Query: 436 ctgacatcatcttcgtctcggtgaacacccccaccaagac 475
| ||||| | ||||| || || ||||||||||| |||||
Sbjct: 436 ccgacattgtgttcgtttcagtaaacacccccacgaagac 475
>gb|DR682507.1|DR682507 EST1072582 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAA32 3' end, mRNA sequence
Length = 714
Score = 105 bits (53), Expect = 3e-021
Identities = 355/455 (78%), Gaps = 1/455 (0%)
Strand = Plus / Plus
Query: 196 acaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctg 255
|||||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct: 114 acaagatggtgaagatctgctgcatcggagcagggtatgtgggtggccccaccatggctg 173
Query: 256 tcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgca 315
| || || || || ||||| | |||||| || || || ||||||| ||| || || || |
Sbjct: 174 tgatagctctgaaatgccccgccattgaagtcgtagtagttgacacctctaatcctcgaa 233
Query: 316 ttgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtga 375
|||| || ||||||||||| || |||||||| || || ||||| ||||| ||||| |
Sbjct: 234 ttgatgcgtggaacagcgatcagcttccgatctatgaacctggccttgatgaagttgtca 293
Query: 376 agcagtgcagggg-caggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
| |||||||| | |||||||| ||||| | ||||| |||||||| || |||||
Sbjct: 294 aagcctgcaggggaaaaaaacctctttttcagttccgatgtagagaagcatgttgctgaa 353
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||| | ||||| || || ||||||||||| ||||| | || || || |||
Sbjct: 354 gccgacattgtgttcgtttcagtaaacacccccacgaagacaagaggcctcggccatgga 413
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
|| ||||| || || ||||||||||| ||||| ||| | ||||| |||||||| || ||
Sbjct: 414 aaagctgcagatctgacctactgggaaagcgcggctagaatgatagccgatgtttctaaa 473
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||| || || || ||||| || || || ||||| || || || ||||| |||||
Sbjct: 474 tcggacaaaattgtcgttgagaaatcaacagttcctgttaaaacagcagaggcaattgaa 533
Query: 615 aagatcttgacccacnncagcaagggcatcaacta 649
||||| || |||||| ||||||||| || |||||
Sbjct: 534 aagattttaacccacaacagcaagggaattaacta 568
>gb|DT631127.1|DT631127 EST1146058 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF526 3' end, mRNA sequence
Length = 875
Score = 105 bits (53), Expect = 3e-021
Identities = 355/455 (78%), Gaps = 1/455 (0%)
Strand = Plus / Plus
Query: 196 acaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctg 255
|||||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct: 182 acaagatggtgaagatctgctgcatcggagcagggtatgtgggtggccccaccatggctg 241
Query: 256 tcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgca 315
| || || || || ||||| | |||||| || || || ||||||| ||| || || || |
Sbjct: 242 tgatagctctgaaatgccccgccattgaagtcgtagtagttgacacctctaatcctcgaa 301
Query: 316 ttgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtga 375
|||| || ||||||||||| || |||||||| || || ||||| ||||| ||||| |
Sbjct: 302 ttgatgcgtggaacagcgatcagcttccgatctatgaacctggccttgatgaagttgtca 361
Query: 376 agcagtgcagggg-caggaacctcttcttcagcactgatgttgagaagcacgtcgctgag 434
| |||||||| | |||||||| ||||| | ||||| |||||||| || |||||
Sbjct: 362 aagcctgcaggggaaaaaaacctctttttcagttccgatgtagagaagcatgttgctgaa 421
Query: 435 gctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggc 494
|| ||||| | ||||| || || ||||||||||| ||||| | || || || |||
Sbjct: 422 gccgacattgtgttcgtttcagtaaacacccccacgaagacaagaggcctcggccatgga 481
Query: 495 aaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaag 554
|| ||||| || || ||||||||||| ||||| ||| | ||||| |||||||| || ||
Sbjct: 482 aaagctgcagatctgacctactgggaaagcgcggctagaatgatagccgatgtttctaaa 541
Query: 555 tctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag 614
|| ||||| || || || ||||| || || || ||||| || || || ||||| |||||
Sbjct: 542 tcggacaaaattgtcgttgagaaatcaacagttcctgttaaaacagcagaggcaattgaa 601
Query: 615 aagatcttgacccacnncagcaagggcatcaacta 649
||||| || |||||| ||||||||| || |||||
Sbjct: 602 aagattttaacccacaacagcaagggaattaacta 636
>gb|BF221092.1|BF221092 NXCI_163_C10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_163_C10 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 397
Score = 87.7 bits (44), Expect = 6e-016
Identities = 221/280 (78%)
Strand = Plus / Plus
Query: 196 acaagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctg 255
||||||||||||||||||| |||||||| || || ||||| |||||||| ||||||||||
Sbjct: 55 acaagatggtgaagatctgttgcatcggagcagggtatgtgggtggccccaccatggctg 114
Query: 256 tcattgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgca 315
| || || || || ||||| | |||||| || || || |||||||| || || || || |
Sbjct: 115 tgatagctctgaaatgccccgccattgaagtcgtagtagttgacatatctaatcctcgaa 174
Query: 316 ttgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtga 375
|||| || ||||||||||| || |||||||| || || ||||| ||||| ||||| |
Sbjct: 175 ttgatgcgtggaacagcgatcagcttccgatctatgaacctggccttgatgaagttgtca 234
Query: 376 agcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgagg 435
| |||||||| | |||||||| ||||| | |||| |||||||| || ||||| |
Sbjct: 235 aagcctgcaggggaaaaaacctctttttcagttccaatgtagagaagcatgttgctgaag 294
Query: 436 ctgacatcatcttcgtctcggtgaacacccccaccaagac 475
| ||||| | ||||| || || ||||||||||| |||||
Sbjct: 295 ccgacattgtgttcgtttcagtaaacacccccacgaagac 334
>gb|AW784126.1|AW784126 NXNV_103_D08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_103_D08 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 263
Score = 77.8 bits (39), Expect = 6e-013
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 12 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 71
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 72 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 131
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 132 gttgtggagaa 142
>gb|BG832837.1|BG832837 NXPV_081_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_081_C11 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 418
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 67 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 126
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 127 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 186
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 187 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 246
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 247 gttgtggagaa 257
