BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591032.2.1
(735 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pin... 60 1e-007
gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus... 60 1e-007
gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response R... 60 1e-007
gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iro... 60 1e-007
gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iro... 60 1e-007
gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus adde... 52 3e-005
gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added... 46 0.002
gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added... 46 0.002
gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magn... 46 0.002
gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch... 44 0.008
gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus ni... 44 0.008
gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch... 42 0.031
gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus ni... 42 0.031
gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered lo... 38 0.49
>gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_E10_A029 5', mRNA sequence
Length = 882
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 571 cccttgaaaggcgtcttcccgaacagcagctcgtacaagaataccccgaaggtccaccag 630
|||||||| || ||| ||||| | ||||||||||| || || | ||| || |||||||||
Sbjct: 541 cccttgaacggtgtcgtcccgtaaagcagctcgtataaaaagatcccaaatgtccaccag 600
Query: 631 tcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgtc 690
|| || || || |||||||||| |||||||| || || || |||| ||||||||| ||
Sbjct: 601 tcaacagcactcccatggccctgccctttgattatttcaggagccaagtactcgtgagtg 660
Query: 691 ccaacgaacgacat 704
|| || ||||||||
Sbjct: 661 cccacaaacgacat 674
>gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B10_A029 5', mRNA sequence
Length = 781
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 571 cccttgaaaggcgtcttcccgaacagcagctcgtacaagaataccccgaaggtccaccag 630
|||||||| || ||| ||||| | ||||||||||| || || | ||| || |||||||||
Sbjct: 453 cccttgaacggtgtcgtcccgtaaagcagctcgtataaaaagatcccaaatgtccaccag 512
Query: 631 tcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgtc 690
|| || || || |||||||||| |||||||| || || || |||| ||||||||| ||
Sbjct: 513 tcaacagcactcccatggccctgccctttgattatttcaggagccaagtactcgtgagtg 572
Query: 691 ccaacgaacgacat 704
|| || ||||||||
Sbjct: 573 cccacaaacgacat 586
>gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_B08_A033 3', mRNA sequence
Length = 843
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 571 cccttgaaaggcgtcttcccgaacagcagctcgtacaagaataccccgaaggtccaccag 630
|||||||| || ||| ||||| | ||||||||||| || || | ||| || |||||||||
Sbjct: 406 cccttgaacggtgtcgtcccgtaaagcagctcgtataaaaagatcccaaatgtccaccag 347
Query: 631 tcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgtc 690
|| || || || |||||||||| |||||||| || || || |||| ||||||||| ||
Sbjct: 346 tcaacagcactcccatggccctgccctttgattatttcaggagccaagtactcgtgagtg 287
Query: 691 ccaacgaacgacat 704
|| || ||||||||
Sbjct: 286 cccacaaacgacat 273
>gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 3', mRNA sequence
Length = 774
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 571 cccttgaaaggcgtcttcccgaacagcagctcgtacaagaataccccgaaggtccaccag 630
|||||||| || ||| ||||| | ||||||||||| || || | ||| || |||||||||
Sbjct: 226 cccttgaacggtgtcgtcccgtaaagcagctcgtataaaaagatcccaaatgtccaccag 167
Query: 631 tcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgtc 690
|| || || || |||||||||| |||||||| || || || |||| ||||||||| ||
Sbjct: 166 tcaacagcactcccatggccctgccctttgattatttcaggagccaagtactcgtgagtg 107
Query: 691 ccaacgaacgacat 704
|| || ||||||||
Sbjct: 106 cccacaaacgacat 93
>gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 5', mRNA sequence
Length = 871
Score = 60.0 bits (30), Expect = 1e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 571 cccttgaaaggcgtcttcccgaacagcagctcgtacaagaataccccgaaggtccaccag 630
|||||||| || ||| ||||| | ||||||||||| || || | ||| || |||||||||
Sbjct: 363 cccttgaacggtgtcgtcccgtaaagcagctcgtataaaaagatcccaaatgtccaccag 304
Query: 631 tcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggtactcgtgcgtc 690
|| || || || |||||||||| |||||||| || || || |||| ||||||||| ||
Sbjct: 303 tcaacagcactcccatggccctgccctttgattatttcaggagccaagtactcgtgagtg 244
Query: 691 ccaacgaacgacat 704
|| || ||||||||
Sbjct: 243 cccacaaacgacat 230
>gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_5_C10_A029 5', mRNA sequence
Length = 787
Score = 52.0 bits (26), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 595 agcagctcgtacaagaataccccgaaggtccaccagtcgacggcgctgccatggccctcg 654
||||||||||| || || | ||| || ||||||||||| || || || ||||||||||
