BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 60 3e-007
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 60 3e-007
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 60 3e-007
gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus ad... 60 3e-007
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 58 1e-006
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 58 1e-006
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 58 1e-006
gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus ad... 58 1e-006
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 58 1e-006
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 58 1e-006
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 58 1e-006
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 56 4e-006
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 54 2e-005
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 52 6e-005
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 52 6e-005
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 52 6e-005
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 52 6e-005
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 52 6e-005
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 52 6e-005
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 52 6e-005
gb|AF006210.1|AF006210 Pinus resinosa MADS box transcriptio... 52 6e-005
gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA,... 52 6e-005
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 50 2e-004
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 50 2e-004
gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus ... 44 0.015
gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus add... 44 0.015
gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus add... 44 0.015
gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfu... 44 0.015
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 42 0.059
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 42 0.059
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 42 0.059
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 42 0.059
gb|CF394132.1|CF394132 RTDS2_3_D04.g1_A021 Drought-stressed... 42 0.059
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 42 0.059
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 42 0.059
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 42 0.059
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 42 0.059
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 42 0.059
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 42 0.059
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 42 0.059
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 42 0.059
gb|CO201026.1|CO201026 RTCNT2_3_D12.b1_A029 Root control 2 ... 40 0.23
gb|DR177921.1|DR177921 RTMNUT1_8_E05.b1_A029 Roots minus mi... 40 0.23
gb|U90348.1|PRU90348 Pinus radiata putative MADS box transc... 40 0.23
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 60.0 bits (30), Expect = 3e-007
Identities = 87/106 (82%)
Strand = Plus / Minus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | ||||| || |||||||| |
Sbjct: 431 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaagaaagcctacgagcttt 372
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 371 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 326
>gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 3', mRNA sequence
Length = 860
Score = 60.0 bits (30), Expect = 3e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | ||||| || |||||||| |
Sbjct: 210 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaagaaagcctacgagcttt 269
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 270 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 315
>gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 5', mRNA sequence
Length = 820
Score = 60.0 bits (30), Expect = 3e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | ||||| || |||||||| |
Sbjct: 453 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaagaaagcctacgagcttt 512
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 513 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 558
>gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_G03_A029 3', mRNA sequence
Length = 839
Score = 60.0 bits (30), Expect = 3e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 aagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctcc 392
||||| ||||| ||||| || ||||| |||||||| || |||||| |||||||||||||
Sbjct: 40 aagaaagcgtatgagctgtctgtgctntgcgacgcagaagtcgcggtcatcgtcttctca 99
Query: 393 agccg 397
|||||
Sbjct: 100 agccg 104
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 58.0 bits (29), Expect = 1e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 311 caagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
||||||||| ||||| || || ||||||||||||||||| || ||||| ||||| |||||
Sbjct: 89 caagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccga 148
Query: 371 ggtcgcgct 379
|| |||||
Sbjct: 149 agtggcgct 157
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 58.0 bits (29), Expect = 1e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 311 caagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
||||||||| ||||| || || ||||||||||||||||| || ||||| ||||| |||||
Sbjct: 150 caagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccga 209
Query: 371 ggtcgcgct 379
|| |||||
Sbjct: 210 agtggcgct 218
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 436
Score = 58.0 bits (29), Expect = 1e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 311 caagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
||||||||| ||||| || || ||||||||||||||||| || ||||| ||||| |||||
Sbjct: 127 caagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccga 186
Query: 371 ggtcgcgct 379
|| |||||
Sbjct: 187 agtggcgct 195
>gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_G03_A029 5', mRNA sequence
Length = 796
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 aagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctcc 392
||||| ||||| ||||| || ||||| |||||||| || |||||| |||||||||||||
Sbjct: 256 aagaaagcgtatgagctgtctgtgctttgcgacgcagaagtcgcggtcatcgtcttctca 315
Query: 393 agccg 397
|||||
Sbjct: 316 agccg 320
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_D01_A029 5', mRNA sequence
Length = 705
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 312 aagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcga 364
|||||||||||||| || || ||||| || ||||||||||| |||||||||||
Sbjct: 233 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 285
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 312 aagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcga 364
|||||||||||||| || || ||||| || ||||||||||| |||||||||||
Sbjct: 246 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 298
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 312 aagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcga 364
|||||||||||||| || || ||||| || ||||||||||| |||||||||||
Sbjct: 235 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 287
>gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS3) mRNA, complete cds
Length = 1130
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 312 aagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgag 371
|||||||| ||||| || || ||||||||||||||||| || ||||| ||||| |||||
Sbjct: 67 aagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccgaa 126
Query: 372 gtcgcgct 379
|| |||||
Sbjct: 127 gtggcgct 134
>gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST08G08, mRNA sequence
Length = 927
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcga 364
|||||||||||| || || ||||| || ||||||||||| |||||||||||
Sbjct: 169 gcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 219
>gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_017_H01 5' similar to Arabidopsis thaliana
sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 52.0 bits (26), Expect = 6e-005
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 312 aagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcga 364
|||||||||||||| || || ||||| || |||| |||||| |||||||||||
Sbjct: 341 aagcgccgcaacgggctgctgaagaaagcttacgngctctcggtgctctgcga 393
>gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_A03_A029 5', mRNA sequence
Length = 764
Score = 52.0 bits (26), Expect = 6e-005
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | || || || |||||||| |
Sbjct: 432 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaaaaaagcctacgagcttt 491
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 492 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 537
>gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 5', mRNA sequence
Length = 758
Score = 52.0 bits (26), Expect = 6e-005
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | || || || |||||||| |
Sbjct: 239 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaaaaaagcctacgagcttt 298
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 299 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 344
>gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D10_A029 3', mRNA sequence
Length = 867
Score = 52.0 bits (26), Expect = 6e-005
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | || || || |||||||| |
Sbjct: 601 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaaaaaagcctacgagcttt 542
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 541 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 496
>gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_B05_A029 5', mRNA sequence
Length = 851
Score = 52.0 bits (26), Expect = 6e-005
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | || || || |||||||| |
Sbjct: 225 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaaaaaagcctacgagcttt 284
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 285 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 330
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 52.0 bits (26), Expect = 6e-005
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | || || || |||||||| |
Sbjct: 247 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaaaaaagcctacgagcttt 306
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 307 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 352
>gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 5', mRNA sequence
Length = 779
Score = 52.0 bits (26), Expect = 6e-005
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctct 351
|||||||||| ||||||||||||||||| ||| || | || || || |||||||| |
Sbjct: 311 acaggcaggtgaccttctgcaagcgccgaggcggtctgatgaaaaaagcctacgagcttt 370
Query: 352 ccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
| ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 371 cagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 416
>gb|AF006210.1|AF006210 Pinus resinosa MADS box transcription factor mRNA, complete cds
Length = 1726
Score = 52.0 bits (26), Expect = 6e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 417 gccaacaacagcgtgaagggcaccattgagaggtacaagaag 458
|||||| ||||||||||| | || ||||||||||||||||||
Sbjct: 646 gccaaccacagcgtgaagaggacgattgagaggtacaagaag 687
>gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA, complete cds
Length = 922
Score = 52.0 bits (26), Expect = 6e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 417 gccaacaacagcgtgaagggcaccattgagaggtacaagaag 458
|||||| ||||||||||| | || ||||||||||||||||||
Sbjct: 185 gccaaccacagcgtgaagaggacgattgagaggtacaagaag 226
>gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_14_B10_A015 5', mRNA
sequence
Length = 821
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 312 aagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcga 364
