BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF476704.1|CF476704 RTWW3_3_B12.b1_A022 Well-watered lob... 100 2e-019
gb|CF479386.1|CF479386 RTWW3_23_D10.g1_A022 Well-watered lo... 100 2e-019
gb|CF667790.1|CF667790 RTCNT1_32_B11.g1_A029 Root control P... 100 2e-019
gb|CF673140.1|CF673140 RTCNT1_76_H09.b1_A029 Root control P... 100 2e-019
gb|CF673205.1|CF673205 RTCNT1_76_H09.g1_A029 Root control P... 100 2e-019
gb|CO361933.1|CO361933 NDL2_8_B10.b1_A029 Needles control 2... 100 2e-019
gb|CO362008.1|CO362008 NDL2_8_B10.g1_A029 Needles control 2... 100 2e-019
gb|DR023146.1|DR023146 STRS1_55_F06.g1_A034 Shoot tip pitch... 100 2e-019
gb|CF387264.1|CF387264 RTDR1_11_H07.g1_A015 Loblolly pine r... 92 4e-017
gb|CF400128.1|CF400128 RTWW1_3_C08.g1_A015 Well-watered lob... 92 4e-017
gb|CF400432.1|CF400432 RTWW1_5_B03.g1_A015 Well-watered lob... 92 4e-017
gb|CF401695.1|CF401695 RTWW1_14_C10.g1_A015 Well-watered lo... 92 4e-017
gb|CF402748.1|CF402748 RTWW1_22_F11.g1_A015 Well-watered lo... 92 4e-017
gb|CF475177.1|CF475177 RTWW2_14_D03.g1_A021 Well-watered lo... 92 4e-017
gb|CF664045.1|CF664045 RTCNT1_7_A06.b1_A029 Root control Pi... 92 4e-017
gb|CF664119.1|CF664119 RTCNT1_7_A06.g1_A029 Root control Pi... 92 4e-017
gb|CO363007.1|CO363007 RTK1_7_C06.b1_A029 Roots minus potas... 92 4e-017
gb|CO363086.1|CO363086 RTK1_7_C06.g1_A029 Roots minus potas... 92 4e-017
gb|DR014413.1|DR014413 HEAT1_49_G08.b1_A029 Root at 37 C fo... 92 4e-017
gb|DR014494.1|DR014494 HEAT1_49_G08.g1_A029 Root at 37 C fo... 92 4e-017
gb|DR080673.1|DR080673 RTFEPL1_24_H08.b1_A029 Roots plus ad... 92 4e-017
gb|DR744308.1|DR744308 RTCU1_21_D04.g1_A029 Roots plus adde... 92 4e-017
dbj|BD236689.1| Materials and method for modification of pl... 92 4e-017
dbj|BD236724.1| Materials and method for modification of pl... 92 4e-017
dbj|BD236726.1| Materials and method for modification of pl... 92 4e-017
dbj|BD236758.1| Materials and method for modification of pl... 92 4e-017
dbj|BD236765.1| Materials and method for modification of pl... 92 4e-017
gb|BX254013.1|BX254013 BX254013 Pinus pinaster differenciat... 90 2e-016
gb|BF778402.1|BF778402 NXSI_082_H01_F NXSI (Nsf Xylem Side ... 84 1e-014
gb|BQ701367.1|BQ701367 NXSI_063_D03_F NXSI (Nsf Xylem Side ... 84 1e-014
gb|BQ702509.1|BQ702509 NXSI_129_D10_F NXSI (Nsf Xylem Side ... 84 1e-014
gb|BE187307.1|BE187307 NXNV_162_C11_F Nsf Xylem Normal wood... 80 2e-013
dbj|BD236738.1| Materials and method for modification of pl... 78 6e-013
gb|AW290172.1|AW290172 NXNV015B09F Nsf Xylem Normal wood Ve... 76 2e-012
gb|BE241387.1|BE241387 NXNV_187_F06_F Nsf Xylem Normal wood... 76 2e-012
gb|BE241400.1|BE241400 NXNV_187_H07_F Nsf Xylem Normal wood... 76 2e-012
gb|CD026837.1|CD026837 NXNV015B09 Nsf Xylem Normal wood Ver... 76 2e-012
gb|CF477400.1|CF477400 RTWW3_7_E06.g1_A022 Well-watered lob... 76 2e-012
gb|CO201770.1|CO201770 RTCNT2_8_B11.b1_A029 Root control 2 ... 76 2e-012
gb|CO201845.1|CO201845 RTCNT2_8_B11.g1_A029 Root control 2 ... 76 2e-012
gb|CO367098.1|CO367098 RTK1_32_D07.b1_A029 Roots minus pota... 76 2e-012
gb|CO367170.1|CO367170 RTK1_32_D07.g1_A029 Roots minus pota... 76 2e-012
gb|CX714485.1|CX714485 RTPQ1_22_F11.g1_A032 Roots treated w... 76 2e-012
gb|CX715566.1|CX715566 RTPQ1_35_B05.b1_A032 Roots treated w... 76 2e-012
gb|DR090010.1|DR090010 RTAL1_12_E04.b1_A029 Roots plus adde... 76 2e-012
gb|DR160998.1|DR160998 RTFE1_9_F01.b1_A029 Roots minus iron... 76 2e-012
gb|DR161081.1|DR161081 RTFE1_9_F01.g1_A029 Roots minus iron... 76 2e-012
gb|BF516630.1|BF516630 NXSI_001_C11_F NXSI (Nsf Xylem Side ... 74 1e-011
gb|CF400467.1|CF400467 RTWW1_5_D01.g1_A015 Well-watered lob... 74 1e-011
gb|CO364357.1|CO364357 RTK1_15_F06.b1_A029 Roots minus pota... 72 4e-011
gb|CO364447.1|CO364447 RTK1_15_F06.g1_A029 Roots minus pota... 72 4e-011
gb|CO365644.1|CO365644 RTK1_18_G08.b1_A029 Roots minus pota... 72 4e-011
gb|CO366296.1|CO366296 RTK1_27_B08.b1_A029 Roots minus pota... 72 4e-011
gb|CO366377.1|CO366377 RTK1_27_B08.g1_A029 Roots minus pota... 72 4e-011
gb|DR049848.1|DR049848 RTBOR1_19_B04.g1_A029 Roots plus add... 72 4e-011
gb|DR051576.1|DR051576 RTBOR1_31_B03.b1_A029 Roots plus add... 72 4e-011
gb|DR051651.1|DR051651 RTBOR1_31_B03.g1_A029 Roots plus add... 72 4e-011
gb|DR060016.1|DR060016 RTNIT1_25_E02.b1_A029 Roots minus ni... 72 4e-011
gb|DR119274.1|DR119274 RTMG1_22_F08.b1_A029 Roots minus mag... 72 4e-011
gb|DR388772.1|DR388772 RTHG1_30_H08.b1_A029 Roots plus adde... 72 4e-011
gb|DR388861.1|DR388861 RTHG1_30_H08.g1_A029 Roots plus adde... 72 4e-011
gb|CF477347.1|CF477347 RTWW3_7_E06.b1_A022 Well-watered lob... 70 1e-010
gb|CF478358.1|CF478358 RTWW3_18_A09.g1_A022 Well-watered lo... 68 6e-010
gb|BX251676.1|BX251676 BX251676 Pinus pinaster differenciat... 66 2e-009
gb|AW984899.1|AW984899 NXNV_100_F01_F Nsf Xylem Normal wood... 66 2e-009
gb|BG040804.1|BG040804 NXSI_115_D02_F NXSI (Nsf Xylem Side ... 66 2e-009
gb|CD028004.1|CD028004 NXNV_144_G06_F Nsf Xylem Normal wood... 66 2e-009
gb|DR079955.1|DR079955 RTFEPL1_19_B01.b1_A029 Roots plus ad... 66 2e-009
dbj|BD236721.1| Materials and method for modification of pl... 66 2e-009
