BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL751028.1|AL751028 AL751028 RS Pinus pinaster cDNA clon... 98 7e-019
gb|BQ634030.1|BQ634030 NXRV063_H09_F NXRV (Nsf Xylem Root w... 90 2e-016
gb|DR684038.1|DR684038 EST1074115 Normalized pine embryo li... 90 2e-016
gb|DR695222.1|DR695222 EST1085315 Normalized pine embryo li... 90 2e-016
gb|DT631856.1|DT631856 EST1146787 Normalized pine embryo li... 90 2e-016
gb|CX651754.1|CX651754 COLD1_54_C07.g1_A029 Root cold Pinus... 86 3e-015
gb|BQ700242.1|BQ700242 NXRV103_B01_F NXRV (Nsf Xylem Root w... 84 1e-014
gb|DR745375.1|DR745375 RTCU1_28_H07.g1_A029 Roots plus adde... 84 1e-014
gb|AW226228.1|AW226228 ST79H03 Pine TriplEx shoot tip libra... 82 4e-014
gb|BE810207.1|BE810207 NXCI_061_D08_F NXCI (Nsf Xylem Compr... 82 4e-014
gb|BG039718.1|BG039718 NXSI_103_C07_F NXSI (Nsf Xylem Side ... 82 4e-014
gb|CF474563.1|CF474563 RTWW2_9_G09.g1_A021 Well-watered lob... 82 4e-014
gb|DR090800.1|DR090800 RTAL1_17_A07.g1_A029 Roots plus adde... 82 4e-014
gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iro... 82 4e-014
gb|BF778460.1|BF778460 NXSI_085_A08_F NXSI (Nsf Xylem Side ... 80 2e-013
gb|BQ634633.1|BQ634633 NXRV071_D02_F NXRV (Nsf Xylem Root w... 80 2e-013
gb|BQ696543.1|BQ696543 NXPV_042_E02_F NXPV (Nsf Xylem Plani... 80 2e-013
gb|BQ697346.1|BQ697346 NXPV_053_A10_F NXPV (Nsf Xylem Plani... 80 2e-013
gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2... 80 2e-013
gb|DR180886.1|DR180886 RTMNUT1_35_A12.g1_A029 Roots minus m... 80 2e-013
gb|BX253884.1|BX253884 BX253884 Pinus pinaster differenciat... 78 6e-013
gb|BG040772.1|BG040772 NXSI_114_H07_F NXSI (Nsf Xylem Side ... 78 6e-013
gb|BQ699768.1|BQ699768 NXRV128_F12_F NXRV (Nsf Xylem Root w... 78 6e-013
gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus adde... 78 6e-013
gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered lob... 76 3e-012
gb|CF400248.1|CF400248 RTWW1_4_C07.b1_A015 Well-watered lob... 74 1e-011
gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pin... 74 1e-011
gb|DR117585.1|DR117585 RTMG1_7_G09.g1_A029 Roots minus magn... 74 1e-011
gb|BM492945.1|BM492945 NXRV_032_E05_F NXRV (Nsf Xylem Root ... 72 4e-011
gb|BE582301.1|BE582301 NXCI_031_G04_F NXCI (Nsf Xylem Compr... 70 2e-010
gb|BX680185.1|BX680185 BX680185 RS Pinus pinaster cDNA clon... 70 2e-010
gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control P... 68 6e-010
gb|DR689988.1|DR689988 EST1080074 Normalized pine embryo li... 66 2e-009
gb|BF517621.1|BF517621 NXSI_028_A08_F NXSI (Nsf Xylem Side ... 64 1e-008
gb|CF399983.1|CF399983 RTWW1_2_H07.g1_A015 Well-watered lob... 64 1e-008
gb|CF478008.1|CF478008 RTWW3_17_E11.g1_A022 Well-watered lo... 64 1e-008
gb|CO200322.1|CO200322 GEO2_6_F04.g1_A032 Root gravitropism... 64 1e-008
gb|BX250216.1|BX250216 BX250216 Pinus pinaster differenciat... 62 4e-008
gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 ... 62 4e-008
gb|DR048046.1|DR048046 RTBOR1_6_F07.b2_A029 Roots plus adde... 62 4e-008
gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus mag... 62 4e-008
gb|CF401168.1|CF401168 RTWW1_10_B05.g1_A015 Well-watered lo... 60 1e-007
gb|CV033627.1|CV033627 RTNACL1_35_D11.g1_A029 Roots plus ad... 56 2e-006
gb|DR177509.1|DR177509 RTMNUT1_5_F01.g1_A029 Roots minus mi... 56 2e-006
gb|DR060099.1|DR060099 RTNIT1_25_E07.g1_A029 Roots minus ni... 54 9e-006
gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine ro... 52 4e-005
gb|CF390665.1|CF390665 RTDR2_20_H04.g1_A021 Loblolly pine r... 52 4e-005
gb|DR078591.1|DR078591 RTFEPL1_5_E02.g1_A029 Roots plus add... 50 1e-004
gb|AW226312.1|AW226312 ST80H09 Pine TriplEx shoot tip libra... 48 6e-004
gb|CF478056.1|CF478056 RTWW3_17_A02.g1_A022 Well-watered lo... 48 6e-004
gb|BX253444.1|BX253444 BX253444 Pinus pinaster differenciat... 46 0.002
gb|DR023359.1|DR023359 STRS1_57_C07.b1_A034 Shoot tip pitch... 46 0.002
gb|DR069148.1|DR069148 RTDK1_5_E09.b1_A029 Roots, dark Pinu... 46 0.002
gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered lo... 44 0.009
gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control P... 44 0.009
gb|BI077223.1|BI077223 NXPV_094_E01_F NXPV (Nsf Xylem Plani... 40 0.14
gb|BQ633777.1|BQ633777 NXRV060_F03_F NXRV (Nsf Xylem Root w... 40 0.14
gb|BQ697831.1|BQ697831 NXPV_061_D07_F NXPV (Nsf Xylem Plani... 40 0.14
gb|BQ698459.1|BQ698459 NXPV_070_B09_F NXPV (Nsf Xylem Plani... 40 0.14
gb|BX680745.1|BX680745 BX680745 RS Pinus pinaster cDNA clon... 40 0.14
gb|CO200002.1|CO200002 GEO2_4_G10.g1_A032 Root gravitropism... 40 0.14
gb|DR070187.1|DR070187 RTDK1_11_G05.g1_A029 Roots, dark Pin... 40 0.14
>gb|AL751028.1|AL751028 AL751028 RS Pinus pinaster cDNA clone RS03C05 similar to PECTATE
LYASE, mRNA sequence
Length = 621
Score = 97.6 bits (49), Expect = 7e-019
Identities = 106/125 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| |||||||||||||||||| |||||| || |||||||||
Sbjct: 160 gagcctctgtggattatcttccagcgggacatggtcatcatgctcaaagaagagctcatc 219
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcc 705
|||||||| | ||||||||| ||||| || |||| ||| || ||||| || ||||| ||
Sbjct: 220 atgaacagttacaagaccatagacggccgtggcgtcaatgtacacatagcaaatggaccc 279
Query: 706 tgcat 710
|||||
Sbjct: 280 tgcat 284
>gb|BQ634030.1|BQ634030 NXRV063_H09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_H09 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 727
Score = 89.7 bits (45), Expect = 2e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 351 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 410
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcc 705
|||||||| | ||||||||| ||||| || |||| ||| || ||||| || ||||| ||
Sbjct: 411 atgaacagttacaagaccatagacggccgaggcgtcaatgttcacattgcaaatggaccc 470
Query: 706 tgcat 710
|||||
Sbjct: 471 tgcat 475
>gb|DR684038.1|DR684038 EST1074115 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO21 3' end, mRNA sequence
Length = 771
Score = 89.7 bits (45), Expect = 2e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 570 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 629
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcc 705
|||||||| | ||||||||| ||||| || |||| ||| || ||||| || ||||| ||
Sbjct: 630 atgaacagttacaagaccatagacggccgaggcgtcaatgttcacattgcaaatggaccc 689
Query: 706 tgcat 710
|||||
Sbjct: 690 tgcat 694
>gb|DR695222.1|DR695222 EST1085315 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEM16 3' end, mRNA sequence
Length = 857
Score = 89.7 bits (45), Expect = 2e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 568 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 627
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcc 705
|||||||| | ||||||||| ||||| || |||| ||| || ||||| || ||||| ||
Sbjct: 628 atgaacagttacaagaccatagacggccgaggcgtcaatgttcacattgcaaatggaccc 687
Query: 706 tgcat 710
|||||
Sbjct: 688 tgcat 692
>gb|DT631856.1|DT631856 EST1146787 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD53 3' end, mRNA sequence
Length = 872
Score = 89.7 bits (45), Expect = 2e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 578 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 637
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcc 705
|||||||| | ||||||||| ||||| || |||| ||| || ||||| || ||||| ||
Sbjct: 638 atgaacagttacaagaccatagacggccgaggcgtcaatgttcacattgcaaatggaccc 697
Query: 706 tgcat 710
|||||
Sbjct: 698 tgcat 702
>gb|CX651754.1|CX651754 COLD1_54_C07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_C07_A029 5', mRNA sequence
Length = 290
Score = 85.7 bits (43), Expect = 3e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 20 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 79
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacat 692
|||||||| | ||||||||| ||||| || |||| ||| || |||||
Sbjct: 80 atgaacagttacaagaccatagacggccgaggcgtcaatgttcacat 126
>gb|BQ700242.1|BQ700242 NXRV103_B01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV103_B01 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 635
