BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542097.2.1
(887 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX252765.1|BX252765 BX252765 Pinus pinaster differenciat... 56 3e-006
gb|BX254590.1|BX254590 BX254590 Pinus pinaster differenciat... 56 3e-006
gb|CF392359.1|CF392359 RTDR3_7_A08.g1_A022 Loblolly pine ro... 56 3e-006
gb|DN463075.1|DN463075 EST958874 Sequencing ESTs from loblo... 56 3e-006
gb|DR071572.1|DR071572 RTDK1_20_F05.g1_A029 Roots, dark Pin... 56 3e-006
gb|CN784170.1|CN784170 EST782861 Sequencing ESTs from loblo... 52 4e-005
gb|CN784233.1|CN784233 EST782924 Sequencing ESTs from loblo... 52 4e-005
gb|CO410453.1|CO410453 EST840838 Sequencing ESTs from loblo... 52 4e-005
gb|CO411472.1|CO411472 EST841857 Sequencing ESTs from loblo... 52 4e-005
gb|CV144315.1|CV144315 EST855524 Sequencing ESTs from loblo... 52 4e-005
gb|DN460103.1|DN460103 EST955902 Sequencing ESTs from loblo... 52 4e-005
gb|DN460247.1|DN460247 EST956046 Sequencing ESTs from loblo... 52 4e-005
gb|DN462568.1|DN462568 EST958367 Sequencing ESTs from loblo... 52 4e-005
gb|DN463442.1|DN463442 EST959241 Sequencing ESTs from loblo... 52 4e-005
gb|DN463525.1|DN463525 EST959324 Sequencing ESTs from loblo... 52 4e-005
gb|DN463571.1|DN463571 EST959370 Sequencing ESTs from loblo... 52 4e-005
gb|DR742490.1|DR742490 RTCU1_4_H03.b1_A029 Roots plus added... 52 4e-005
gb|DT627405.1|DT627405 EST1160481 Sequencing ESTs from lobl... 52 4e-005
gb|BX680393.1|BX680393 BX680393 RS Pinus pinaster cDNA clon... 50 2e-004
gb|CN785187.1|CN785187 EST783878 Sequencing ESTs from loblo... 50 2e-004
gb|CO363267.1|CO363267 RTK1_8_E01.g1_A029 Roots minus potas... 50 2e-004
gb|DN460891.1|DN460891 EST956690 Sequencing ESTs from loblo... 50 2e-004
gb|DN462508.1|DN462508 EST958307 Sequencing ESTs from loblo... 50 2e-004
gb|DN464996.1|DN464996 EST960795 Sequencing ESTs from loblo... 50 2e-004
gb|DT625722.1|DT625722 EST1157646 Sequencing ESTs from lobl... 50 2e-004
gb|DT626970.1|DT626970 EST1160046 Sequencing ESTs from lobl... 50 2e-004
gb|BE810189.1|BE810189 NXCI_061_B02_F NXCI (Nsf Xylem Compr... 48 6e-004
gb|BF169700.1|BF169700 NXCI_126_G01_F NXCI (Nsf Xylem Compr... 48 6e-004
gb|BQ701712.1|BQ701712 NXSI_118_G03_F NXSI (Nsf Xylem Side ... 48 6e-004
gb|BX252408.1|BX252408 BX252408 Pinus pinaster differenciat... 46 0.002
gb|BE644150.1|BE644150 NXCI_052_C12_F NXCI (Nsf Xylem Compr... 44 0.010
gb|CF400922.1|CF400922 RTWW1_8_C09.g1_A015 Well-watered lob... 44 0.010
gb|CN785190.1|CN785190 EST783881 Sequencing ESTs from loblo... 44 0.010
gb|DN464192.1|DN464192 EST959991 Sequencing ESTs from loblo... 44 0.010
gb|DR097977.1|DR097977 STRR1_38_G04.b1_A033 Stem Response R... 44 0.010
gb|DR098052.1|DR098052 STRR1_38_G04.g1_A033 Stem Response R... 44 0.010
gb|CF385429.1|CF385429 RTDR1_3_G07.g1_A015 Loblolly pine ro... 42 0.038
gb|CV137719.1|CV137719 EST848928 Sequencing ESTs from loblo... 42 0.038
gb|CX646684.1|CX646684 COLD1_10_H03.g1_A029 Root cold Pinus... 42 0.038
gb|CX649442.1|CX649442 COLD1_35_G03.b1_A029 Root cold Pinus... 42 0.038
gb|DN461916.1|DN461916 EST957715 Sequencing ESTs from loblo... 42 0.038
gb|DT626496.1|DT626496 EST1158420 Sequencing ESTs from lobl... 42 0.038
gb|DT627114.1|DT627114 EST1160190 Sequencing ESTs from lobl... 42 0.038
gb|DT627400.1|DT627400 EST1160476 Sequencing ESTs from lobl... 42 0.038
gb|AL749545.1|AL749545 AL749545 AN Pinus pinaster cDNA clon... 40 0.15
gb|AW626700.1|AW626700 NXNV068G06 Nsf Xylem Normal wood Ver... 40 0.15
gb|BF169629.1|BF169629 NXCI_125_E02_F NXCI (Nsf Xylem Compr... 40 0.15
gb|BF609678.1|BF609678 NXSI_048_A08_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BF609957.1|BF609957 NXSI_053_A09_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BF610173.1|BF610173 NXSI_055_F04_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BF778470.1|BF778470 NXSI_085_B06_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BG040563.1|BG040563 NXSI_112_F03_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BG040854.1|BG040854 NXSI_116_A05_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BQ701243.1|BQ701243 NXSI_061_C08_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BQ701637.1|BQ701637 NXSI_111_H05_F NXSI (Nsf Xylem Side ... 40 0.15