Sbjct: 453 agcagctcgtataaaaagatcccaaatgtccaccagtcaacagcactcccatggccctgc 512
Query: 655 cctttgatgatctcgggggccaggtactcgtgcgtcccaacgaacgacat 704
|||||||| || || || |||| ||||||||| || || || ||||||||
Sbjct: 513 cctttgattatttcaggagccaagtactcgtgagtgcccacaaacgacat 562
>gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 3', mRNA sequence
Length = 762
Score = 46.1 bits (23), Expect = 0.002
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 391 ccctcaaagaagggatgctgcttgatctccgtggctccacgcttgtaggccagccgttgc 450
||||||||||| || || || ||||| ||||| || ||||||||| | |||| || ||
Sbjct: 262 ccctcaaagaaagggtgttgtttgatttccgttgccccacgcttgaatgccaatcggtgt 203
Query: 451 tggggctccttcacaagcagacccctgatca 481
|| ||||| || ||||||| |||||||||||
Sbjct: 202 tgtggctcttttacaagcaaacccctgatca 172
>gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 5', mRNA sequence
Length = 853
Score = 46.1 bits (23), Expect = 0.002
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 391 ccctcaaagaagggatgctgcttgatctccgtggctccacgcttgtaggccagccgttgc 450
||||||||||| || || || ||||| ||||| || ||||||||| | |||| || ||
Sbjct: 486 ccctcaaagaaagggtgttgtttgatttccgttgccccacgcttgaatgccaatcggtgt 427
Query: 451 tggggctccttcacaagcagacccctgatca 481
|| ||||| || ||||||| |||||||||||
Sbjct: 426 tgtggctcttttacaagcaaacccctgatca 396
>gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_F10_A029 5', mRNA sequence
Length = 831
Score = 46.1 bits (23), Expect = 0.002
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 391 ccctcaaagaagggatgctgcttgatctccgtggctccacgcttgtaggccagccgttgc 450
||||||||||| || || || ||||| ||||| || ||||||||| | |||| || ||
Sbjct: 793 ccctcaaagaaagggtgttgtttgatttccgttgccccacgcttgaatgccaatcggtgt 734
Query: 451 tggggctccttcacaagcagacccctgatca 481
|| ||||| || ||||||| |||||||||||
Sbjct: 733 tgtggctcttttacaagcaaacccctgatca 703
>gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_B12_A034 5', mRNA sequence
Length = 835
Score = 44.1 bits (22), Expect = 0.008
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 379 gcccaattcacgccctcaaagaagggatgctgcttgatctccgtggctccacgcttgtag 438
||||| ||||| |||||||| || || || || ||||| || ||||| |||||||||||
Sbjct: 651 gcccagttcacaccctcaaaaaaagggtgttgtttgatttcagtggcaccacgcttgtat 592
Query: 439 gccagccgttgctggggctccttcacaagcagacccctgatcagatccct 488
|| | || || || ||||| |||||||| | |||||| |||| ||||||
Sbjct: 591 gctaatcgatgttgtggctctttcacaagtaaacccctaatcaaatccct 542
>gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 3', mRNA sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.008
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 379 gcccaattcacgccctcaaagaagggatgctgcttgatctccgtggctccacgcttgtag 438
||||| ||||| ||||||||||| || || || ||||| || ||||| || ||||||||
Sbjct: 244 gcccagttcacaccctcaaagaaagggtgttgtttgatttcagtggcaccgcgcttgtat 185
Query: 439 gccagccgttgctggggctccttcacaagcagacccctgatcagatccct 488
|| | || || || ||||| |||||||| | |||||| |||| ||||||
Sbjct: 184 gctaatcgatgttgtggctctttcacaagtaaacccctaatcaaatccct 135
>gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_H09_A034 3', mRNA sequence
Length = 838
Score = 42.1 bits (21), Expect = 0.031
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 379 gcccaattcacgccctcaaagaagggatgctgcttgatctccgtggctccacgcttg 435
|||||||| || ||||||||||| || ||||| ||||| || || ||||| ||||||
Sbjct: 360 gcccaatttacaccctcaaagaaagggtgctgtttgatttcagttgctcctcgcttg 304
>gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 5', mRNA sequence
Length = 730
Score = 42.1 bits (21), Expect = 0.031
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 379 gcccaattcacgccctcaaagaagggatgctgcttgatctccgtggctccacgcttg 435
|||||||| || ||||||||||| || ||||| ||||| || || ||||| ||||||
Sbjct: 270 gcccaatttacaccctcaaagaaagggtgctgtttgatttcagttgctcctcgcttg 326
>gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_E11_A015 5', mRNA sequence
Length = 783
Score = 38.2 bits (19), Expect = 0.49
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 622 gtccaccagtcgacggcgctgccatggccctcgcctttgatgatctcgggggccaggta 680
||||||||||| ||||||||||| || |||| ||| |||| ||| |||||||||||
Sbjct: 458 gtccaccagtccacggcgctgccgtgacccttgccggaaatgacctccggggccaggta 400
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,511
Number of Sequences: 355925
Number of extensions: 75511
Number of successful extensions: 19442
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19423
Number of HSP's gapped (non-prelim): 19
length of query: 735
length of database: 217,277,237
effective HSP length: 19
effective length of query: 716
effective length of database: 210,514,662
effective search space: 150728497992
effective search space used: 150728497992
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)