BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750663.2.1
(1282 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR093969.1|DR093969 STRR1_11_C10.g1_A033 Stem Response R... 50 2e-004
gb|CO197016.1|CO197016 GEO1_3_G11.b1_A029 Root gravitropism... 40 0.22
gb|CO201172.1|CO201172 RTCNT2_4_C08.b1_A029 Root control 2 ... 40 0.22
gb|CV032935.1|CV032935 RTNACL1_19_E08.b1_A029 Roots plus ad... 40 0.22
gb|CX652889.1|CX652889 COLD1_62_D06.b1_A029 Root cold Pinus... 40 0.22
gb|DR013943.1|DR013943 HEAT1_22_A12.g1_A029 Root at 37 C fo... 40 0.22
>gb|DR093969.1|DR093969 STRR1_11_C10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_11_C10_A033 5', mRNA sequence
Length = 782
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 842 catcaagtccagggcacggacagacctatcagctaaaccaactctagactcggcaaa 898
|||||||||||| ||||| | |||||| ||||| |||||||| | |||||| |||||
Sbjct: 723 catcaagtccagagcacgcaaagacctgtcagccaaaccaacccgagactctgcaaa 667
>gb|CO197016.1|CO197016 GEO1_3_G11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_G11_A029 3', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 540 ttctgggagtggttctggct 559
||||||||||||||||||||
Sbjct: 74 ttctgggagtggttctggct 93
>gb|CO201172.1|CO201172 RTCNT2_4_C08.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_C08_A029 3', mRNA sequence
Length = 801
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 540 ttctgggagtggttctggct 559
||||||||||||||||||||
Sbjct: 354 ttctgggagtggttctggct 373
>gb|CV032935.1|CV032935 RTNACL1_19_E08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_E08_A029 3', mRNA sequence
Length = 856
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 540 ttctgggagtggttctggct 559
||||||||||||||||||||
Sbjct: 405 ttctgggagtggttctggct 424
>gb|CX652889.1|CX652889 COLD1_62_D06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_D06_A029 3', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 540 ttctgggagtggttctggct 559
||||||||||||||||||||
Sbjct: 322 ttctgggagtggttctggct 341
>gb|DR013943.1|DR013943 HEAT1_22_A12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_A12_A029 5', mRNA sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 540 ttctgggagtggttctggct 559
||||||||||||||||||||
Sbjct: 422 ttctgggagtggttctggct 403
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,638
Number of Sequences: 355925
Number of extensions: 128638
Number of successful extensions: 34454
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34448
Number of HSP's gapped (non-prelim): 6
length of query: 1282
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1263
effective length of database: 210,514,662
effective search space: 265880018106
effective search space used: 265880018106
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)