gb|CF388604.1|CF388604 RTDR2_4_D05.g1_A021 Loblolly pine ro... 40 0.15
gb|CF389156.1|CF389156 RTDR2_13_F01.g1_A021 Loblolly pine r... 40 0.15
gb|CF389591.1|CF389591 RTDR2_8_E07.g1_A021 Loblolly pine ro... 40 0.15
gb|CF471605.1|CF471605 RTDS1_4_B01.g1_A015 Drought-stressed... 40 0.15
gb|CF472348.1|CF472348 RTDS1_9_D03.b1_A015 Drought-stressed... 40 0.15
gb|CF472436.1|CF472436 RTDS1_9_D03.g1_A015 Drought-stressed... 40 0.15
gb|CF472537.1|CF472537 RTDS1_10_D03.b1_A015 Drought-stresse... 40 0.15
gb|CF472560.1|CF472560 RTDS1_10_D03.g1_A015 Drought-stresse... 40 0.15
gb|CF472961.1|CF472961 RTDS1_12_G08.g1_A015 Drought-stresse... 40 0.15
gb|CF474766.1|CF474766 RTWW2_7_E01.g1_A021 Well-watered lob... 40 0.15
gb|CF474791.1|CF474791 RTWW2_7_D01.g1_A021 Well-watered lob... 40 0.15
gb|CF477108.1|CF477108 RTWW3_5_E10.g1_A022 Well-watered lob... 40 0.15
gb|CF665955.1|CF665955 RTCNT1_19_E04.g1_A029 Root control P... 40 0.15
gb|BX681960.1|BX681960 BX681960 RS Pinus pinaster cDNA clon... 40 0.15
gb|CN784251.1|CN784251 EST782942 Sequencing ESTs from loblo... 40 0.15
gb|CO159444.1|CO159444 FLD1_13_D06.g1_A029 Root flooded Pin... 40 0.15
gb|CO409844.1|CO409844 EST840229 Sequencing ESTs from loblo... 40 0.15
gb|CO411582.1|CO411582 EST841967 Sequencing ESTs from loblo... 40 0.15
gb|CO411846.1|CO411846 EST842231 Sequencing ESTs from loblo... 40 0.15
gb|CV135542.1|CV135542 EST846751 Sequencing ESTs from loblo... 40 0.15
gb|CV135689.1|CV135689 EST846898 Sequencing ESTs from loblo... 40 0.15
gb|CV136450.1|CV136450 EST847659 Sequencing ESTs from loblo... 40 0.15
gb|CV137176.1|CV137176 EST848385 Sequencing ESTs from loblo... 40 0.15
gb|CV137306.1|CV137306 EST848515 Sequencing ESTs from loblo... 40 0.15
gb|CV148406.1|CV148406 EST859615 Sequencing ESTs from loblo... 40 0.15
gb|CX650052.1|CX650052 COLD1_43_E10.b1_A029 Root cold Pinus... 40 0.15
gb|DN445799.1|DN445799 EST941598 Sequencing ESTs from loblo... 40 0.15
gb|DN447487.1|DN447487 EST943286 Sequencing ESTs from loblo... 40 0.15
gb|DN448592.1|DN448592 EST944391 Sequencing ESTs from loblo... 40 0.15
gb|DN457518.1|DN457518 EST953317 Sequencing ESTs from loblo... 40 0.15
gb|DN458040.1|DN458040 EST953839 Sequencing ESTs from loblo... 40 0.15
gb|DN458210.1|DN458210 EST954009 Sequencing ESTs from loblo... 40 0.15
gb|DN458427.1|DN458427 EST954226 Sequencing ESTs from loblo... 40 0.15
gb|DN462369.1|DN462369 EST958168 Sequencing ESTs from loblo... 40 0.15
gb|DN463431.1|DN463431 EST959230 Sequencing ESTs from loblo... 40 0.15
gb|DN464575.1|DN464575 EST960374 Sequencing ESTs from loblo... 40 0.15
gb|DN465074.1|DN465074 EST960873 Sequencing ESTs from loblo... 40 0.15
gb|DR022766.1|DR022766 STRS1_53_G11.b1_A034 Shoot tip pitch... 40 0.15
gb|DR022844.1|DR022844 STRS1_53_G11.g1_A034 Shoot tip pitch... 40 0.15
gb|DR059737.1|DR059737 RTNIT1_19_B03.g1_A029 Roots minus ni... 40 0.15
gb|DR094976.1|DR094976 STRR1_18_B01.b1_A033 Stem Response R... 40 0.15
gb|DR095048.1|DR095048 STRR1_18_B01.g1_A033 Stem Response R... 40 0.15
gb|DR743584.1|DR743584 RTCU1_16_G12.g1_A029 Roots plus adde... 40 0.15
gb|DR745809.1|DR745809 RTCU1_32_E03.g1_A029 Roots plus adde... 40 0.15
gb|DT626479.1|DT626479 EST1158403 Sequencing ESTs from lobl... 40 0.15
gb|DT626794.1|DT626794 EST1159870 Sequencing ESTs from lobl... 40 0.15
gb|DT627516.1|DT627516 EST1160592 Sequencing ESTs from lobl... 40 0.15
gb|AF013803.1| Pinus taeda H2A homolog (lp15) gene, complet... 40 0.15
>gb|BX252765.1|BX252765 BX252765 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070D09 similar to Histone H2A, mRNA
sequence
Length = 691
Score = 56.0 bits (28), Expect = 3e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | |||||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 25 ccgtctacgttgctgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 84
