BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW981614.1|AW981614 PC14F09 Pine TriplEx pollen cone lib... 117 8e-025
gb|BX252375.1|BX252375 BX252375 Pinus pinaster differenciat... 117 8e-025
gb|BX254088.1|BX254088 BX254088 Pinus pinaster differenciat... 117 8e-025
gb|CF473119.1|CF473119 RTDS1_1_C07.g1_A015 Drought-stressed... 117 8e-025
gb|DN463765.1|DN463765 EST959564 Sequencing ESTs from loblo... 117 8e-025
gb|DT627323.1|DT627323 EST1160399 Sequencing ESTs from lobl... 117 8e-025
gb|CF668112.1|CF668112 RTCNT1_34_A11.g1_A029 Root control P... 109 2e-022
gb|DR110673.1|DR110673 RTS1_12_F08.b1_A029 Roots minus sulf... 109 2e-022
gb|CF473592.1|CF473592 RTWW2_3_A05.g1_A021 Well-watered lob... 101 5e-020
gb|AW043371.1|AW043371 ST32E12 Pine TriplEx shoot tip libra... 98 7e-019
gb|BX680840.1|BX680840 BX680840 RS Pinus pinaster cDNA clon... 98 7e-019
gb|DR113052.1|DR113052 RTS1_32_D10.g1_A029 Roots minus sulf... 98 7e-019
gb|DR681750.1|DR681750 EST1071825 Normalized pine embryo li... 98 7e-019
gb|DR683136.1|DR683136 EST1073212 Normalized pine embryo li... 64 1e-008
gb|DR683137.1|DR683137 EST1073213 Normalized pine embryo li... 64 1e-008
gb|AW438035.1|AW438035 ST83G04 Pine TriplEx shoot tip libra... 56 2e-006
gb|BM367466.1|BM367466 NXLV_049_F07_F NXLV (Nsf Xylem Late ... 56 2e-006
gb|CF389415.1|CF389415 RTDR2_7_A04.b1_A021 Loblolly pine ro... 56 2e-006
gb|CF473518.1|CF473518 RTWW2_3_A05.b2_A021 Well-watered lob... 44 0.009
gb|DR681749.1|DR681749 EST1071824 Normalized pine embryo li... 44 0.009
>gb|AW981614.1|AW981614 PC14F09 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC14F09, mRNA sequence
Length = 598
Score = 117 bits (59), Expect = 8e-025
Identities = 317/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 195 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 254
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| || |||| |
Sbjct: 255 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtctttcatattg 314
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 315 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 374
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 375 gggaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 434
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 435 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 494
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||| ||| | |||||| | ||||| || || || || || |||||| | ||||
Sbjct: 495 catatgttggttgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctga 554
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 555 taggagcattgggtttgctggtaataacgtcgaaagaatagag 597
>gb|BX252375.1|BX252375 BX252375 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E10, mRNA sequence
Length = 690
Score = 117 bits (59), Expect = 8e-025
Identities = 317/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || ||||||||||||||||||||||||||||| |||||
Sbjct: 221 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggcgatatat 280
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| ||| || | |
Sbjct: 281 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtcttccatgttg 340
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 341 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 400
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 401 gtgaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 460
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 461 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 520
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||||||| | |||||| | ||||| || || || || || |||||| | ||||
Sbjct: 521 catatgttggctgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctga 580
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 581 taggagcattgggtttgctggtaataacgtcgaaagaatagag 623
>gb|BX254088.1|BX254088 BX254088 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093B08, mRNA sequence
Length = 674
Score = 117 bits (59), Expect = 8e-025
Identities = 317/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || ||||||||||||||||||||||||||||| |||||
Sbjct: 77 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggcgatatat 136
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| ||| || | |
Sbjct: 137 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtcttccatgttg 196
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 197 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 256
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 257 gtgaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 316
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 317 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 376
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||||||| | |||||| | ||||| || || || || || |||||| | ||||
Sbjct: 377 catatgttggctgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctga 436
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 437 taggagcattgggtttgctggtaataacgtcgaaagaatagag 479
>gb|CF473119.1|CF473119 RTDS1_1_C07.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_C07_A015 5', mRNA sequence
Length = 631
Score = 117 bits (59), Expect = 8e-025
Identities = 317/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 182 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 241
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| || || | |
Sbjct: 242 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtctttcatgttg 301
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 302 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 361
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 362 gggaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 421
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 422 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 481
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||| ||| | |||||| | |||||||| || || || || |||||| | ||||
