BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493976.2.1
(1294 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF610570.1|BF610570 NXSI_060_B07_F NXSI (Nsf Xylem Side ... 92 7e-017
gb|CO197872.1|CO197872 GEO1_9_E12.g1_A029 Root gravitropism... 92 7e-017
gb|CX649938.1|CX649938 COLD1_42_B01.g1_A029 Root cold Pinus... 92 7e-017
gb|DR070312.1|DR070312 RTDK1_12_C03.g1_A029 Roots, dark Pin... 92 7e-017
gb|DR181356.1|DR181356 RTMNUT1_38_A01.g2_A029 Roots minus m... 92 7e-017
gb|BE582419.1|BE582419 NXCI_033_B08_F NXCI (Nsf Xylem Compr... 88 1e-015
gb|CX651774.1|CX651774 COLD1_54_E06.g1_A029 Root cold Pinus... 84 2e-014
gb|BX250040.1|BX250040 BX250040 Pinus pinaster differenciat... 76 4e-012
gb|DR097316.1|DR097316 STRR1_33_H05.g3_A033 Stem Response R... 72 6e-011
gb|CF663902.1|CF663902 RTCNT1_5_H12.g1_A029 Root control Pi... 70 2e-010
gb|U64894.1|PTU64894 Pinus taeda expansin mRNA, partial cds 70 2e-010
gb|CV144435.1|CV144435 EST855644 Sequencing ESTs from loblo... 68 1e-009
gb|DR010861.1|DR010861 HEAT1_1_F12.g1_A029 Root at 37 C for... 68 1e-009
gb|DR019211.1|DR019211 STRS1_28_B06.g1_A034 Shoot tip pitch... 68 1e-009
gb|DT624714.1|DT624714 EST1159049 Sequencing ESTs from lobl... 68 1e-009
gb|BF517063.1|BF517063 NXSI_008_G03_F NXSI (Nsf Xylem Side ... 66 4e-009
gb|BF518096.1|BF518096 NXSI_030_H10_F NXSI (Nsf Xylem Side ... 66 4e-009
gb|BF609490.1|BF609490 NXSI_043_C03_F NXSI (Nsf Xylem Side ... 66 4e-009
gb|BQ654413.1|BQ654413 NXRV080_A02_F NXRV (Nsf Xylem Root w... 66 4e-009
gb|CF391855.1|CF391855 RTDR3_10_C05.g1_A022 Loblolly pine r... 66 4e-009
gb|CN784348.1|CN784348 EST783039 Sequencing ESTs from loblo... 66 4e-009
gb|DR688987.1|DR688987 EST1079073 Normalized pine embryo li... 66 4e-009
gb|DR692635.1|DR692635 EST1082723 Normalized pine embryo li... 66 4e-009
gb|DT625757.1|DT625757 EST1157681 Sequencing ESTs from lobl... 66 4e-009
gb|AA556812.1|AA556812 654 Loblolly pine C Pinus taeda cDNA... 64 2e-008
gb|AA556861.1|AA556861 703 Loblolly pine C Pinus taeda cDNA... 64 2e-008
gb|AA556399.1|AA556399 254 Loblolly pine C Pinus taeda cDNA... 62 6e-008
gb|AW290022.1|AW290022 NXNV009F01F Nsf Xylem Normal wood Ve... 62 6e-008
gb|AW587662.1|AW587662 ST63B06 Pine TriplEx shoot tip libra... 62 6e-008
gb|AW697618.1|AW697618 ST61B04 Pine TriplEx shoot tip libra... 62 6e-008
gb|BX251144.1|BX251144 BX251144 Pinus pinaster differenciat... 62 6e-008
gb|BX251561.1|BX251561 BX251561 Pinus pinaster differenciat... 62 6e-008
gb|BX251613.1|BX251613 BX251613 Pinus pinaster differenciat... 62 6e-008
gb|BX253271.1|BX253271 BX253271 Pinus pinaster differenciat... 62 6e-008
gb|AW698040.1|AW698040 NXNV_078_B06_F Nsf Xylem Normal wood... 62 6e-008
gb|BE761955.1|BE761955 NXCI_075_C03_F NXCI (Nsf Xylem Compr... 62 6e-008
gb|BF049828.1|BF049828 NXCI_111_D09_F NXCI (Nsf Xylem Compr... 62 6e-008