Score = 83.8 bits (42), Expect = 1e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 351 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 410
Query: 646 atgaacagcttcaagaccatcgacgg 671
|||||||| | ||||||||| |||||
Sbjct: 411 atgaacagttacaagaccatagacgg 436
>gb|DR745375.1|DR745375 RTCU1_28_H07.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_28_H07_A029 5', mRNA sequence
Length = 327
Score = 83.8 bits (42), Expect = 1e-014
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 239 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 298
Query: 646 atgaacagcttcaagaccatcgacgg 671
|||||||| | ||||||||| |||||
Sbjct: 299 atgaacagttacaagaccatagacgg 324
>gb|AW226228.1|AW226228 ST79H03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST79H03, mRNA sequence
Length = 350
Score = 81.8 bits (41), Expect = 4e-014
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 585 agagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcat 644
|||||| ||||||||| ||||| || | |||||||| ||||| || ||||||||||| ||
Sbjct: 31 agagcctctctggatcgtcttcgagagagacatggtgatcacactgaaggaggagctgat 90
Query: 645 catgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgc 704
||||||||| |||||||| || |||||| | |||| ||| || ||||| || || || |
Sbjct: 91 catgaacagtttcaagacaattgacggaaggggcgtcaatgtccacattgcaaacgggcc 150
Query: 705 ctgcatcac 713
|||||||||
Sbjct: 151 ctgcatcac 159
>gb|BE810207.1|BE810207 NXCI_061_D08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_061_D08 5' similar to Arabidopsis
thaliana sequence At4g24780 pectate lyase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 377
Score = 81.8 bits (41), Expect = 4e-014
Identities = 98/117 (83%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 32 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 91
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggt 702
|||||||| | |||||| |||||||| | |||||||| || ||||| |||||||||
Sbjct: 92 atgaacagttacaagacaatcgacggcagaggcgccaatgtccacattgccaatggt 148
>gb|BG039718.1|BG039718 NXSI_103_C07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_C07 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 547
Score = 81.8 bits (41), Expect = 4e-014
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 585 agagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcat 644
|||||| ||||||||| ||||| || | |||||||| ||||| || ||||||||||| ||
Sbjct: 148 agagcctctctggatcgtcttcgagagagacatggtgatcacactgaaggaggagctgat 207
Query: 645 catgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgc 704
||||||||| |||||||| || |||||| | |||| ||| || ||||| || || || |
Sbjct: 208 catgaacagtttcaagacaattgacggaaggggcgtcaatgtccacattgcaaacgggcc 267
Query: 705 ctgcatcac 713
|||||||||
Sbjct: 268 ctgcatcac 276
>gb|CF474563.1|CF474563 RTWW2_9_G09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_G09_A021 5', mRNA sequence
Length = 758
Score = 81.8 bits (41), Expect = 4e-014
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 291 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 350
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaa 698
|||||||| | |||||| |||||||| | |||||||| || |||||||||||
Sbjct: 351 atgaacagttacaagacaatcgacggcagaggcgccaatgtccacatcgccaa 403
>gb|DR090800.1|DR090800 RTAL1_17_A07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_17_A07_A029 5', mRNA sequence
Length = 704
Score = 81.8 bits (41), Expect = 4e-014
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 524 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 583
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaa 698
|||||||| | |||||| |||||||| | |||||||| || |||||||||||
Sbjct: 584 atgaacagttacaagacaatcgacggcagaggcgccaatgtccacatcgccaa 636
>gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 3', mRNA sequence
Length = 799
Score = 81.8 bits (41), Expect = 4e-014
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 742 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 683
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaa 698
|||||||| | |||||| |||||||| | |||||||| || |||||||||||
