BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521334.2.1
(1277 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BD236037.1| Materials and method for modification of pl... 54 1e-005
gb|BX681955.1|BX681955 BX681955 RS Pinus pinaster cDNA clon... 48 9e-004
gb|CF390271.1|CF390271 RTDR2_18_E10.g1_A021 Loblolly pine r... 40 0.22
gb|CF393636.1|CF393636 RTDR3_15_C10.g1_A022 Loblolly pine r... 40 0.22
gb|CF395289.1|CF395289 RTDS2_10_F05.g1_A021 Drought-stresse... 40 0.22
gb|CR354730.1|CR354730 CR354730 Pinus pinaster differenciat... 40 0.22
gb|CO368127.1|CO368127 RTK1_38_F10.g1_A029 Roots minus pota... 40 0.22
gb|CO370469.1|CO370469 RTK1_68_C11.b1_A029 Roots minus pota... 40 0.22
gb|CX645436.1|CX645436 COLD1_2_F10.g1_A029 Root cold Pinus ... 40 0.22
gb|DR021006.1|DR021006 STRS1_40_E12.g1_A034 Shoot tip pitch... 40 0.22
gb|DR021894.1|DR021894 STRS1_47_C06.g1_A034 Shoot tip pitch... 40 0.22
gb|DR089733.1|DR089733 RTAL1_10_B01.g1_A029 Roots plus adde... 40 0.22
gb|DR110618.1|DR110618 RTS1_12_A01.b1_A029 Roots minus sulf... 40 0.22
gb|DR110698.1|DR110698 RTS1_12_A01.g1_A029 Roots minus sulf... 40 0.22
gb|DR117549.1|DR117549 RTMG1_7_D09.g1_A029 Roots minus magn... 40 0.22
gb|DR118455.1|DR118455 RTMG1_17_C11.b1_A029 Roots minus mag... 40 0.22
gb|DR118532.1|DR118532 RTMG1_17_C11.g1_A029 Roots minus mag... 40 0.22
gb|DR387861.1|DR387861 RTHG1_24_D03.g2_A029 Roots plus adde... 40 0.22
gb|DR687288.1|DR687288 EST1077369 Normalized pine embryo li... 40 0.22
gb|DR691737.1|DR691737 EST1081824 Normalized pine embryo li... 40 0.22
gb|DT634092.1|DT634092 EST1149023 Normalized pine embryo li... 40 0.22
dbj|BD236005.1| Materials and method for modification of pl... 40 0.22
>dbj|BD236037.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 789
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 605 tacttcatgagaagatccatcacaaggcttacagtgatgatgagatcatcagaat 659
|||||||||||||||| || | |||||||||| | |||||||| ||||||||||
Sbjct: 593 tacttcatgagaagattcacgagaaggcttacaatcatgatgagctcatcagaat 647
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 730 atcaacaaggatctgaaggctga 752
|||||||||||||||||||||||
Sbjct: 718 atcaacaaggatctgaaggctga 740
>gb|BX681955.1|BX681955 BX681955 RS Pinus pinaster cDNA clone RS67C12, mRNA sequence
Length = 314
Score = 48.1 bits (24), Expect = 9e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
||||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 29 gacttccgcaagctactagttcaacttgtaagttcttaccgatatgaaggtccaga 84
>gb|CF390271.1|CF390271 RTDR2_18_E10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_18_E10_A021 5', mRNA
sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 558 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 613
>gb|CF393636.1|CF393636 RTDR3_15_C10.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_15_C10_A022 5', mRNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 452 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 507
>gb|CF395289.1|CF395289 RTDS2_10_F05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_10_F05_A021 5', mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 221 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 276
>gb|CR354730.1|CR354730 CR354730 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 125F06, mRNA sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
||||||||||||||| | || | |||||||||| || |||| ||||| || |||||
Sbjct: 592 gacttccgcaagctactagttcaacttgtaagttctcaccgatatgaaggtccaga 647
>gb|CO368127.1|CO368127 RTK1_38_F10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_38_F10_A029 5', mRNA sequence
Length = 857
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 200 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 255
>gb|CO370469.1|CO370469 RTK1_68_C11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_C11_A029 3', mRNA sequence
Length = 858
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 344 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 289
>gb|CX645436.1|CX645436 COLD1_2_F10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_2_F10_A029 5', mRNA sequence
Length = 768
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 241 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 296
>gb|DR021006.1|DR021006 STRS1_40_E12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_E12_A034 5', mRNA sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 26 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 81
>gb|DR021894.1|DR021894 STRS1_47_C06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_47_C06_A034 5', mRNA sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 393 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 448
>gb|DR089733.1|DR089733 RTAL1_10_B01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_B01_A029 5', mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 259 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 314
>gb|DR110618.1|DR110618 RTS1_12_A01.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_A01_A029 3', mRNA sequence
Length = 835
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 102 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 157
>gb|DR110698.1|DR110698 RTS1_12_A01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_A01_A029 5', mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 341 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 396
>gb|DR117549.1|DR117549 RTMG1_7_D09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_D09_A029 5', mRNA sequence
Length = 898
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 817 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 762
>gb|DR118455.1|DR118455 RTMG1_17_C11.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_C11_A029 3', mRNA sequence
Length = 891
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 439 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 384
>gb|DR118532.1|DR118532 RTMG1_17_C11.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_C11_A029 5', mRNA sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 761 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 706
>gb|DR387861.1|DR387861 RTHG1_24_D03.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_D03_A029 5', mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 438 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 493
>gb|DR687288.1|DR687288 EST1077369 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABQ20 3' end, mRNA sequence
Length = 716
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 498 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 553
>gb|DR691737.1|DR691737 EST1081824 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADC32 3' end, mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 564 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 619
>gb|DT634092.1|DT634092 EST1149023 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG217 3' end, mRNA sequence
Length = 752
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 506 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 561
>dbj|BD236005.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 2132
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 1802 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 1857
Score = 40.1 bits (20), Expect = 0.22
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 514 gacttccgcaagctattggtgccacttgtaagtacttaccgctatgatggaccaga 569
|||||||||||||| | || | |||||||||| ||||||| ||||| || |||||
Sbjct: 737 gacttccgcaagctgctagttcaacttgtaagttcttaccgatatgaaggtccaga 792
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,401
Number of Sequences: 355925
Number of extensions: 104401
Number of successful extensions: 26817
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26791
Number of HSP's gapped (non-prelim): 26
length of query: 1277
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1258
effective length of database: 210,514,662
effective search space: 264827444796
effective search space used: 264827444796
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)