>gb|BQ696241.1|BQ696241 NXPV_037_A06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_A06 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 475
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 67 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 126
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 127 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 186
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 187 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 246
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 247 gttgtggagaa 257
>gb|CN785813.1|CN785813 EST784504 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB379 5' end, mRNA sequence
Length = 748
Score = 77.8 bits (39), Expect = 6e-013
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 18 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 77
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 78 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 137
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 138 gttgtggagaa 148
>gb|CO414354.1|CO414354 EST844739 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMN23 5' end, mRNA sequence
Length = 769
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 239 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 298
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 299 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 358
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 359 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 418
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 419 gttgtggagaa 429
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 53 atggtgaagatctgctgcatcgg 75
>gb|CO414530.1|CO414530 EST844915 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMP65 5' end, mRNA sequence
Length = 769
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 239 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 298
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 299 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 358
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 359 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 418
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 419 gttgtggagaa 429
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 53 atggtgaagatctgctgcatcgg 75
>gb|CV145560.1|CV145560 EST856769 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDK03 5' end, mRNA sequence
Length = 837
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 238 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 297
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 298 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 357
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 358 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 417
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 418 gttgtggagaa 428
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 52 atggtgaagatctgctgcatcgg 74
>gb|CV145879.1|CV145879 EST857088 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDQ19 5' end, mRNA sequence
Length = 915
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 120 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 179
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 180 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 239
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 240 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 299
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 300 gttgtggagaa 310
>gb|CV146456.1|CV146456 EST857665 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDW57 5' end, mRNA sequence
Length = 857
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 263 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 322
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 323 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 382
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 383 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 442
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 443 gttgtggagaa 453
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 77 atggtgaagatctgctgcatcgg 99
>gb|DN448092.1|DN448092 EST943891 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIC087 5' end, mRNA sequence
Length = 939
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 239 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 298
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 299 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 358
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 359 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 418
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 419 gttgtggagaa 429
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 53 atggtgaagatctgctgcatcgg 75
>gb|DN454648.1|DN454648 EST950447 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG582 5' end, mRNA sequence
Length = 896
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 241 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 300
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 301 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 360
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 361 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 420
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 421 gttgtggagaa 431
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 55 atggtgaagatctgctgcatcgg 77
>gb|DN455552.1|DN455552 EST951351 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGF47 5' end, mRNA sequence
Length = 939
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 236 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 295
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 296 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 355
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 356 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 415
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 416 gttgtggagaa 426
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 50 atggtgaagatctgctgcatcgg 72
>gb|DR013127.1|DR013127 HEAT1_17_E04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_E04_A029 3', mRNA sequence
Length = 859
