BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591131.2.1
         (596 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF386668.1|CF386668  RTDR1_16_C08.b1_A015 Loblolly pine r...    44   0.006
gb|CF386766.1|CF386766  RTDR1_16_C08.g1_A015 Loblolly pine r...    44   0.006
gb|CF400511.1|CF400511  RTWW1_6_B06.b1_A015 Well-watered lob...    44   0.006
gb|CF400637.1|CF400637  RTWW1_6_B06.g1_A015 Well-watered lob...    44   0.006
gb|CF402042.1|CF402042  RTWW1_16_F09.g1_A015 Well-watered lo...    44   0.006
gb|CO197560.1|CO197560  GEO1_7_H02.b1_A029 Root gravitropism...    44   0.006
gb|CF666895.1|CF666895  RTCNT1_26_G11.g1_A029 Root control P...    40   0.10 
gb|CO171240.1|CO171240  NDL1_20_C09.b1_A029 Needles control ...    40   0.10 
gb|CO171305.1|CO171305  NDL1_20_C09.g1_A029 Needles control ...    40   0.10 
gb|DR168662.1|DR168662  RTPHOS1_27_B09.b1_A029 Roots minus p...    40   0.10 
gb|CF401946.1|CF401946  RTWW1_16_F09.b1_A015 Well-watered lo...    38   0.40 
>gb|CF386668.1|CF386668 RTDR1_16_C08.b1_A015 Loblolly pine roots recovering from drought
           DR1 Pinus taeda cDNA clone RTDR1_16_C08_A015 3', mRNA
           sequence
          Length = 596

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 317 actgccagttctggccccagttccgc 342
           ||||||||||||| ||||||||||||
Sbjct: 252 actgccagttctgtccccagttccgc 227
>gb|CF386766.1|CF386766 RTDR1_16_C08.g1_A015 Loblolly pine roots recovering from drought
           DR1 Pinus taeda cDNA clone RTDR1_16_C08_A015 5', mRNA
           sequence
          Length = 774

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 317 actgccagttctggccccagttccgc 342
           ||||||||||||| ||||||||||||
Sbjct: 670 actgccagttctgtccccagttccgc 645
>gb|CF400511.1|CF400511 RTWW1_6_B06.b1_A015 Well-watered loblolly pine roots WW1 Pinus
           taeda cDNA clone RTWW1_6_B06_A015 3', mRNA sequence
          Length = 535

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 317 actgccagttctggccccagttccgc 342
           ||||||||||||| ||||||||||||
Sbjct: 189 actgccagttctgtccccagttccgc 164
>gb|CF400637.1|CF400637 RTWW1_6_B06.g1_A015 Well-watered loblolly pine roots WW1 Pinus
           taeda cDNA clone RTWW1_6_B06_A015 5', mRNA sequence
          Length = 761

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 317 actgccagttctggccccagttccgc 342
           ||||||||||||| ||||||||||||
Sbjct: 657 actgccagttctgtccccagttccgc 632
>gb|CF402042.1|CF402042 RTWW1_16_F09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
           taeda cDNA clone RTWW1_16_F09_A015 5', mRNA sequence
          Length = 753

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 319 tgccagttctggccccagttccgccccatcgggatccaccccgtcctcgagcccttcacc 378
           ||||||||||| ||||||||||| | ||  || | |||||| ||  |||| |||||||||
Sbjct: 650 tgccagttctgcccccagttccggctcagaggcagccacccagtattcgaccccttcacc 591

                 
Query: 379 ttcacg 384
           ||||||
Sbjct: 590 ttcacg 585
>gb|CO197560.1|CO197560 GEO1_7_H02.b1_A029 Root gravitropism April 2003 test Pinus taeda
           cDNA clone GEO1_7_H02_A029 3', mRNA sequence
          Length = 445

 Score = 44.1 bits (22), Expect = 0.006
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 317 actgccagttctggccccagttccgc 342
           ||||||||||||| ||||||||||||
Sbjct: 99  actgccagttctgtccccagttccgc 74
>gb|CF666895.1|CF666895 RTCNT1_26_G11.g1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_26_G11_A029 5', mRNA sequence
          Length = 779

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 actgccagttctggccccagttcc 340
           ||||||||||||| ||||||||||
Sbjct: 667 actgccagttctgtccccagttcc 644
>gb|CO171240.1|CO171240 NDL1_20_C09.b1_A029 Needles control Pinus taeda cDNA clone
           NDL1_20_C09_A029 3', mRNA sequence
          Length = 606

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 actgccagttctggccccagttcc 340
           ||||||||||||| ||||||||||
Sbjct: 212 actgccagttctgtccccagttcc 189
>gb|CO171305.1|CO171305 NDL1_20_C09.g1_A029 Needles control Pinus taeda cDNA clone
           NDL1_20_C09_A029 5', mRNA sequence
          Length = 776

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 actgccagttctggccccagttcc 340
           ||||||||||||| ||||||||||
Sbjct: 664 actgccagttctgtccccagttcc 641
>gb|DR168662.1|DR168662 RTPHOS1_27_B09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
           clone RTPHOS1_27_B09_A029 3', mRNA sequence
          Length = 781

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 actgccagttctggccccagttcc 340
           ||||||||||||| ||||||||||
Sbjct: 417 actgccagttctgtccccagttcc 394
>gb|CF401946.1|CF401946 RTWW1_16_F09.b1_A015 Well-watered loblolly pine roots WW1 Pinus
           taeda cDNA clone RTWW1_16_F09_A015 3', mRNA sequence
          Length = 542

 Score = 38.2 bits (19), Expect = 0.40
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 319 tgccagttctggccccagttccg 341
           ||||||||||| |||||||||||
Sbjct: 104 tgccagttctgcccccagttccg 82
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,622
Number of Sequences: 355925
Number of extensions: 45622
Number of successful extensions: 11013
Number of sequences better than  0.5: 11
Number of HSP's better than  0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10995
Number of HSP's gapped (non-prelim): 17
length of query: 596
length of database: 217,277,237
effective HSP length: 19
effective length of query: 577
effective length of database: 210,514,662
effective search space: 121466959974
effective search space used: 121466959974
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)