Sbjct: 682 atgaacagttacaagacaatcgacggcagaggcgccaatgtccacatcgccaa 630
>gb|BF778460.1|BF778460 NXSI_085_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_A08 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 294
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 95 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 154
Query: 646 atgaacagcttcaagaccat 665
|||||||| | |||||||||
Sbjct: 155 atgaacagttacaagaccat 174
>gb|BQ634633.1|BQ634633 NXRV071_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV071_D02 5' similar to Arabidopsis thaliana
sequence At1g04680 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 79.8 bits (40), Expect = 2e-013
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| |||||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 352 gagcctctgtggattatcttccagagggacatggtcatcatgctcaaagaagagctcatc 411
Query: 646 atgaacagcttcaagaccat 665
|||||||| | |||||||||
Sbjct: 412 atgaacagttacaagaccat 431
>gb|BQ696543.1|BQ696543 NXPV_042_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_042_E02 5' similar to Arabidopsis
thaliana sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 629
Score = 79.8 bits (40), Expect = 2e-013
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 611 gggacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacg 670
||||||||||||||| |||||| || ||||||||||||||||| | ||||||||| ||||
Sbjct: 4 gggacatggtcatcatgctcaaagaagagctcatcatgaacagttacaagaccatagacg 63
Query: 671 gacgcggcgccaacgtgcacatcgccaatggtgcctgcat 710
| || |||| ||| || ||||| || ||||| |||||||
Sbjct: 64 gccgaggcgtcaatgttcacattgcaaatggaccctgcat 103
>gb|BQ697346.1|BQ697346 NXPV_053_A10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_053_A10 5' similar to Arabidopsis
thaliana sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 79.8 bits (40), Expect = 2e-013
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 611 gggacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacg 670
||||||||||||||| |||||| || ||||||||||||||||| | ||||||||| ||||
Sbjct: 4 gggacatggtcatcatgctcaaagaagagctcatcatgaacagttacaagaccatagacg 63
Query: 671 gacgcggcgccaacgtgcacatcgccaatggtgcctgcat 710
| || |||| ||| || ||||| || ||||| |||||||
Sbjct: 64 gccgaggcgtcaatgttcacattgcaaatggaccctgcat 103
>gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 5', mRNA sequence
Length = 753
Score = 79.8 bits (40), Expect = 2e-013
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 595 tggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaacagc 654
||||||||||| || | |||||||||||| |||||| |||||||| |||||||||||
Sbjct: 6 tggatcatctttgagagagacatggtcatccagctcaaagaggagcttatcatgaacagt 65
Query: 655 ttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaa 698
| |||||| |||||||| | |||||||| || |||||||||||
Sbjct: 66 tacaagacaatcgacggcagaggcgccaatgtccacatcgccaa 109
>gb|DR180886.1|DR180886 RTMNUT1_35_A12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_A12_A029 5', mRNA sequence
Length = 767
Score = 79.8 bits (40), Expect = 2e-013
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 585 agagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcat 644
||||||||| ||||| || ||| || | |||||||||||| ||||||||||||||| ||
Sbjct: 624 agagccgctgtggattattttccagagagacatggtcatccagctcaaggaggagctgat 683
Query: 645 catgaacagcttcaagaccatcgacgga 672
||||||||| | |||||| |||||||||
Sbjct: 684 catgaacagttacaagacaatcgacgga 711
>gb|BX253884.1|BX253884 BX253884 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP089H11 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 662
Score = 77.8 bits (39), Expect = 6e-013
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| ||||| |||||||||||||||||| |||||| || || ||||||
Sbjct: 554 gagcctctgtggattatctttcagcgggacatggtcatcatgctcaaagaagaactcatc 613
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacat 692
|||||||| | ||||||||| ||||| || |||| ||| || |||||
Sbjct: 614 atgaacagttacaagaccatagacggccgtggcgtcaatgtacacat 660
>gb|BG040772.1|BG040772 NXSI_114_H07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_114_H07 5' similar to Arabidopsis thaliana