dbj|BD236768.1| Materials and method for modification of pl... 66 2e-009
gb|CF386184.1|CF386184 RTDR1_8_G11.g1_A015 Loblolly pine ro... 64 9e-009
gb|CF387358.1|CF387358 RTDR1_12_C10.g1_A015 Loblolly pine r... 64 9e-009
gb|CF403048.1|CF403048 RTWW1_24_H09.g1_A015 Well-watered lo... 64 9e-009
gb|CO197092.1|CO197092 GEO1_3_G10.g1_A029 Root gravitropism... 64 9e-009
gb|CO367920.1|CO367920 RTK1_37_B10.g1_A029 Roots minus pota... 64 9e-009
gb|CF387702.1|CF387702 RTDR1_19_C04.g1_A015 Loblolly pine r... 62 4e-008
gb|DR058835.1|DR058835 RTNIT1_14_E03.b1_A029 Roots minus ni... 62 4e-008
gb|BM493576.1|BM493576 NXLV_066_G01_F NXLV (Nsf Xylem Late ... 60 1e-007
gb|BX251055.1|BX251055 BX251055 Pinus pinaster differenciat... 58 6e-007
gb|BF609107.1|BF609107 NXSI_040_E01_F NXSI (Nsf Xylem Side ... 58 6e-007
gb|CF387829.1|CF387829 RTDR1_18_C05.g1_A015 Loblolly pine r... 58 6e-007
gb|CF400045.1|CF400045 RTWW1_2_H03.g1_A015 Well-watered lob... 58 6e-007
gb|CF400116.1|CF400116 RTWW1_3_C08.b1_A015 Well-watered lob... 56 2e-006
gb|CF668926.1|CF668926 RTCNT1_39_B08.g1_A029 Root control P... 56 2e-006
gb|DR090097.1|DR090097 RTAL1_12_E04.g1_A029 Roots plus adde... 56 2e-006
dbj|BD236776.1| Materials and method for modification of pl... 56 2e-006
gb|CF386077.1|CF386077 RTDR1_8_G11.b1_A015 Loblolly pine ro... 54 9e-006
gb|CF402712.1|CF402712 RTWW1_22_F11.b1_A015 Well-watered lo... 52 4e-005
gb|CX715632.1|CX715632 RTPQ1_35_B05.g1_A032 Roots treated w... 52 4e-005
gb|CF475135.1|CF475135 RTWW2_14_D03.b1_A021 Well-watered lo... 50 1e-004
gb|BF609180.1|BF609180 NXSI_041_C02_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BM367852.1|BM367852 NXLV_059_A03_F NXLV (Nsf Xylem Late ... 46 0.002
gb|CF387333.1|CF387333 RTDR1_12_C10.b1_A015 Loblolly pine r... 46 0.002
gb|CF387785.1|CF387785 RTDR1_18_C05.b1_A015 Loblolly pine r... 46 0.002
gb|CF399954.1|CF399954 RTWW1_2_H03.b1_A015 Well-watered lob... 46 0.002
gb|CF403009.1|CF403009 RTWW1_24_H09.b1_A015 Well-watered lo... 46 0.002
gb|DR079695.1|DR079695 RTFEPL1_17_A03.b1_A029 Roots plus ad... 46 0.002
gb|DT637268.1|DT637268 EST1152199 Normalized pine embryo li... 46 0.002
gb|BX252135.1|BX252135 BX252135 Pinus pinaster differenciat... 44 0.009
gb|BF610378.1|BF610378 NXSI_049_G10_F NXSI (Nsf Xylem Side ... 40 0.13
gb|BM158019.1|BM158019 NXLV_028_E07_F NXLV (Nsf Xylem Late ... 40 0.13
gb|BM158020.1|BM158020 NXLV_028_E08_F NXLV (Nsf Xylem Late ... 40 0.13
gb|BM158069.1|BM158069 NXLV_029_A08_F NXLV (Nsf Xylem Late ... 40 0.13
gb|BQ699848.1|BQ699848 NXRV122_D08_F NXRV (Nsf Xylem Root w... 40 0.13
gb|DR080009.1|DR080009 RTFEPL1_19_B01.g1_A029 Roots plus ad... 40 0.13
gb|DR161822.1|DR161822 RTFE1_14_D06.b1_A029 Roots minus iro... 40 0.13
>gb|CF476704.1|CF476704 RTWW3_3_B12.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_3_B12_A022 3', mRNA sequence
Length = 670
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 256 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 197
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 196 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 137
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 136 tggttaaatgggtacctcacgcccag 111
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 403 gtgcagtaattgtagatggtgtag 380
>gb|CF479386.1|CF479386 RTWW3_23_D10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_23_D10_A022 5', mRNA sequence
Length = 719
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 713 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 654
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 653 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 594
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 593 tggttaaatgggtacctcacgcccag 568
>gb|CF667790.1|CF667790 RTCNT1_32_B11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_B11_A029 5', mRNA sequence
Length = 805
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 697 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 638
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 637 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 578
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 577 tggttaaatgggtacctcacgcccag 552
>gb|CF673140.1|CF673140 RTCNT1_76_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_76_H09_A029 3', mRNA sequence
Length = 586
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 235 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 176
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 175 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 116
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 115 tggttaaatgggtacctcacgcccag 90
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 382 gtgcagtaattgtagatggtgtag 359
>gb|CF673205.1|CF673205 RTCNT1_76_H09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_76_H09_A029 5', mRNA sequence
Length = 671
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 633 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 574
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 573 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 514