Score = 77.8 bits (39), Expect = 6e-013
Identities = 153/191 (80%)
Strand = Plus / Minus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 817 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 758
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 757 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 698
Query: 507 ctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatc 566
|| ||||||||||| || || || |||||||| || || || ||||| ||||||||
Sbjct: 697 ctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaagtcggacaagatt 638
Query: 567 gttgtcgagaa 577
||||| |||||
Sbjct: 637 gttgtggagaa 627
>gb|CF391377.1|CF391377 RTDR3_1_F02.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_F02_A022 5', mRNA
sequence
Length = 581
Score = 75.8 bits (38), Expect = 2e-012
Identities = 110/134 (82%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 407 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 466
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || |||||||| ||||||
Sbjct: 467 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggcaaggcagccgac 526
Query: 507 ctcacctactggga 520
|| |||||||||||
Sbjct: 527 ctgacctactggga 540
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 221 atggtgaagatctgctgcatcgg 243
>gb|BG040464.1|BG040464 NXSI_108_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_E06 5' similar to Arabidopsis thaliana
sequence At1g26570 UDP-glucose dehydrogenase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 548
Score = 52.0 bits (26), Expect = 3e-005
Identities = 106/134 (79%)
Strand = Plus / Plus
Query: 387 ggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatc 446
|||| ||| |||||||||||| | || || ||||| ||||| || || || || || |
Sbjct: 275 ggcaagaatctcttcttcagctccgacgtcgagaaacacgttgcggaagcggagatagtg 334
Query: 447 ttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggctgccgac 506
|||||||| || ||||| || ||||||||||||||||| || || || || ||||||
Sbjct: 335 ttcgtctccgtcaacacgcctaccaagacccgtgggctcggcgccggnnagnnagccgac 394
Query: 507 ctcacctactggga 520
|| |||||||||||
Sbjct: 395 ctgacctactggga 408
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 89 atggtgaagatctgctgcatcgg 111
>gb|AW010207.1|AW010207 ST03D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST03D02, mRNA sequence
Length = 656
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 142 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 201
Query: 258 attgc 262
|||||
Sbjct: 202 attgc 206
>gb|BX250886.1|BX250886 BX250886 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042E05 similar to UDP GLUCOSE 6
DEHYDROGENASE, mRNA sequence
Length = 676
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 131 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 190
Query: 258 attgc 262
|||||
Sbjct: 191 attgc 195
>gb|BX255245.1|BX255245 BX255245 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP113D11 similar to UDP GLUCOSE 6
DEHYDROGENASE, mRNA sequence
Length = 389
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 163 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 222
Query: 258 attgc 262
|||||
Sbjct: 223 attgc 227
>gb|BE451961.1|BE451961 NXCI_006_G11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_006_G11 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 483
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 108 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 167
Query: 258 attgc 262
|||||
Sbjct: 168 attgc 172
>gb|BE451977.1|BE451977 NXCI_007_A01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_007_A01 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 244
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 59 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 118
Query: 258 attgc 262
|||||
Sbjct: 119 attgc 123
>gb|BE520097.1|BE520097 NXCI_016_G04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_016_G04 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 272
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 114 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 173
Query: 258 attgc 262
|||||
Sbjct: 174 attgc 178
>gb|BE607184.1|BE607184 NXCI_038_A08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_038_A08 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 327
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 121 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 180
Query: 258 attgc 262
|||||
Sbjct: 181 attgc 185
>gb|BF169605.1|BF169605 NXCI_125_B12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_125_B12 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 526
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 59 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 118
Query: 258 attgc 262
|||||
Sbjct: 119 attgc 123
>gb|BF221303.1|BF221303 NXCI_157_B06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_157_B06 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 292
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 121 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 180
Query: 258 attgc 262
|||||
Sbjct: 181 attgc 185
>gb|BF221328.1|BF221328 NXCI_157_D10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_157_D10 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 300
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 121 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 180
Query: 258 attgc 262
|||||
Sbjct: 181 attgc 185
>gb|BF609500.1|BF609500 NXSI_043_D01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_043_D01 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 308
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 123 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 182
Query: 258 attgc 262
|||||
Sbjct: 183 attgc 187
>gb|BG039542.1|BG039542 NXSI_100_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_100_B12 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 442
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 114 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 173
Query: 258 attgc 262
|||||
Sbjct: 174 attgc 178
>gb|BG040630.1|BG040630 NXSI_113_C12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_113_C12 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 393