gb|BF186130.1|BF186130 NXCI_133_A11_F NXCI (Nsf Xylem Compr... 62 6e-008
gb|BF517775.1|BF517775 NXSI_031_A12_F NXSI (Nsf Xylem Side ... 62 6e-008
gb|BF609532.1|BF609532 NXSI_043_G01_F NXSI (Nsf Xylem Side ... 62 6e-008
gb|BF609736.1|BF609736 NXSI_048_G12_F NXSI (Nsf Xylem Side ... 62 6e-008
gb|BM427751.1|BM427751 NXRV_002_G05_F NXRV (Nsf Xylem Root ... 62 6e-008
gb|BQ635086.1|BQ635086 NXRV076_G12_F NXRV (Nsf Xylem Root w... 62 6e-008
gb|BQ654617.1|BQ654617 NXRV083_A04_F NXRV (Nsf Xylem Root w... 62 6e-008
gb|CD026679.1|CD026679 NXNV009F01 Nsf Xylem Normal wood Ver... 62 6e-008
gb|CF386013.1|CF386013 RTDR1_7_F11.g1_A015 Loblolly pine ro... 62 6e-008
gb|CF391890.1|CF391890 RTDR3_10_G01.g1_A022 Loblolly pine r... 62 6e-008
gb|CF479851.1|CF479851 RTWW3_12_D07.g1_A022 Well-watered lo... 62 6e-008
gb|CF668487.1|CF668487 RTCNT1_36_F12.g1_A029 Root control P... 62 6e-008
gb|BX682844.1|BX682844 BX682844 Pinus pinaster differenciat... 62 6e-008
gb|CR393207.1|CR393207 CR393207 RN Pinus pinaster cDNA clon... 62 6e-008
gb|CX649475.1|CX649475 COLD1_35_B04.g1_A029 Root cold Pinus... 62 6e-008
gb|CX650703.1|CX650703 COLD1_47_B12.g1_A029 Root cold Pinus... 62 6e-008
gb|DR011619.1|DR011619 HEAT1_6_G09.g1_A029 Root at 37 C for... 62 6e-008
gb|DR015281.1|DR015281 STRS1_2_C05.g1_A034 Shoot tip pitch ... 62 6e-008
gb|DR022663.1|DR022663 STRS1_52_D06.g1_A034 Shoot tip pitch... 62 6e-008
gb|DR024833.1|DR024833 STRS1_67_F03.g1_A034 Shoot tip pitch... 62 6e-008
gb|DR051531.1|DR051531 RTBOR1_30_E09.g1_A029 Roots plus add... 62 6e-008
gb|DR055148.1|DR055148 RTCA1_21_G09.g2_A029 Roots minus cal... 62 6e-008
gb|DR056610.1|DR056610 RTCA1_31_A02.g1_A029 Roots minus cal... 62 6e-008
gb|DR070152.1|DR070152 RTDK1_11_D01.g1_A029 Roots, dark Pin... 62 6e-008
gb|DR070179.1|DR070179 RTDK1_11_F07.g1_A029 Roots, dark Pin... 62 6e-008
gb|DR079899.1|DR079899 RTFEPL1_18_B10.g1_A029 Roots plus ad... 62 6e-008
gb|DR080162.1|DR080162 RTFEPL1_20_E11.g1_A029 Roots plus ad... 62 6e-008
gb|DR089298.1|DR089298 RTAL1_7_G03.g1_A029 Roots plus added... 62 6e-008
gb|DR090373.1|DR090373 RTAL1_14_D02.g1_A029 Roots plus adde... 62 6e-008
gb|DR093057.1|DR093057 STRR1_5_F06.g1_A033 Stem Response Re... 62 6e-008
gb|DR096273.1|DR096273 STRR1_26_H05.g1_A033 Stem Response R... 62 6e-008
gb|DR096352.1|DR096352 STRR1_27_A07.g1_A033 Stem Response R... 62 6e-008
gb|DR100480.1|DR100480 STRR1_64_A12.g1_A033 Stem Response R... 62 6e-008
gb|DR102236.1|DR102236 STRR1_79_C04.g1_A033 Stem Response R... 62 6e-008
gb|DR120128.1|DR120128 RTMG1_27_E05.g2_A029 Roots minus mag... 62 6e-008
gb|DT636492.1|DT636492 EST1151423 Normalized pine embryo li... 62 6e-008
gb|U64891.1|PTU64891 Pinus taeda expansin mRNA, partial cds 62 6e-008
gb|U64893.1|PTU64893 Pinus taeda expansin mRNA, partial cds 62 6e-008