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 513 tggttaaatgggtacctcacgcccag 488
>gb|CO361933.1|CO361933 NDL2_8_B10.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_B10_A029 3', mRNA sequence
Length = 782
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 74 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 133
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 134 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 193
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 194 tggttaaatgggtacctcacgcccag 219
>gb|CO362008.1|CO362008 NDL2_8_B10.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_B10_A029 5', mRNA sequence
Length = 788
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 316 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 375
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 376 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 435
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 436 tggttaaatgggtacctcacgcccag 461
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 169 gtgcagtaattgtagatggtgtag 192
>gb|DR023146.1|DR023146 STRS1_55_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_F06_A034 5', mRNA sequence
Length = 750
Score = 99.6 bits (50), Expect = 2e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 349 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtccgttttctcc 408
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 409 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 468
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 469 tggttaaatgggtacctcacgcccag 494
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 202 gtgcagtaattgtagatggtgtag 225
>gb|CF387264.1|CF387264 RTDR1_11_H07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_H07_A015 5', mRNA
sequence
Length = 704
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 664 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 605
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 604 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 545
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 544 tggttaaatgggtacctcacgcccag 519
>gb|CF400128.1|CF400128 RTWW1_3_C08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_C08_A015 5', mRNA sequence
Length = 762
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 451 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 510
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 511 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 570
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 571 tggttaaatgggtacctcacgcccag 596
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 304 gtgcagtaattgtagatggtgtag 327
>gb|CF400432.1|CF400432 RTWW1_5_B03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_B03_A015 5', mRNA sequence
Length = 803
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 550 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 491
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 490 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 431
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 430 tggttaaatgggtacctcacgcccag 405
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 697 gtgcagtaattgtagatggtgtag 674
>gb|CF401695.1|CF401695 RTWW1_14_C10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C10_A015 5', mRNA sequence
Length = 717
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 395 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 336
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 335 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 276
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 275 tggttaaatgggtacctcacgcccag 250
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 542 gtgcagtaattgtagatggtgtag 519
>gb|CF402748.1|CF402748 RTWW1_22_F11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_F11_A015 5', mRNA sequence
Length = 733
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 695 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 636
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 635 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 576
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 575 tggttaaatgggtacctcacgcccag 550
>gb|CF475177.1|CF475177 RTWW2_14_D03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_D03_A021 5', mRNA sequence
Length = 596
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 268 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 209
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 208 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 149
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 148 tggttaaatgggtacctcacgcccag 123
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 415 gtgcagtaattgtagatggtgtag 392
>gb|CF664045.1|CF664045 RTCNT1_7_A06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_7_A06_A029 3', mRNA sequence
Length = 692
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 157 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 98
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 97 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 38