Query: 310 acgcagcgcgggacaacaagaaga 333
|||| || ||||||||||||||||
Sbjct: 85 acgctgcccgggacaacaagaaga 108
>gb|BX254590.1|BX254590 BX254590 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP100G11 similar to Histone H2A, mRNA
sequence
Length = 681
Score = 56.0 bits (28), Expect = 3e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | |||||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 25 ccgtctacgttgctgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 84
Query: 310 acgcagcgcgggacaacaagaaga 333
|||| || ||||||||||||||||
Sbjct: 85 acgctgcccgggacaacaagaaga 108
>gb|CF392359.1|CF392359 RTDR3_7_A08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_A08_A022 5', mRNA
sequence
Length = 532
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 249 cccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggc 304
||||| |||||||||||||| || || || |||||||||||| | |||||||||||
Sbjct: 361 cccgtttacctcgctgccgttcttgaatatctcgccgccgaggtgctcgagttggc 306
>gb|DN463075.1|DN463075 EST958874 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIU35 5' end, mRNA sequence
Length = 741
Score = 56.0 bits (28), Expect = 3e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 247 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 306
Query: 330 aagaaccggatcatcccgcgacac 353
|||| | | |||||||| ||||||
Sbjct: 307 aagaccagaatcatcccacgacac 330
>gb|DR071572.1|DR071572 RTDK1_20_F05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_20_F05_A029 5', mRNA sequence
Length = 497
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 249 cccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggc 304
||||| |||||||||||||| || || || |||||||||||| | |||||||||||
Sbjct: 187 cccgtttacctcgctgccgttcttgaatatctcgccgccgaggtgctcgagttggc 242
>gb|CN784170.1|CN784170 EST782861 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAI12 5' end, mRNA sequence
Length = 803
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 207 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 266
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 267 acgctgcccgggacaacaagaagacccgaatcat 300
>gb|CN784233.1|CN784233 EST782924 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAI93 5' end, mRNA sequence
Length = 745
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 218 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 277
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 278 acgctgcccgggacaacaagaagacccgaatcat 311
>gb|CO410453.1|CO410453 EST840838 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAL331 5' end, mRNA sequence
Length = 549
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 209 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 268
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 269 acgctgcccgggacaacaagaagacccgaatcat 302
>gb|CO411472.1|CO411472 EST841857 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALK70 5' end, mRNA sequence
Length = 808
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 203 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 262
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 263 acgctgcccgggacaacaagaagacccgaatcat 296
>gb|CV144315.1|CV144315 EST855524 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID393 5' end, mRNA sequence
Length = 834
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 219 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 278
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 279 acgctgcccgggacaacaagaagacccgaatcat 312
>gb|DN460103.1|DN460103 EST955902 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHU62 5' end, mRNA sequence
Length = 817
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 221 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 280
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 281 acgctgcccgggacaacaagaagacccgaatcat 314
>gb|DN460247.1|DN460247 EST956046 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHW29 5' end, mRNA sequence