sequence At1g04680 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 542
Score = 77.8 bits (39), Expect = 6e-013
Identities = 129/159 (81%)
Strand = Plus / Plus
Query: 585 agagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcat 644
|||||| ||||||||||||||| || | || ||||||||| ||| ||||||||||| ||
Sbjct: 371 agagcctctctggatcatcttcgagagagatatggtcatccagctgaaggaggagctgat 430
Query: 645 catgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgc 704
||||||||| | ||| || ||||| ||| | |||| ||| |||||||| || || || |
Sbjct: 431 catgaacagttacaaaacaatcgatggaaggggcgtcaatgtgcacattgcaaacgggcc 490
Query: 705 ctgcatcaccatccagtacatcaccaacgtcatcatcca 743
||| |||||| | ||||| | |||||| ||||||||||
Sbjct: 491 ctgtatcaccgttcagtatgtgaccaacatcatcatcca 529
>gb|BQ699768.1|BQ699768 NXRV128_F12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_F12 5' similar to Arabidopsis thaliana
sequence At4g13710 putative pectate lyase A11 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 728
Score = 77.8 bits (39), Expect = 6e-013
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || |||||||||||| || | |||||||||||| |||||||||||| || |||
Sbjct: 228 gagcccctgtggatcatcttccagagagacatggtcatccagctcaaggaggaactgatc 287
Query: 646 atgaacagcttcaagaccatcgacgga 672
|||||||| | |||||| |||||||||
Sbjct: 288 atgaacagttacaagacaatcgacgga 314
>gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_35_H02_A029 3', mRNA sequence
Length = 753
Score = 77.8 bits (39), Expect = 6e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || |||||||||||| || | |||||||||||| |||||||||||| || |||
Sbjct: 630 gagcccctgtggatcatcttccagagagacatggtcatccagctcaaggaggaactgatc 571
Query: 646 atgaacagcttcaagaccatcgacgga 672
|||||||| | |||||| |||||||||
Sbjct: 570 atgaacagttacaagacaatcgacgga 544
>gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_B02_A015 5', mRNA sequence
Length = 585
Score = 75.8 bits (38), Expect = 3e-012
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 592 ctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatcatgaac 651
||||||||| ||||| || | |||||||| ||||| || ||||||||||| |||||||||
Sbjct: 4 ctctggatcgtcttcgagagagacatggtgatcacactgaaggaggagctgatcatgaac 63
Query: 652 agcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaatggtgcctgcatc 711
|| |||||||| || |||||| | |||| ||| || ||||| || || || ||||||||
Sbjct: 64 agtttcaagacaattgacggaaggggcgtcaatgtccacattgcaaacgggccctgcatc 123
Query: 712 ac 713
||
Sbjct: 124 ac 125
>gb|CF400248.1|CF400248 RTWW1_4_C07.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_C07_A015 3', mRNA sequence
Length = 715
Score = 73.8 bits (37), Expect = 1e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 425 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 366
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaa 698
|||||||| | |||||| |||||||| | |||||||| || ||||| |||||
Sbjct: 365 atgaacagttacaagacaatcgacggcagaggcgccaatgtccacattgccaa 313
>gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C02_A029 3', mRNA sequence
Length = 793
Score = 73.8 bits (37), Expect = 1e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 645 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 586
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaa 698
|||||||| | |||||| |||||||| | |||||||| || ||||| |||||
Sbjct: 585 atgaacagttacaagacaatcgacggcagaggcgccaatgtccacattgccaa 533
>gb|DR117585.1|DR117585 RTMG1_7_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G09_A029 5', mRNA sequence
Length = 875
Score = 73.8 bits (37), Expect = 1e-011
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 724 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 783
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacatcgccaa 698
|||||||| | | |||| |||||||| | |||||||| || |||||||||||
Sbjct: 784 atgaacagttactagacaatcgacggcagaggcgccaatgtccacatcgccaa 836
>gb|BM492945.1|BM492945 NXRV_032_E05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_032_E05 5' similar to Arabidopsis thaliana