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 37 tggttaaatgggtacctcacgcccag 12
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 304 gtgcagtaattgtagatggtgtag 281
>gb|CF664119.1|CF664119 RTCNT1_7_A06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_7_A06_A029 5', mRNA sequence
Length = 442
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 199 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 140
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 139 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 80
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 79 tggttaaatgggtacctcacgcccag 54
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 346 gtgcagtaattgtagatggtgtag 323
>gb|CO363007.1|CO363007 RTK1_7_C06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_C06_A029 3', mRNA sequence
Length = 746
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 337 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 278
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 277 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 218
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 217 tggttaaatgggtacctcacgcccag 192
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 484 gtgcagtaattgtagatggtgtag 461
>gb|CO363086.1|CO363086 RTK1_7_C06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_C06_A029 5', mRNA sequence
Length = 743
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 696 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 637
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 636 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 577
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 576 tggttaaatgggtacctcacgcccag 551
>gb|DR014413.1|DR014413 HEAT1_49_G08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_49_G08_A029 3', mRNA sequence
Length = 798
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 380 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 321
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 320 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 261
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 260 tggttaaatgggtacctcacgcccag 235
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 527 gtgcagtaattgtagatggtgtag 504
>gb|DR014494.1|DR014494 HEAT1_49_G08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_49_G08_A029 5', mRNA sequence
Length = 947
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 717 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 658
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 657 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 598
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 597 tggttaaatgggtacctcacgcccag 572
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 864 gtgcagtaattgtagatggtgtag 841
>gb|DR080673.1|DR080673 RTFEPL1_24_H08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_24_H08_A029 3', mRNA sequence
Length = 755
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 146 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 205
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 206 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 265
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 266 tggttaaatgggtacctcacgcccag 291
>gb|DR744308.1|DR744308 RTCU1_21_D04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D04_A029 5', mRNA sequence
Length = 834
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 401 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 460
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 461 agaccccctcgggtagcccagtcatcagcattccacaggctcgaatagatcttcatcggc 520
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 521 tggttaaatgggtacctcacgcccag 546
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 254 gtgcagtaattgtagatggtgtag 277
>dbj|BD236689.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 370
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 314 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 255
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 254 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 195
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 194 tggttaaatgggtacctcacgcccag 169
>dbj|BD236724.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 283
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 270 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 211
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 210 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 151
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 150 tggttaaatgggtacctcacgcccag 125
>dbj|BD236726.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 316
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 269 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 210
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 209 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 150
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 149 tggttaaatgggtacctcacgcccag 124
>dbj|BD236758.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 434