Length = 752
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 219 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 278
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 279 acgctgcccgggacaacaagaagacccgaatcat 312
>gb|DN462568.1|DN462568 EST958367 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIN94 5' end, mRNA sequence
Length = 808
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 193 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 252
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 253 acgctgcccgggacaacaagaagacccgaatcat 286
>gb|DN463442.1|DN463442 EST959241 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIY88 5' end, mRNA sequence
Length = 835
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 220 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 279
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 280 acgctgcccgggacaacaagaagacccgaatcat 313
>gb|DN463525.1|DN463525 EST959324 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIZ93 5' end, mRNA sequence
Length = 915
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 210 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 269
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 270 acgctgcccgggacaacaagaagacccgaatcat 303
>gb|DN463571.1|DN463571 EST959370 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJ052 5' end, mRNA sequence
Length = 800
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 203 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 262
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 263 acgctgcccgggacaacaagaagacccgaatcat 296
>gb|DR742490.1|DR742490 RTCU1_4_H03.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_4_H03_A029 3', mRNA sequence
Length = 648
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 118 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 177
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 178 acgctgcccgggacaacaagaagacccgaatcat 211
>gb|DT627405.1|DT627405 EST1160481 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAY25 5' end, mRNA sequence
Length = 919
Score = 52.0 bits (26), Expect = 4e-005
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 210 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 269
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||||||||||| ||| |||||
Sbjct: 270 acgctgcccgggacaacaagaagacccgaatcat 303
>gb|BX680393.1|BX680393 BX680393 RS Pinus pinaster cDNA clone RS42H01, mRNA sequence
Length = 587
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 164 gaaggccggcctccagttccccgtaggccgtat 196
|||||||||||| |||||||||||||| |||||
Sbjct: 116 gaaggccggccttcagttccccgtagggcgtat 148
Score = 40.1 bits (20), Expect = 0.15
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 249 cccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggc 304
||||| ||||||||||| || || || || |||||||| ||| | |||||||||||
Sbjct: 201 cccgtttacctcgctgctgttcttgaatatctcgccgcagaggtgctcgagttggc 256
>gb|CN785187.1|CN785187 EST783878 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAV66 5' end, mRNA sequence
Length = 921
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 240 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 299
Query: 330 aagaaccggatcatccc 346
|||| | | ||||||||
Sbjct: 300 aagaccagaatcatccc 316
>gb|CO363267.1|CO363267 RTK1_8_E01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_E01_A029 5', mRNA sequence
Length = 731
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 253 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 312
Query: 330 aagaaccggatcatccc 346
|||| | | ||||||||
Sbjct: 313 aagaccagaatcatccc 329
>gb|DN460891.1|DN460891 EST956690 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII375 5' end, mRNA sequence
Length = 816
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 244 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 303
Query: 330 aagaaccggatcatccc 346
|||| | | ||||||||
Sbjct: 304 aagaccagaatcatccc 320
