BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF388304.1|CF388304 RTDR2_2_E03.b1_A021 Loblolly pine ro... 58 7e-007
gb|DR695084.1|DR695084 EST1085177 Normalized pine embryo li... 42 0.043
gb|DT638907.1|DT638907 EST1153838 Normalized pine embryo li... 42 0.043
gb|AA556918.1|AA556918 760 Loblolly pine C Pinus taeda cDNA... 40 0.17
gb|AW626629.1|AW626629 NXNV067F03 Nsf Xylem Normal wood Ver... 40 0.17
gb|BG039533.1|BG039533 NXSI_100_B05_F NXSI (Nsf Xylem Side ... 40 0.17
gb|DN460531.1|DN460531 EST956330 Sequencing ESTs from loblo... 40 0.17
gb|DR692891.1|DR692891 EST1082979 Normalized pine embryo li... 40 0.17
gb|DT626864.1|DT626864 EST1159940 Sequencing ESTs from lobl... 40 0.17
gb|DT637802.1|DT637802 EST1152733 Normalized pine embryo li... 40 0.17
gb|AF231784.1|AF231784 Pinus taeda clone G18c6 microsatelli... 40 0.17
>gb|CF388304.1|CF388304 RTDR2_2_E03.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_2_E03_A021 3', mRNA
sequence
Length = 536
Score = 58.0 bits (29), Expect = 7e-007
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 553 aggcacgttctcagacgacatgatcaccaccggaatgtccgtgagcgatgaggacccctt 612
||||||||||||||| ||||||| |||||| ||||| ||| ||||| |||||| ||||
Sbjct: 83 aggcacgttctcagaggacatgaccaccacaggaatctccttgagctttgaggattcctt 24
Query: 613 cactcgcgtgagcagatcgta 633
|||| | |||||| ||||||
Sbjct: 23 tactctcttgagcaaatcgta 3
>gb|DR695084.1|DR695084 EST1085177 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK27 3' end, mRNA sequence
Length = 826
Score = 42.1 bits (21), Expect = 0.043
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 556 cacgttctcagacgacatgatcaccaccggaat 588
|||||||||||| ||||||| |||||| |||||
Sbjct: 768 cacgttctcagatgacatgaccaccacaggaat 736
>gb|DT638907.1|DT638907 EST1153838 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHK82 3' end, mRNA sequence
Length = 826
Score = 42.1 bits (21), Expect = 0.043
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 556 cacgttctcagacgacatgatcaccaccggaat 588
|||||||||||| ||||||| |||||| |||||
Sbjct: 776 cacgttctcagatgacatgaccaccacaggaat 744
>gb|AA556918.1|AA556918 760 Loblolly pine C Pinus taeda cDNA clone 7C3F, mRNA sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
||||| |||||||| ||||||||||| |||||
Sbjct: 368 gaggaggacgacgacgatgaggaggacgatga 399
>gb|AW626629.1|AW626629 NXNV067F03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV067F03 5', mRNA sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
||||| |||||||| ||||||||||| |||||
Sbjct: 203 gaggaggacgacgacgatgaggaggacgatga 234
>gb|BG039533.1|BG039533 NXSI_100_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_100_B05 5', mRNA sequence
Length = 409
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
||||| |||||||| ||||||||||| |||||
Sbjct: 226 gaggaggacgacgacgatgaggaggacgatga 257
>gb|DN460531.1|DN460531 EST956330 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHZ62 5' end, mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
||||| |||||||| ||||||||||| |||||
Sbjct: 491 gaggaggacgacgacgatgaggaggacgatga 522
>gb|DR692891.1|DR692891 EST1082979 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADR59 3' end, mRNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 569 gacatgatcaccaccggaatgtccgtga 596
||||| |||||||| |||||||||||||
Sbjct: 665 gacattatcaccacaggaatgtccgtga 638
>gb|DT626864.1|DT626864 EST1159940 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAS25 5' end, mRNA sequence
Length = 744
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
||||| |||||||| ||||||||||| |||||
Sbjct: 491 gaggaggacgacgacgatgaggaggacgatga 522
>gb|DT637802.1|DT637802 EST1152733 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH768 3' end, mRNA sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 569 gacatgatcaccaccggaatgtccgtga 596
||||| |||||||| |||||||||||||
Sbjct: 673 gacattatcaccacaggaatgtccgtga 646
>gb|AF231784.1|AF231784 Pinus taeda clone G18c6 microsatellite sequence
Length = 357
Score = 40.1 bits (20), Expect = 0.17
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 704 gacgacgacgaagatgaggaggaggatgacggcggcgacg 743
||||||||||| || || || || ||||||||||||||||
Sbjct: 19 gacgacgacgacgacgacgacgacgatgacggcggcgacg 58
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,312
Number of Sequences: 355925
Number of extensions: 131312
Number of successful extensions: 33686
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33645
Number of HSP's gapped (non-prelim): 40
length of query: 991
length of database: 217,277,237
effective HSP length: 19
effective length of query: 972
effective length of database: 210,514,662
effective search space: 204620251464
effective search space used: 204620251464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)