BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2622915.2.1
         (584 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV135644.1|CV135644  EST846853 Sequencing ESTs from loblo...    38   0.39 
gb|DR078219.1|DR078219  RTFEPL1_2_E07.g1_A029 Roots plus add...    38   0.39 
gb|DT626523.1|DT626523  EST1158447 Sequencing ESTs from lobl...    38   0.39 

>gb|CV135644.1|CV135644 EST846853 Sequencing ESTs from loblolly pine embryos Pinus taeda
           cDNA clone PICME63 5' end, mRNA sequence
          Length = 832

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 542 tgagcttcaacagtcttcaatac 564
           ||||| |||||||||||||||||
Sbjct: 578 tgagcatcaacagtcttcaatac 556



>gb|DR078219.1|DR078219 RTFEPL1_2_E07.g1_A029 Roots plus added iron Pinus taeda cDNA clone
           RTFEPL1_2_E07_A029 5', mRNA sequence
          Length = 712

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 258 cagattcttcttcttcact 276
           |||||||||||||||||||
Sbjct: 107 cagattcttcttcttcact 125



>gb|DT626523.1|DT626523 EST1158447 Sequencing ESTs from loblolly pine embryos Pinus taeda
           cDNA clone PIMAB73 5' end, mRNA sequence
          Length = 832

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 542 tgagcttcaacagtcttcaatac 564
           ||||| |||||||||||||||||
Sbjct: 578 tgagcatcaacagtcttcaatac 556



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,076
Number of Sequences: 355925
Number of extensions: 81076
Number of successful extensions: 26203
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26198
Number of HSP's gapped (non-prelim): 5
length of query: 584
length of database: 217,277,237
effective HSP length: 19
effective length of query: 565
effective length of database: 210,514,662
effective search space: 118940784030
effective search space used: 118940784030
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)