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 168 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 109
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 108 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 49
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 48 tggttaaatgggtacctcacgcccag 23
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 315 gtgcagtaattgtagatggtgtag 292
>dbj|BD236765.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 376
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 367 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 308
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 307 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 248
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 247 tggttaaatgggtacctcacgcccag 222
>gb|BX254013.1|BX254013 BX254013 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092B10, mRNA sequence
Length = 652
Score = 89.7 bits (45), Expect = 2e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 544 gaggcctcgcagccgtcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggac 603
|||||||| ||| | ||||||||||| | | ||||||||||| ||||||||| |||| |
Sbjct: 286 gaggcctcacaggcatcgacgtggaattccctgtaggaggcgatgaagggcgccttggcc 227
Query: 604 cagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggag 663
||||| || ||||| | || || ||||| |||||||| || || ||||||||||| ||
Sbjct: 226 cagtcggttttctcaagaccccctcgggtggcccagtcatcagcattccacaggctcgaa 167
Query: 664 tagagcttcatcggctggctgaacgggtaccgcacgcccag 704
|| | ||||||||||||| | || ||||||| |||||||||
Sbjct: 166 tatatcttcatcggctggttaaatgggtacctcacgcccag 126
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 418 gtgcagtaattgtagatggtgtag 395
>gb|BF778402.1|BF778402 NXSI_082_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_082_H01 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 431
Score = 83.8 bits (42), Expect = 1e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||| ||||||| ||||||||| |||| |||||| || |||||
Sbjct: 274 tcgacgtggaattccctgtaagaggcgatgaagggcgccttggcccagtcggttttctcc 215
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
|||| || ||||| ||||| || || || ||||||||||| || |||| ||||||||||
Sbjct: 214 agcccccctcgggtggcccaatcatcagcattccacaggctcgaatagatcttcatcggc 155
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 154 tggttaaatgggtacctcacgcccag 129
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 421 gtgcagtaattgtagatggtgtag 398
>gb|BQ701367.1|BQ701367 NXSI_063_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_063_D03 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 334
Score = 83.8 bits (42), Expect = 1e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||| ||||||| ||||||||| |||| |||||| || |||||
Sbjct: 274 tcgacgtggaattccctgtaagaggcgatgaagggcgccttggcccagtcggttttctcc 215
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
|||| || ||||| ||||| || || || ||||||||||| || |||| ||||||||||
Sbjct: 214 agcccccctcgggtggcccaatcatcagcattccacaggctcgaatagatcttcatcggc 155
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 154 tggttaaatgggtacctcacgcccag 129
>gb|BQ702509.1|BQ702509 NXSI_129_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_D10 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 525
Score = 83.8 bits (42), Expect = 1e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||| ||||||| ||||||||| |||| |||||| || |||||
Sbjct: 274 tcgacgtggaattccctgtaagaggcgatgaagggcgccttggcccagtcggttttctcc 215
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
|||| || ||||| ||||| || || || ||||||||||| || |||| ||||||||||
Sbjct: 214 agcccccctcgggtggcccaatcatcagcattccacaggctcgaatagatcttcatcggc 155
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 154 tggttaaatgggtacctcacgcccag 129
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 421 gtgcagtaattgtagatggtgtag 398
>gb|BE187307.1|BE187307 NXNV_162_C11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_C11 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 375
Score = 79.8 bits (40), Expect = 2e-013
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 583 gcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcg 642
|||| |||||||| |||| |||||| || ||||| | || || ||||| ||||||||
Sbjct: 298 gcgatgaagggcgnnttggcccagtcggttttctccagaccccctcgggtagcccagtca 239
Query: 643 tcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgccc 702
|| |||||||||||||| || |||| ||||||||||||| | || ||||||| |||||||
Sbjct: 238 tcagcgttccacaggctcgaatagatcttcatcggctggttaaatgggtacctcacgccc 179
Query: 703 ag 704
||
Sbjct: 178 ag 177
>dbj|BD236738.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 234
Score = 77.8 bits (39), Expect = 6e-013
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | ||||||||||| ||||||||| |||| |||||| || |||||
Sbjct: 133 tcgacgtggaattccctgtaggaggcgatgaagggcgccttggcccagtcggttttctcc 74
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 73 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 14
Query: 679 tgg 681
|||
Sbjct: 13 tgg 11
>gb|AW290172.1|AW290172 NXNV015B09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015B09 5', mRNA sequence
Length = 402