>gb|DN462508.1|DN462508 EST958307 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIN27 5' end, mRNA sequence
Length = 751
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 239 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 298
Query: 330 aagaaccggatcatccc 346
|||| | | ||||||||
Sbjct: 299 aagaccagaatcatccc 315
>gb|DN464996.1|DN464996 EST960795 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJJ55 5' end, mRNA sequence
Length = 704
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 247 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 306
Query: 330 aagaaccggatcatccc 346
|||| | | ||||||||
Sbjct: 307 aagaccagaatcatccc 323
>gb|DT625722.1|DT625722 EST1157646 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA303 5' end, mRNA sequence
Length = 912
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 239 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 298
Query: 330 aagaaccggatcatccc 346
|||| | | ||||||||
Sbjct: 299 aagaccagaatcatccc 315
>gb|DT626970.1|DT626970 EST1160046 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAT38 5' end, mRNA sequence
Length = 840
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 270 ctcgagtacctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaag 329
||||| ||||||||||||||| | | || ||||| || |||||||| || |||||||||
Sbjct: 244 ctcgaatacctcgccgccgaggtgttggaattggctggaaacgcagcccgtgacaacaag 303
Query: 330 aagaaccggatcatccc 346
|||| | | ||||||||
Sbjct: 304 aagaccagaatcatccc 320
>gb|BE810189.1|BE810189 NXCI_061_B02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_061_B02 5' similar to Arabidopsis
thaliana sequence At1g54690 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 355
Score = 48.1 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcggccgctacctcaag 212
||||||||||||||||||||||| ||| | |||| ||| | |||||||
Sbjct: 105 aaggccggcctccagttccccgtgggcagaatcgcccggttcctcaag 152
>gb|BF169700.1|BF169700 NXCI_126_G01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_126_G01 5' similar to Arabidopsis
thaliana sequence At4g27230 histone H2A- like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 271
Score = 48.1 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcggccgctacctcaag 212
||||||||||||||||||||||| ||| | |||| ||| | |||||||
Sbjct: 110 aaggccggcctccagttccccgtgggcagaatcgcccggttcctcaag 157
>gb|BQ701712.1|BQ701712 NXSI_118_G03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_118_G03 5' similar to Arabidopsis thaliana
sequence At1g51060 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 48.1 bits (24), Expect = 6e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcggccgctacctcaag 212
||||||||||||||||||||||| ||| | |||| ||| | |||||||
Sbjct: 123 aaggccggcctccagttccccgtgggcagaatcgcccggttcctcaag 170
>gb|BX252408.1|BX252408 BX252408 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP064B01, mRNA sequence
Length = 472
Score = 46.1 bits (23), Expect = 0.002
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 279 ctcgccgccgagctcctcgagttggcggggaacgcagcgcgggacaacaagaagaaccgg 338
|||||||||||| | | || ||||| || ||||| || || ||||||||||||| | ||
Sbjct: 38 ctcgccgccgaggtgttggaattggccggaaacgccgcccgtgacaacaagaagagcagg 97
Query: 339 atcatcccgcgacac 353
|||||||| ||||||
Sbjct: 98 atcatccctcgacac 112
>gb|BE644150.1|BE644150 NXCI_052_C12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_052_C12 5' similar to Arabidopsis
thaliana sequence At4g27230 histone H2A- like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 220
Score = 44.1 bits (22), Expect = 0.010
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 249 cccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggc 304
||||| |||||||||||||| || || || |||||| |||| | |||||||||||
Sbjct: 128 cccgtttacctcgctgccgttcttgaatatctcgccnncgaggtgctcgagttggc 183
>gb|CF400922.1|CF400922 RTWW1_8_C09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_8_C09_A015 5', mRNA sequence
Length = 801
Score = 44.1 bits (22), Expect = 0.010
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 200 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 259