sequence At1g04680 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 473
Score = 71.9 bits (36), Expect = 4e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| || ||| || ||||||||||||||| |||||| || |||||||||
Sbjct: 351 gagcctctgtggattattttccagagggacatggtcatcatgctcaaagaagagctcatc 410
Query: 646 atgaacagcttcaagaccat 665
|||||||| | |||||||||
Sbjct: 411 atgaacagttacaagaccat 430
>gb|BE582301.1|BE582301 NXCI_031_G04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_031_G04 5' similar to Arabidopsis
thaliana sequence At4g24780 pectate lyase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 330
Score = 69.9 bits (35), Expect = 2e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 42 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 101
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacat 692
|||||||| | |||||| |||||||| | |||||||| || |||||
Sbjct: 102 atgaacagttacaagacaatcgacggcagaggcgccaatgtccacat 148
>gb|BX680185.1|BX680185 BX680185 RS Pinus pinaster cDNA clone RS40C03, mRNA sequence
Length = 511
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || |||||||| |||||| | |||||||||||| | | ||||||||||| |||
Sbjct: 82 gagcccctgtggatcattttcaagagagacatggtcatccagttaaaggaggagctgatc 141
Query: 646 atgaacagcttcaagaccatcgacgga 672
|||||||| | |||||| |||||||||
Sbjct: 142 atgaacagttacaagacaatcgacgga 168
>gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_D05_A029 5', mRNA sequence
Length = 583
Score = 67.9 bits (34), Expect = 6e-010
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 613 gacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacgga 672
|||||||||||| |||||| |||||||| ||||||||||| | |||||| ||||||||
Sbjct: 3 gacatggtcatccagctcaaagaggagcttatcatgaacagttacaagacaatcgacggc 62
Query: 673 cgcggcgccaacgtgcacatcgccaa 698
| |||||||| || ||||| |||||
Sbjct: 63 agaggcgccaatgtccacattgccaa 88
>gb|DR689988.1|DR689988 EST1080074 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACP80 3' end, mRNA sequence
Length = 811
Score = 65.9 bits (33), Expect = 2e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 611 gggacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacg 670
|||||||||| |||| |||||| || ||||||||||||||||| | ||||||||| ||||
Sbjct: 159 gggacatggttatcatgctcaaagaagagctcatcatgaacagttacaagaccatagacg 218
Query: 671 g 671
|
Sbjct: 219 g 219
>gb|BF517621.1|BF517621 NXSI_028_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_028_A08 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 268
Score = 63.9 bits (32), Expect = 1e-008
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 585 agagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcat 644
|||||| ||||||||| ||||| || | |||||||| | || || ||||||||||| ||
Sbjct: 85 agagcctctctggatcgtcttcgagagagacatggtgannacactgaaggaggagctgat 144
Query: 645 catgaacagcttcaagac 662
||||||||| ||||||||
Sbjct: 145 catgaacagtttcaagac 162
>gb|CF399983.1|CF399983 RTWW1_2_H07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_H07_A015 5', mRNA sequence
Length = 778
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 374 tgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgc 417
|||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 710 tgtcttgcggaacgggcaaccccatcgacgactgctggcgctgc 753
>gb|CF478008.1|CF478008 RTWW3_17_E11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_E11_A022 5', mRNA sequence
Length = 709
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 374 tgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgc 417
|||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 266 tgtcttgcggaacgggcaaccccatcgacgactgctggcgctgc 309
Score = 60.0 bits (30), Expect = 1e-007
Identities = 126/158 (79%)
Strand = Plus / Plus
Query: 613 gacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacgga 672
|||||||||||| |||||| || ||||| |||||||||| | |||||| || ||||||
Sbjct: 505 gacatggtcatccagctcaaagaagagcttttcatgaacagttacaagacaatagacgga 564
Query: 673 cgcggcgccaacgtgcacatcgccaatggtgcctgcatcaccatccagtacatcaccaac 732