|||||||||||||| || || ||||| || || |||||||| |||||||||||
Sbjct: 298 aagcgccgcaacgggctgctgaagaaagcttaggagctctcggtgctctgcga 350
>gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_B04_A029 5', mRNA sequence
Length = 840
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 312 aagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcga 364
|||||||||||||| || || ||||| || || |||||||| |||||||||||
Sbjct: 214 aagcgccgcaacgggctgctgaagaaagcttaggagctctcggtgctctgcga 266
>gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_1_H11_A029 3', mRNA sequence
Length = 793
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 acaggcaggtcaccttctgcaagcgc 317
|||||||||| |||||||||||||||
Sbjct: 568 acaggcaggtgaccttctgcaagcgc 543
>gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_32_A11_A029 3', mRNA sequence
Length = 792
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 acaggcaggtcaccttctgcaagcgc 317
|||||||||| |||||||||||||||
Sbjct: 576 acaggcaggtgaccttctgcaagcgc 551
>gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_32_A11_A029 5', mRNA sequence
Length = 822
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 292 acaggcaggtcaccttctgcaagcgc 317
|||||||||| |||||||||||||||
Sbjct: 732 acaggcaggtgaccttctgcaagcgc 707
>gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_G12_A029 5', mRNA sequence
Length = 826
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 292 acaggcaggtcaccttctgcaagcgc 317
|||||||||| |||||||||||||||
Sbjct: 232 acaggcaggtgaccttctgcaagcgc 257
>gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5', mRNA sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 271 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 311
>gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_020_D12 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 262 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 302
>gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_E02 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 262 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 302
>gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5' similar to Arabidopsis thaliana sequence
At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 271 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 311
>gb|CF394132.1|CF394132 RTDS2_3_D04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 5', mRNA sequence
Length = 761
Score = 42.1 bits (21), Expect = 0.059
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 333 aagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctcc 392
||||| || |||||||| || ||||| ||||| || || || |||||||| || ||||||
Sbjct: 738 aagaaagcctacgagctttcagtgctgtgcgatgcagatgtagcgctcattgttttctcc 679
Query: 393 agccg 397
|||||
Sbjct: 678 agccg 674
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 128 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 168
>gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_D06_A029 5', mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 44 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 84
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 261 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 301
>gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_E04_A032 5', mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 153 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 193
>gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_E02_A032 5', mRNA sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 176 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 216
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 230 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 270
>gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 3', mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 41 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 81
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccga 370
|||||||| || |||||||| || ||||||||||| |||||
Sbjct: 333 ctcaagaaagcttacgagctgtcggtgctctgcgatgccga 373
>gb|CO201026.1|CO201026 RTCNT2_3_D12.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 3', mRNA sequence
Length = 761
Score = 40.1 bits (20), Expect = 0.23
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 342 tacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
|||||||| || ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 14 tacgagctttcagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 69
>gb|DR177921.1|DR177921 RTMNUT1_8_E05.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 3', mRNA sequence
Length = 785
Score = 40.1 bits (20), Expect = 0.23
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 342 tacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagccg 397
|||||||| || ||||| ||||| || || || |||||||| || |||||||||||
Sbjct: 33 tacgagctttcagtgctgtgcgatgcagatgtagcgctcattgttttctccagccg 88
>gb|U90348.1|PRU90348 Pinus radiata putative MADS box transcription factor PrMADS7 mRNA,
complete cds
Length = 866
Score = 40.1 bits (20), Expect = 0.23
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 287 gaccaacaggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacga 346
||||| ||||||||| || || || |||||| | ||||| || || ||||| || |||||
Sbjct: 153 gaccagcaggcaggttactttttgtaagcgcaggaacggtctgctgaagaaagcttacga 212
Query: 347 gctctccgtgct 358
|||||| |||||
Sbjct: 213 gctctcggtgct 224
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167,551
Number of Sequences: 355925
Number of extensions: 167551
Number of successful extensions: 48920
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48841
Number of HSP's gapped (non-prelim): 76
length of query: 1354
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1335
effective length of database: 210,514,662
effective search space: 281037073770
effective search space used: 281037073770
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)