Sbjct: 482 catatgttggttgggtgacaattcttatgactgaaaagcccttaatcaagtacattctga 541
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 542 taggagcattgggtttgctggtaataacgtcgaaagaatagag 584
>gb|DN463765.1|DN463765 EST959564 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJ295 5' end, mRNA sequence
Length = 804
Score = 117 bits (59), Expect = 8e-025
Identities = 317/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 180 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 239
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| || || | |
Sbjct: 240 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtctttcatgttg 299
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 300 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 359
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 360 gggaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 419
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 420 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 479
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||| ||| | |||||| | |||||||| || || || || |||||| | ||||
Sbjct: 480 catatgttggttgggtgacaattcttatgactgaaaagcccttaatcaagtacattctga 539
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 540 taggagcattgggtttgctggtaataacgtcgaaagaatagag 582
>gb|DT627323.1|DT627323 EST1160399 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAX38 5' end, mRNA sequence
Length = 692
Score = 117 bits (59), Expect = 8e-025
Identities = 317/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 93 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 152
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| || || | |
Sbjct: 153 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtctttcatgttg 212
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 213 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 272
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 273 gggaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 332
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 333 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 392
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||| ||| | |||||| | |||||||| || || || || |||||| | ||||
Sbjct: 393 catatgttggttgggtgacaattcttatgactgaaaagcccttaatcaagtacattctga 452
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 453 taggagcattgggtttgctggtaataacgtcgaaagaatagag 495
>gb|CF668112.1|CF668112 RTCNT1_34_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_34_A11_A029 5', mRNA sequence
Length = 763
Score = 109 bits (55), Expect = 2e-022
Identities = 316/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 172 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 231
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| || || | |
Sbjct: 232 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtctttcatgttg 291
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 292 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 351
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 352 gggaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 411
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 412 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 471
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||| ||| | |||||| | ||||| || || || || || |||||| | ||||
Sbjct: 472 catatgttggttgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctga 531
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 532 taggagcattgggtttgctggtaataacgtcgaaagaatagag 574
>gb|DR110673.1|DR110673 RTS1_12_F08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_F08_A029 3', mRNA sequence
Length = 835
Score = 109 bits (55), Expect = 2e-022
Identities = 316/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 26 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 85
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| || || | |
Sbjct: 86 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtctttcatgttg 145
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 146 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 205
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 206 gggaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 265
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 266 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 325
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||| ||| | |||||| | ||||| || || || || || |||||| | ||||
Sbjct: 326 catatgttggttgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctga 385
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 386 taggagcattgggtttgctggtaataacgtcgaaagaatagag 428
>gb|CF473592.1|CF473592 RTWW2_3_A05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_A05_A021 5', mRNA sequence
Length = 735
Score = 101 bits (51), Expect = 5e-020
Identities = 315/403 (78%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 171 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 230
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| || || | |
Sbjct: 231 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtctttcatgttg 290
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| || |||||||| || || || || || || ||||| |||||||| || || ||||
Sbjct: 291 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacgacaagaaactg 350
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| || || |||| || ||||| || || |||| ||| ||||| | || || ||||
Sbjct: 351 gcgaggttgaagtccttactaaaggggataacaattatggagatgataggcttttgtatg 410
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
| || || ||||| ||||| ||| | ||||| || ||||| || ||||| || | | |
Sbjct: 411 ctcaaggtcagctatggctacagaagcatcatataatgggccgcgctgttgggtttttac 470
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||| ||| | |||||| | ||||| || || || || || |||||| | ||||
Sbjct: 471 catatgttggttgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctga 530
Query: 364 ttggtgcactgggcttgctggtcataacgtcgaaagattagag 406