| || || || || ||||| ||||| ||||||||||| || | |||||| || | ||
Sbjct: 565 agaggtgcaaatgtccacattgccaacggtgcctgcattacggtacagtacgtccaccac 624
Query: 733 gtcatcatccacgggctccacatccacgactgcaagcc 770
| ||||| |||||| | |||||||| |||||||||||
Sbjct: 625 attatcattcacgggattcacatccatgactgcaagcc 662
>gb|CO200322.1|CO200322 GEO2_6_F04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F04_A032 5', mRNA sequence
Length = 866
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 613 gacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacgga 672
|||||||||||| |||||| || ||||| ||||||||||||| |||||| |||||||||
Sbjct: 663 gacatggtcatccagctcaaagaagagcttatcatgaacagctacaagacaatcgacgga 722
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 374 tgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgcga 419
|||| ||||| || || ||||||||||||||||| |||||||||||
Sbjct: 424 tgtcttgcggaacggggaaccccatcgacgactgttggcgctgcga 469
>gb|BX250216.1|BX250216 BX250216 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP033H01 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 664
Score = 61.9 bits (31), Expect = 4e-008
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||| ||||| |||||||||||||||||| |||| | || || ||||||
Sbjct: 541 gagcctctgtggattatctttcagcgggacatggtcatcatgctctaagaagaactcatc 600
Query: 646 atgaacagcttcaagaccatcgacggacgcggcgccaacgtgcacat 692
|||||||| | | ||||||| ||||| || |||| ||| || |||||
Sbjct: 601 atgaacagttaccagaccatagacggccgtggcgtcaatgtacacat 647
>gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 5', mRNA sequence
Length = 837
Score = 61.9 bits (31), Expect = 4e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 613 gacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacgg 671
|||||||||||| |||||| || ||||| ||||||||||||| |||||| ||||||||
Sbjct: 176 gacatggtcatccagctcaaagaagagcttatcatgaacagctacaagacaatcgacgg 234
>gb|DR048046.1|DR048046 RTBOR1_6_F07.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_F07_A029 3', mRNA sequence
Length = 682
Score = 61.9 bits (31), Expect = 4e-008
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 613 gacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacgg 671
|||||||||||| |||||| || ||||| ||||||||||||| |||||| ||||||||
Sbjct: 386 gacatggtcatccagctcaaagaagagcttatcatgaacagctacaagacgatcgacgg 328
Score = 60.0 bits (30), Expect = 1e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 391 aaccccatcgacgactgctggcgctgcgac 420
||||||||||||||||||||||||||||||
Sbjct: 608 aaccccatcgacgactgctggcgctgcgac 579
>gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_A06_A029 5', mRNA sequence
Length = 815
Score = 61.9 bits (31), Expect = 4e-008
Identities = 124/155 (80%)
Strand = Plus / Plus
Query: 556 ggcaccctccgctacgccgtcatccacgaagagccgctctggatcatcttcaagcgggac 615
||||| |||||| ||||||| || || || |||||||| ||||| || || || | |||
Sbjct: 64 ggcactctccgccacgccgttattcaagacgagccgctatggattatatttcagagcgac 123
Query: 616 atggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggacgc 675
|||||||| | |||||| || || ||| |||||||||| |||||||| ||||| || |
Sbjct: 124 atggtcattaggctcaaagaagaactcctcatgaacagtttcaagacaatcgatggcaga 183
Query: 676 ggcgccaacgtgcacatcgccaatggtgcctgcat 710
|||||| |||| ||||| ||| | || ||||||||
Sbjct: 184 ggcgccgacgttcacattgcccacggcgcctgcat 218
>gb|CF401168.1|CF401168 RTWW1_10_B05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_B05_A015 5', mRNA sequence
Length = 738
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| |||||| |||||||| |||
Sbjct: 178 gagcctctgtggatcatctttgagagagacatggtcatccagctcaaagaggagcttatc 237
Query: 646 atgaacagcttcaagaccatcgacgg 671
||||| || | |||||| ||||||||
Sbjct: 238 atgaatagttacaagacaatcgacgg 263
>gb|CV033627.1|CV033627 RTNACL1_35_D11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_D11_A029 5', mRNA sequence
Length = 685
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 374 tgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgc 417
|||| ||||| || || |||||||||||||||||||||||||||
Sbjct: 512 tgtcttgcggaacggggaaccccatcgacgactgctggcgctgc 555
