BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciat... 44 0.010
gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered lo... 44 0.010
gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pin... 44 0.010
gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pin... 44 0.010
gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pin... 44 0.010
gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus pota... 44 0.010
gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus pota... 44 0.010
gb|DN611719.1|DN611719 EST964769 Subtracted pine embryo lib... 44 0.010
gb|DN613220.1|DN613220 EST966270 Subtracted pine embryo lib... 44 0.010
gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch... 44 0.010
gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch... 44 0.010
gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch... 44 0.010
gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch... 44 0.010
gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response R... 44 0.010
gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response R... 44 0.010
gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus ph... 44 0.010
gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo li... 44 0.010
gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo li... 44 0.010
gb|DN611746.1|DN611746 EST964796 Subtracted pine embryo lib... 42 0.038
gb|DT628780.1|DT628780 EST1155350 Subtracted pine embryo li... 42 0.038
gb|DT629366.1|DT629366 EST1155936 Subtracted pine embryo li... 42 0.038
gb|BX253102.1|BX253102 BX253102 Pinus pinaster differenciat... 40 0.15
gb|BX253398.1|BX253398 BX253398 Pinus pinaster differenciat... 40 0.15
gb|BX254391.1|BX254391 BX254391 Pinus pinaster differenciat... 40 0.15
gb|BF220491.1|BF220491 NXCI_147_C02_F NXCI (Nsf Xylem Compr... 40 0.15
gb|BF517433.1|BF517433 NXSI_021_F12_F NXSI (Nsf Xylem Side ... 40 0.15
gb|BM427823.1|BM427823 NXRV_003_G05_F NXRV (Nsf Xylem Root ... 40 0.15
gb|BQ697043.1|BQ697043 NXPV_048_E11_F NXPV (Nsf Xylem Plani... 40 0.15
gb|BQ697098.1|BQ697098 NXPV_049_E04_F NXPV (Nsf Xylem Plani... 40 0.15
gb|CD025671.1|CD025671 NXSI_074_B07_F NXSI (Nsf Xylem Side ... 40 0.15
gb|DN613892.1|DN613892 EST966942 Subtracted pine embryo lib... 40 0.15
gb|DR097390.1|DR097390 STRR1_34_H07.b1_A033 Stem Response R... 40 0.15
gb|DR097481.1|DR097481 STRR1_34_H07.g3_A033 Stem Response R... 40 0.15
>gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088F04, mRNA sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 369 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 414
>gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_F05_A021 5', mRNA sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 342 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 387
>gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 3', mRNA sequence
Length = 788
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 293 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 248
>gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F04_A029 3', mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 164 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 119
>gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 5', mRNA sequence
Length = 877
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 791 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 746
>gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_A08_A029 5', mRNA sequence
Length = 866
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 809 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 764
>gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 3', mRNA sequence
Length = 853
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 255 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 300
>gb|DN611719.1|DN611719 EST964769 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB587, mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 871 tgtacctgcccggggcggccgc 892
||||||||||||||||||||||
Sbjct: 26 tgtacctgcccggggcggccgc 5
>gb|DN613220.1|DN613220 EST966270 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABP56, mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 871 tgtacctgcccggggcggccgc 892
||||||||||||||||||||||
Sbjct: 26 tgtacctgcccggggcggccgc 5
>gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 3', mRNA sequence
Length = 763
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 150 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 195
>gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 5', mRNA sequence
Length = 766
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 384 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 429
>gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 3', mRNA sequence
Length = 778
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 121 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 166
>gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_B09_A034 5', mRNA sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 639 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 594
>gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 3', mRNA sequence
Length = 821
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 224 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 269
>gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 5', mRNA sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 406 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 451
>gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_6_H02_A029 3', mRNA sequence
Length = 929
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 20 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 65
>gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO79 3' end, mRNA sequence
Length = 780
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 410 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 455
>gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD90 3' end, mRNA sequence
Length = 842
Score = 44.1 bits (22), Expect = 0.010
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 663 cctgcttgcaggcactctccagaaggatccactatgggaagtttgt 708
|||| |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 449 cctgtttgcaggccatctctagaaggatccattatggaaagtttgt 494
>gb|DN611746.1|DN611746 EST964796 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB622, mRNA sequence
Length = 179
Score = 42.1 bits (21), Expect = 0.038
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 872 gtacctgcccggggcggccgc 892
|||||||||||||||||||||
Sbjct: 154 gtacctgcccggggcggccgc 174
>gb|DT628780.1|DT628780 EST1155350 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD190 5' end, mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.038
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 872 gtacctgcccggggcggccgc 892
|||||||||||||||||||||
Sbjct: 596 gtacctgcccggggcggccgc 616
>gb|DT629366.1|DT629366 EST1155936 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD861 5' end, mRNA sequence
Length = 143
Score = 42.1 bits (21), Expect = 0.038
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 872 gtacctgcccggggcggccgc 892
|||||||||||||||||||||
Sbjct: 119 gtacctgcccggggcggccgc 139
>gb|BX253102.1|BX253102 BX253102 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077H10, mRNA sequence
Length = 710
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 285 cggcggcgtcgcccgcttctgctc 308
>gb|BX253398.1|BX253398 BX253398 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083A09, mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 275 cggcggcgtcgcccgcttctgctc 298
>gb|BX254391.1|BX254391 BX254391 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098A07, mRNA sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 284 cggcggcgtcgcccgcttctgctc 307
>gb|BF220491.1|BF220491 NXCI_147_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_147_C02 5', mRNA sequence
Length = 383
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 238 cggcggcgtcgcccgcttctgctc 261
>gb|BF517433.1|BF517433 NXSI_021_F12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_021_F12 5', mRNA sequence
Length = 459
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 238 cggcggcgtcgcccgcttctgctc 261
>gb|BM427823.1|BM427823 NXRV_003_G05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_003_G05 5', mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 254 cggcggcgtcgcccgcttctgctc 277
>gb|BQ697043.1|BQ697043 NXPV_048_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_048_E11 5', mRNA sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 215 cggcggcgtcgcccgcttctgctc 238
>gb|BQ697098.1|BQ697098 NXPV_049_E04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_049_E04 5', mRNA sequence
Length = 427
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 215 cggcggcgtcgcccgcttctgctc 238
>gb|CD025671.1|CD025671 NXSI_074_B07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_074_B07 5', mRNA sequence
Length = 179
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 38 cggcggcgtcgcccgcttctgctc 61
>gb|DN613892.1|DN613892 EST966942 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABX64, mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 869 gctgtacctgcccggggcggccgc 892
||||||||||||| ||||||||||
Sbjct: 563 gctgtacctgccccgggcggccgc 586
>gb|DR097390.1|DR097390 STRR1_34_H07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_H07_A033 3', mRNA sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 257 cggcggcgtcgcccgcttctgctc 280
>gb|DR097481.1|DR097481 STRR1_34_H07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_H07_A033 5', mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 cggcggcgtcgcccgctgctgctc 116
||||||||||||||||| ||||||
Sbjct: 241 cggcggcgtcgcccgcttctgctc 264
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,636
Number of Sequences: 355925
Number of extensions: 106636
Number of successful extensions: 31087
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31028
Number of HSP's gapped (non-prelim): 59
length of query: 892
length of database: 217,277,237
effective HSP length: 19
effective length of query: 873
effective length of database: 210,514,662
effective search space: 183779299926
effective search space used: 183779299926
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)