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 240 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 181
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 180 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 121
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 120 tggttaaatgggtacctcacgcccag 95
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 387 gtgcagtaattgtagatggtgtag 364
>gb|BE241387.1|BE241387 NXNV_187_F06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_187_F06 5' similar to Arabidopsis thaliana
sequence At2g06850 putative endoxyloglucan
glycosyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 490
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 161 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 102
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 101 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 42
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 41 tggttaaatgggtacctcacgcccag 16
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 308 gtgcagtaattgtagatggtgtag 285
>gb|BE241400.1|BE241400 NXNV_187_H07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_187_H07 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 335
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 161 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 102
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 101 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 42
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 41 tggttaaatgggtacctcacgcccag 16
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 308 gtgcagtaattgtagatggtgtag 285
>gb|CD026837.1|CD026837 NXNV015B09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015B09 5' similar to Arabidopsis thaliana sequence
At5g13870 endoxyloglucan transferase (dbj|BAA81669.1)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 402
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 240 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 181
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 180 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 121
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 120 tggttaaatgggtacctcacgcccag 95
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 387 gtgcagtaattgtagatggtgtag 364
>gb|CF477400.1|CF477400 RTWW3_7_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_7_E06_A022 5', mRNA sequence
Length = 655
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 616 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 557
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 556 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 497
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 496 tggttaaatgggtacctcacgcccag 471
>gb|CO201770.1|CO201770 RTCNT2_8_B11.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_8_B11_A029 3', mRNA sequence
Length = 880
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 300 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 359
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 360 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 419
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 420 tggttaaatgggtacctcacgcccag 445
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 153 gtgcagtaattgtagatggtgtag 176
>gb|CO201845.1|CO201845 RTCNT2_8_B11.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_8_B11_A029 5', mRNA sequence
Length = 734
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Plus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 352 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 411
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 412 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 471
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 472 tggttaaatgggtacctcacgcccag 497
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 205 gtgcagtaattgtagatggtgtag 228
>gb|CO367098.1|CO367098 RTK1_32_D07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_D07_A029 3', mRNA sequence
Length = 811
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 472 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 413
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 412 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 353
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 352 tggttaaatgggtacctcacgcccag 327
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 619 gtgcagtaattgtagatggtgtag 596
>gb|CO367170.1|CO367170 RTK1_32_D07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_D07_A029 5', mRNA sequence
Length = 821
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 675 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 616
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 615 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 556
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 555 tggttaaatgggtacctcacgcccag 530
>gb|CX714485.1|CX714485 RTPQ1_22_F11.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_22_F11_A032 5', mRNA sequence
Length = 786
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 711 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 652