>gb|DR177509.1|DR177509 RTMNUT1_5_F01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_5_F01_A029 5', mRNA sequence
Length = 671
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 374 tgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgc 417
|||| ||||| || || |||||||||||||||||||||||||||
Sbjct: 446 tgtcttgcggaacggggaaccccatcgacgactgctggcgctgc 489
>gb|DR060099.1|DR060099 RTNIT1_25_E07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_E07_A029 5', mRNA sequence
Length = 841
Score = 54.0 bits (27), Expect = 9e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 613 gacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacgg 671
||||||||||| |||||| || ||||| ||||||||||||| |||||| ||||||||
Sbjct: 780 gacatggtcatgcagctcaaagaagagcttatcatgaacagctacaagacaatcgacgg 838
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 373 ctgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgcga 419
||||| ||||| || || |||||||| ||||||||||||||||||||
Sbjct: 540 ctgtcttgcggaaccggtaaccccattgacgactgctggcgctgcga 586
>gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D07_A021 5', mRNA
sequence
Length = 638
Score = 52.0 bits (26), Expect = 4e-005
Identities = 122/154 (79%)
Strand = Plus / Plus
Query: 617 tggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacggacgcg 676
|||||||| |||||| || ||||| |||||||||| | |||||| || |||||| | |
Sbjct: 1 tggtcatccagctcaaagaagagcttttcatgaacagttacaagacaatagacggaagag 60
Query: 677 gcgccaacgtgcacatcgccaatggtgcctgcatcaccatccagtacatcaccaacgtca 736
| || || || ||||| ||||| ||||||||||| || | |||||| || | || | |
Sbjct: 61 gtgcaaatgtccacattgccaacggtgcctgcattacggtacagtacgtccaccacatta 120
Query: 737 tcatccacgggctccacatccacgactgcaagcc 770
|||| |||||| | |||||||| |||||||||||
Sbjct: 121 tcattcacgggattcacatccatgactgcaagcc 154
>gb|CF390665.1|CF390665 RTDR2_20_H04.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_20_H04_A021 5', mRNA
sequence
Length = 704
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 631 aaggaggagctcatcatgaacagcttcaagaccatcgacgga 672
||||||||||| ||||||||||| | |||||| |||||||||
Sbjct: 15 aaggaggagctgatcatgaacagttacaagacaatcgacgga 56
>gb|DR078591.1|DR078591 RTFEPL1_5_E02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_E02_A029 5', mRNA sequence
Length = 748
Score = 50.1 bits (25), Expect = 1e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 586 gagccgctctggatcatcttcaagcgggacatggtcatcacgctcaaggaggagctcatc 645
||||| || ||||||||||| || | |||||||||||| ||||| |||||||| |||
Sbjct: 678 gagcctctgtggatcatctttgagagagacatggtcatccagctcanagaggagcttatc 737
Query: 646 atgaacag 653
||||||||
Sbjct: 738 atgaacag 745
>gb|AW226312.1|AW226312 ST80H09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST80H09, mRNA sequence
Length = 377
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 374 tgtcgtgcgggacaggcaaccccatcgacgactgctggcgctgc 417
|||| ||||| || || ||||||||||||||||||||| |||||
Sbjct: 262 tgtcttgcggaacggggaaccccatcgacgactgctggggctgc 305
>gb|CF478056.1|CF478056 RTWW3_17_A02.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_A02_A022 5', mRNA sequence
Length = 549
Score = 48.1 bits (24), Expect = 6e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 613 gacatggtcatcacgctcaaggaggagctcatcatgaacagcttcaagaccatcgacgga 672
||||||||||| ||||||||| |||||| | || |||||||||| || ||||| |||
Sbjct: 259 gacatggtcattcagctcaaggaagagctcgttattcacagcttcaaaacaatcgatgga 318
Query: 673 cgcggcgccaacgtgcacat 692
|| |||||||| || |||||
Sbjct: 319 cgaggcgccaaagtccacat 338
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,139
Number of Sequences: 355925
Number of extensions: 78139
Number of successful extensions: 18766
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18669
Number of HSP's gapped (non-prelim): 94
length of query: 819
length of database: 217,277,237
effective HSP length: 19
effective length of query: 800
effective length of database: 210,514,662
effective search space: 168411729600
effective search space used: 168411729600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)