| || | | |||| |||||||| |||||||||||||| |||||
Sbjct: 531 taggagtattgggtttgctggtaataacgtcgaaagaatagag 573
>gb|AW043371.1|AW043371 ST32E12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32E12, mRNA sequence
Length = 601
Score = 97.6 bits (49), Expect = 7e-019
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 202 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 261
Query: 64 tgtttttgcatatgagcaaag 84
||||| |||||||||| ||||
Sbjct: 262 tgtttctgcatatgagtaaag 282
>gb|BX680840.1|BX680840 BX680840 RS Pinus pinaster cDNA clone RS49D1, mRNA sequence
Length = 567
Score = 97.6 bits (49), Expect = 7e-019
Identities = 139/169 (82%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || ||||||||||||||||||||||||||||| |||||
Sbjct: 194 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggcgatatat 253
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
||||| |||||||||| |||| || ||||| | |||||||| ||||| ||| || | |
Sbjct: 254 tgtttctgcatatgagtaaagcacccattcgtgctggagaaattgttgtcttccatgttg 313
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacg 172
|||| || |||||||| || || || || || || ||||| ||||||||
Sbjct: 314 atggtcgagaaattcctatagttcatcgtgttataaaggtacatgaacg 362
>gb|DR113052.1|DR113052 RTS1_32_D10.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_32_D10_A029 5', mRNA sequence
Length = 309
Score = 97.6 bits (49), Expect = 7e-019
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 160 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 219
Query: 64 tgtttttgcatatgagcaaag 84
||||| |||||||||| ||||
Sbjct: 220 tgtttctgcatatgagtaaag 240
>gb|DR681750.1|DR681750 EST1071825 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA101 3' end, mRNA sequence
Length = 549
Score = 97.6 bits (49), Expect = 7e-019
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct: 201 caccagttgtagttgtgctttcaggtagcatggaacctggatttaaaaggggtgatatat 260
Query: 64 tgtttttgcatatgagcaaag 84
||||| |||||||||| ||||
Sbjct: 261 tgtttctgcatatgagtaaag 281
>gb|DR683136.1|DR683136 EST1073212 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE63, mRNA sequence
Length = 524
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctg 362
||||||||||| ||| | |||||| | |||||||| || || || || |||||| | |||
Sbjct: 283 ccatatgttggttgggtgacaattcttatgactgaaaagcccttaatcaagtacattctg 224
Query: 363 attggtgcactgggcttgctggtcataacgtcgaaagattagag 406
|| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 223 ataggagcattgggtttgctggtaataacgtcgaaagaatagag 180
>gb|DR683137.1|DR683137 EST1073213 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE63 3' end, mRNA sequence
Length = 487
Score = 63.9 bits (32), Expect = 1e-008
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctg 362
||||||||||| ||| | |||||| | |||||||| || || || || |||||| | |||
Sbjct: 155 ccatatgttggttgggtgacaattcttatgactgaaaagcccttaatcaagtacattctg 214
Query: 363 attggtgcactgggcttgctggtcataacgtcgaaagattagag 406
|| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 215 ataggagcattgggtttgctggtaataacgtcgaaagaatagag 258
>gb|AW438035.1|AW438035 ST83G04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST83G04, mRNA sequence
Length = 418
Score = 56.0 bits (28), Expect = 2e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctg 362
||||||||||| ||| | |||||| | ||||| || || || || || |||||| | |||
Sbjct: 97 ccatatgttggttgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctg 156
Query: 363 attggtgcactgggcttgctggtcataacgtcgaaagattagag 406
|| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 157 ataggagcattgggtttgctggtaataacgtcgaaagaatagag 200
>gb|BM367466.1|BM367466 NXLV_049_F07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_049_F07 5' similar to Arabidopsis thaliana
sequence At1g52600 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 425
Score = 56.0 bits (28), Expect = 2e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctg 362
||||||||||| ||| | |||||| | ||||| || || || || || |||||| | |||
Sbjct: 99 ccatatgttggttgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctg 158
Query: 363 attggtgcactgggcttgctggtcataacgtcgaaagattagag 406
|| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 159 ataggagcattgggtttgctggtaataacgtcgaaagaatagag 202
>gb|CF389415.1|CF389415 RTDR2_7_A04.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_A04_A021 3', mRNA
sequence
Length = 666
Score = 56.0 bits (28), Expect = 2e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctg 362
||||||||||| ||| | |||||| | ||||| || || || || || |||||| | |||
Sbjct: 227 ccatatgttggttgggtgacaattcttatgaccgaaaagcccttaatcaagtacattctg 286
Query: 363 attggtgcactgggcttgctggtcataacgtcgaaagattagag 406
|| || ||| |||| |||||||| |||||||||||||| |||||
Sbjct: 287 ataggagcattgggtttgctggtaataacgtcgaaagaatagag 330
>gb|CF473518.1|CF473518 RTWW2_3_A05.b2_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_A05_A021 3', mRNA sequence
Length = 642
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 373 tgggcttgctggtcataacgtcgaaagattagag 406
|||| |||||||| |||||||||||||| |||||
Sbjct: 17 tgggtttgctggtaataacgtcgaaagaatagag 50
>gb|DR681749.1|DR681749 EST1071824 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA101, mRNA sequence
Length = 97
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 373 tgggcttgctggtcataacgtcgaaagattagag 406
|||| |||||||| |||||||||||||| |||||
Sbjct: 89 tgggtttgctggtaataacgtcgaaagaatagag 56
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,442
Number of Sequences: 355925
Number of extensions: 98442
Number of successful extensions: 27866
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27835
Number of HSP's gapped (non-prelim): 31
length of query: 870
length of database: 217,277,237
effective HSP length: 19
effective length of query: 851
effective length of database: 210,514,662
effective search space: 179147977362
effective search space used: 179147977362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)