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||| ||||||| ||| |||||
Sbjct: 260 acgctgcccgggacaataagaagacccgaatcat 293
>gb|CN785190.1|CN785190 EST783881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAV71 5' end, mRNA sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.010
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 219 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 278
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|||| || |||||||| ||||||| ||| |||||
Sbjct: 279 acgctgcccgggacaataagaagacccgaatcat 312
>gb|DN464192.1|DN464192 EST959991 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJ852 5' end, mRNA sequence
Length = 180
Score = 44.1 bits (22), Expect = 0.010
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | | || ||||| || |
Sbjct: 54 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgttggaattggccggaa 113
Query: 310 acgcagcgcgggacaacaagaagaaccggatcat 343
|| | || |||||||||||||||| ||| |||||
Sbjct: 114 actctgcccgggacaacaagaagacccgaatcat 147
>gb|DR097977.1|DR097977 STRR1_38_G04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_38_G04_A033 3', mRNA sequence
Length = 803
Score = 44.1 bits (22), Expect = 0.010
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 300 ttggcggggaacgcagcgcgggacaacaagaagaaccggatcatcccgcgacac 353
||||| || ||||| || || ||||||||||||| | |||||||||| ||||||
Sbjct: 115 ttggccggaaacgccgcccgtgacaacaagaagagcaggatcatccctcgacac 168
>gb|DR098052.1|DR098052 STRR1_38_G04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_38_G04_A033 5', mRNA sequence
Length = 675
Score = 44.1 bits (22), Expect = 0.010
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 300 ttggcggggaacgcagcgcgggacaacaagaagaaccggatcatcccgcgacac 353
||||| || ||||| || || ||||||||||||| | |||||||||| ||||||
Sbjct: 238 ttggccggaaacgccgcccgtgacaacaagaagagcaggatcatccctcgacac 291
>gb|CF385429.1|CF385429 RTDR1_3_G07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_G07_A015 5', mRNA
sequence
Length = 616
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | || || ||||| || |
Sbjct: 170 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgctggaattggctggaa 229
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
| || || || ||||||||||||| | | ||||||||
Sbjct: 230 atgctgcccgtgacaacaagaagaccagaatcatccc 266
>gb|CV137719.1|CV137719 EST848928 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAT49 5' end, mRNA sequence
Length = 782
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || | ||||||||| | | || ||||| || |
Sbjct: 210 ccgtctacgttgccgccgtcctcgaatatttggccgccgaggtgttggaattggctggaa 269
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
||||||| || ||||||||||||| | | ||||||||
Sbjct: 270 acgcagcccgtgacaacaagaagaccagaatcatccc 306
>gb|CX646684.1|CX646684 COLD1_10_H03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_H03_A029 5', mRNA sequence
Length = 872
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | || || ||||| || |
Sbjct: 546 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgctggaattggctggaa 487
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
| || || || ||||||||||||| | | ||||||||
Sbjct: 486 atgctgcccgtgacaacaagaagaccagaatcatccc 450
>gb|CX649442.1|CX649442 COLD1_35_G03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_G03_A029 3', mRNA sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || | ||||||||| | | || ||||| || |
Sbjct: 125 ccgtctacgttgccgccgtcctcgaatatttggccgccgaggtgttggaattggctggaa 184
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
||||||| || ||||||||||||| | | ||||||||
Sbjct: 185 acgcagcccgtgacaacaagaagaccagaatcatccc 221
>gb|DN461916.1|DN461916 EST957715 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIG06 5' end, mRNA sequence
Length = 840
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | || || ||||| || |
Sbjct: 237 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgctggaattggctggaa 296
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