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 114 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 173
Query: 258 attgc 262
|||||
Sbjct: 174 attgc 178
>gb|BG318777.1|BG318777 NXPV_016_G04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_016_G04 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 490
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 116 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 175
Query: 258 attgc 262
|||||
Sbjct: 176 attgc 180
>gb|BQ697930.1|BQ697930 NXPV_062_F04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_F04 5' similar to Arabidopsis
thaliana sequence At5g39320 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 212
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 127 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 186
Query: 258 attgc 262
|||||
Sbjct: 187 attgc 191
>gb|BQ698027.1|BQ698027 NXPV_063_F12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_063_F12 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 459
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 127 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 186
Query: 258 attgc 262
|||||
Sbjct: 187 attgc 191
>gb|BQ702114.1|BQ702114 NXSI_125_D01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_125_D01 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 520
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 112 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 171
Query: 258 attgc 262
|||||
Sbjct: 172 attgc 176
>gb|CD022863.1|CD022863 NXPV_087_A12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_087_A12 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 139
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 3 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 62
Query: 258 attgc 262
|||||
Sbjct: 63 attgc 67
>gb|CF668609.1|CF668609 RTCNT1_37_C09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_C09_A029 5', mRNA sequence
Length = 746
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 98 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 157
Query: 258 attgc 262
|||||
Sbjct: 158 attgc 162
>gb|CX712437.1|CX712437 RTPQ1_2_B10.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_B10_A032 5', mRNA sequence
Length = 859
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 103 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 162
Query: 258 attgc 262
|||||
Sbjct: 163 attgc 167
>gb|DR180298.1|DR180298 RTMNUT1_27_E10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_E10_A029 5', mRNA sequence
Length = 688
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| ||||| ||||| ||||| ||
Sbjct: 88 aagatggtgaagatctgctgtcttggagctggatatgttggtgggccaacaatggccatc 147
Query: 258 attgc 262
|||||
Sbjct: 148 attgc 152
>gb|AW736991.1|AW736991 NXNV_082_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_082_G09 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 214
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 49 atggtgaagatctgctgcatcgg 71
>gb|BE496330.1|BE496330 NXCI_022_G10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_022_G10 5' similar to Arabidopsis
thaliana sequence At1g26570 UDP-glucose dehydrogenase
like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 257
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 89 atggtgaagatctgctgcatcgg 111
>gb|BF169499.1|BF169499 NXCI_120_B12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_120_B12 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 354
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 61 atggtgaagatctgctgcatcgg 83
>gb|BF609646.1|BF609646 NXSI_047_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_047_F05 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 338
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcgg 223
|||||||||||||||||||||||
Sbjct: 89 atggtgaagatctgctgcatcgg 111
>gb|CD016670.1|CD016670 NXCI_057_C07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_057_C07 5' similar to Arabidopsis
thaliana sequence At5g39320 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 198
Score = 46.1 bits (23), Expect = 0.002
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||| | || ||||| ||||| |||| ||||| ||||| ||
Sbjct: 121 aagatggtgaagatctgctgtcttggagctggatatgttggtgnnccaacaatggccatc 180
Query: 258 attgc 262
|||||
Sbjct: 181 attgc 185
>gb|BE123762.1|BE123762 NXNV_156_A02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_156_A02 5' similar to Arabidopsis thaliana
sequence At1g26570 UDP-glucose dehydrogenase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.12
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 494 caaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaa 553
|||||| |||||||| ||||||||||| || || || |||||||| || || || ||
Sbjct: 1 caaggcagccgacctgacctactgggaatcggccgcccggatgatcgcggacgtgtcgaa 60
Query: 554 gtctgacaagatcgttgtcgagaa 577
||| |||||||| ||||| |||||
Sbjct: 61 gtcggacaagattgttgtggagaa 84
>gb|BG317474.1|BG317474 NXPV_002_C06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_C06 5' similar to Arabidopsis
thaliana sequence At1g26570 UDP-glucose dehydrogenase
like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 228
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctg 217
||||||||||||||||||||
Sbjct: 116 aagatggtgaagatctgctg 135
>gb|AA556357.1|AA556357 212 Loblolly pine C Pinus taeda cDNA clone 5c8c, mRNA sequence
Length = 359
Score = 38.2 bits (19), Expect = 0.49
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
|||||||| |||||||| | || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 115 atggtgaanatctgctgtcttggagctggatatgttggtgggccaacaatggccatcatt 174
Query: 261 gc 262
||
Sbjct: 175 gc 176
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,820
Number of Sequences: 355925
Number of extensions: 76820
Number of successful extensions: 25062
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24973
Number of HSP's gapped (non-prelim): 87
length of query: 729
length of database: 217,277,237
effective HSP length: 19
effective length of query: 710
effective length of database: 210,514,662
effective search space: 149465410020
effective search space used: 149465410020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)