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 651 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 592
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 591 tggttaaatgggtacctcacgcccag 566
>gb|CX715566.1|CX715566 RTPQ1_35_B05.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_B05_A032 3', mRNA sequence
Length = 605
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 260 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 201
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 200 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 141
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 140 tggttaaatgggtacctcacgcccag 115
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 407 gtgcagtaattgtagatggtgtag 384
>gb|DR090010.1|DR090010 RTAL1_12_E04.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_E04_A029 3', mRNA sequence
Length = 714
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 376 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 317
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 316 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 257
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 256 tggttaaatgggtacctcacgcccag 231
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 523 gtgcagtaattgtagatggtgtag 500
>gb|DR160998.1|DR160998 RTFE1_9_F01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_F01_A029 3', mRNA sequence
Length = 727
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 380 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 321
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 320 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 261
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 260 tggttaaatgggtacctcacgcccag 235
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 412 gtgcagtagttgtagatggtgtag 435
|||||||| |||||||||||||||
Sbjct: 527 gtgcagtaattgtagatggtgtag 504
>gb|DR161081.1|DR161081 RTFE1_9_F01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_F01_A029 5', mRNA sequence
Length = 728
Score = 75.8 bits (38), Expect = 2e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 559 tcgacgtggaagccgcggtaggaggcgacgaagggcgcgttggaccagtccgtcttctcg 618
||||||||||| | | |||||| |||| ||||||||| || | |||||| || |||||
Sbjct: 690 tcgacgtggaattccctgtaggaagcgatgaagggcgccttagcccagtcggttttctcc 631
Query: 619 cgcccgccgcgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggc 678
| || || ||||| |||||||| || || ||||||||||| || |||| ||||||||||
Sbjct: 630 agaccccctcgggtggcccagtcatcagcattccacaggctcgaatagatcttcatcggc 571
Query: 679 tggctgaacgggtaccgcacgcccag 704
||| | || ||||||| |||||||||
Sbjct: 570 tggttaaatgggtacctcacgcccag 545
>gb|BF516630.1|BF516630 NXSI_001_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_001_C11 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 73.8 bits (37), Expect = 1e-011
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 628 cgggtcgcccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaac 687
||||| |||||||| || |||||||||||||| || |||| ||||||||||||| | ||
Sbjct: 377 cgggtagcccagtcatcagcgttccacaggctcgaatagatcttcatcggctggttaaat 318
Query: 688 gggtaccgcacgcccag 704
||||||| |||||||||
Sbjct: 317 gggtacctcacgcccag 301
>gb|CF400467.1|CF400467 RTWW1_5_D01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_D01_A015 5', mRNA sequence
Length = 675
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 588 gaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgcccagtcgtcggc 647
||||||||| |||| |||||| || ||||| | || || ||||| |||||||| || ||
Sbjct: 671 gaagggcgccttggcccagtcggttttctccagaccccctcgggtagcccagtcatcagc 612
Query: 648 gttccacaggctggagtagagcttcatcggctggctgaacgggtaccgcacgcccag 704
||||||||||| || |||| ||||||||||||| | || ||||||| |||||||||
Sbjct: 611 attccacaggctcgaatagatcttcatcggctggttaaatgggtacctcacgcccag 555
>gb|CO364357.1|CO364357 RTK1_15_F06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_F06_A029 3', mRNA sequence
Length = 780
Score = 71.9 bits (36), Expect = 4e-011
Identities = 108/132 (81%)
Strand = Plus / Plus
Query: 576 gtaggaggcgacgaagggcgcgttggaccagtccgtcttctcgcgcccgccgcgggtcgc 635
||||||||||| ||||||||| ||| ||| || || ||||| | || || ||||| ||
Sbjct: 57 gtaggaggcgaggaagggcgccttgctccaatcggttttctccagaccccctcgggtggc 116
Query: 636 ccagtcgtcggcgttccacaggctggagtagagcttcatcggctggctgaacgggtaccg 695
|||||| || || ||||||||||| || || ||||||||||| ||| |||| |||||||
Sbjct: 117 ccagtcatctgcattccacaggctcgaatacagcttcatcggttggttgaatgggtacct 176
Query: 696 cacgcccaggtc 707
||| ||||||||
Sbjct: 177 cacccccaggtc 188
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,926
Number of Sequences: 355925
Number of extensions: 58926
Number of successful extensions: 15453
Number of sequences better than 0.5: 106
Number of HSP's better than 0.5 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15195
Number of HSP's gapped (non-prelim): 243
length of query: 786
length of database: 217,277,237
effective HSP length: 19
effective length of query: 767
effective length of database: 210,514,662
effective search space: 161464745754
effective search space used: 161464745754
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)