| || || || ||||||||||||| | | ||||||||
Sbjct: 297 atgctgcccgtgacaacaagaagaccagaatcatccc 333
>gb|DT626496.1|DT626496 EST1158420 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB46 5' end, mRNA sequence
Length = 714
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || | ||||||||| | | || ||||| || |
Sbjct: 210 ccgtctacgttgccgccgtcctcgaatatttggccgccgaggtgttggaattggctggaa 269
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
||||||| || ||||||||||||| | | ||||||||
Sbjct: 270 acgcagcccgtgacaacaagaagaccagaatcatccc 306
>gb|DT627114.1|DT627114 EST1160190 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAV05 5' end, mRNA sequence
Length = 840
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || || ||||||||| | || || ||||| || |
Sbjct: 237 ccgtctacgttgccgccgtcctcgaatatcttgccgccgaggtgctggaattggctggaa 296
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
| || || || ||||||||||||| | | ||||||||
Sbjct: 297 atgctgcccgtgacaacaagaagaccagaatcatccc 333
>gb|DT627400.1|DT627400 EST1160476 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAY20 5' end, mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.038
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 250 ccgtctacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcgggga 309
|||||||| | || ||||||||||| || | ||||||||| | | || ||||| || |
Sbjct: 210 ccgtctacgttgccgccgtcctcgaatatttggccgccgaggtgttggaattggctggaa 269
Query: 310 acgcagcgcgggacaacaagaagaaccggatcatccc 346
||||||| || ||||||||||||| | | ||||||||
Sbjct: 270 acgcagcccgtgacaacaagaagaccagaatcatccc 306
>gb|AL749545.1|AL749545 AL749545 AN Pinus pinaster cDNA clone AN01B05 similar to HISTONE
H2A, mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccc 184
||||||||||||||||||||
Sbjct: 118 aaggccggcctccagttccc 137
>gb|AW626700.1|AW626700 NXNV068G06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV068G06 5' similar to Arabidopsis thaliana sequence
At4g27230 histone H2A- like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 290
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccc 184
||||||||||||||||||||
Sbjct: 123 aaggccggcctccagttccc 142
>gb|BF169629.1|BF169629 NXCI_125_E02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_125_E02 5' similar to Arabidopsis
thaliana sequence At5g54640 histone H2A (gb|AAF64418.1)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 318
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccc 184
||||||||||||||||||||
Sbjct: 97 aaggccggcctccagttccc 116
>gb|BF609678.1|BF609678 NXSI_048_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_048_A08 5' similar to Arabidopsis thaliana
sequence At1g51060 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 499
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccc 184
||||||||||||||||||||
Sbjct: 91 aaggccggcctccagttccc 110
>gb|BF609957.1|BF609957 NXSI_053_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_053_A09 5' similar to Arabidopsis thaliana
sequence At4g27230 histone H2A- like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccc 184
||||||||||||||||||||
Sbjct: 109 aaggccggcctccagttccc 128
>gb|BF610173.1|BF610173 NXSI_055_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_055_F04 5' similar to Arabidopsis thaliana
sequence At1g51060 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccc 184
||||||||||||||||||||
Sbjct: 118 aaggccggcctccagttccc 137
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,072
Number of Sequences: 355925
Number of extensions: 102072
Number of successful extensions: 39817
Number of sequences better than 0.5: 104
Number of HSP's better than 0.5 without gapping: 102
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39594
Number of HSP's gapped (non-prelim): 223
length of query: 887
length of database: 217,277,237
effective HSP length: 19
effective length of query: 868
effective length of database: 210,514,662
effective search space: 182726726616
effective search space used: 182726726616
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)