gb|U64892.1|PTU64892 Pinus taeda expansin mRNA, partial cds 62 6e-008
gb|CF668294.1|CF668294 RTCNT1_35_D04.g1_A029 Root control P... 60 2e-007
gb|CV035793.1|CV035793 RTNACL1_42_B01.g1_A029 Roots plus ad... 60 2e-007
gb|CV138360.1|CV138360 EST849569 Sequencing ESTs from loblo... 60 2e-007
gb|DR071171.1|DR071171 RTDK1_18_C12.b1_A029 Roots, dark Pin... 60 2e-007
gb|DR092307.1|DR092307 RTAL1_28_G05.b1_A029 Roots plus adde... 60 2e-007
gb|DR099166.1|DR099166 STRR1_53_C12.g1_A033 Stem Response R... 60 2e-007
gb|DR120161.1|DR120161 RTMG1_27_H07.g2_A029 Roots minus mag... 60 2e-007
gb|DT624311.1|DT624311 EST1158586 Sequencing ESTs from lobl... 60 2e-007
gb|CD020358.1|CD020358 NXNV061C04 Nsf Xylem Normal wood Ver... 58 9e-007
gb|CF476071.1|CF476071 RTWW2_16_D03.g1_A021 Well-watered lo... 58 9e-007
gb|CF479898.1|CF479898 RTWW3_12_H04.g1_A022 Well-watered lo... 58 9e-007
gb|CX649869.1|CX649869 COLD1_42_B01.b1_A029 Root cold Pinus... 58 9e-007
gb|DR070227.1|DR070227 RTDK1_12_C03.b1_A029 Roots, dark Pin... 58 9e-007
gb|DR098553.1|DR098553 STRR1_46_F12.b1_A033 Stem Response R... 58 9e-007
gb|U64889.1|PTU64889 Pinus taeda expansin mRNA, partial cds 58 9e-007
gb|BF777631.1|BF777631 NXSI_070_G06_F NXSI (Nsf Xylem Side ... 56 4e-006
gb|BQ700551.1|BQ700551 NXRV108_B09_F NXRV (Nsf Xylem Root w... 54 1e-005
gb|CD024349.1|CD024349 NXRV_040_D10_F NXRV (Nsf Xylem Root ... 54 1e-005
gb|CF400025.1|CF400025 RTWW1_2_C11.g1_A015 Well-watered lob... 54 1e-005
gb|CF477384.1|CF477384 RTWW3_7_A01.g1_A022 Well-watered lob... 54 1e-005
gb|CF477424.1|CF477424 RTWW3_7_B01.g1_A022 Well-watered lob... 54 1e-005
gb|CO367487.1|CO367487 RTK1_34_D03.g1_A029 Roots minus pota... 54 1e-005
gb|CX648930.1|CX648930 COLD1_31_H02.g1_A029 Root cold Pinus... 54 1e-005
gb|DR050310.1|DR050310 RTBOR1_22_D04.g1_A029 Roots plus add... 54 1e-005
gb|DR051834.1|DR051834 RTBOR1_32_E10.g1_A029 Roots plus add... 54 1e-005
gb|DR053875.1|DR053875 RTCA1_13_G12.g1_A029 Roots minus cal... 54 1e-005
gb|DR093671.1|DR093671 STRR1_9_E07.g1_A033 Stem Response Re... 54 1e-005
gb|DR120696.1|DR120696 RTMG1_31_G12.b1_A029 Roots minus mag... 54 1e-005
gb|DR162969.1|DR162969 RTFE1_23_E05.b1_A029 Roots minus iro... 54 1e-005
gb|DR168497.1|DR168497 RTPHOS1_25_G11.g1_A029 Roots minus p... 54 1e-005
gb|U64890.1|PTU64890 Pinus taeda expansin mRNA, partial cds 54 1e-005
gb|AF085330.1|AF085330 Pinus taeda expansin mRNA, complete cds 54 1e-005
gb|CF471926.1|CF471926 RTDS1_7_A08.g1_A015 Drought-stressed... 52 6e-005
gb|DR095411.1|DR095411 STRR1_20_G09.g1_A033 Stem Response R... 52 6e-005
gb|DR180723.1|DR180723 RTMNUT1_34_A06.g1_A029 Roots minus m... 52 6e-005
gb|DR011201.1|DR011201 HEAT1_4_E06.b1_A029 Root at 37 C for... 50 2e-004
gb|DR021085.1|DR021085 STRS1_42_F09.b1_A034 Shoot tip pitch... 50 2e-004
gb|DR047687.1|DR047687 RTBOR1_2_F07.g1_A029 Roots plus adde... 50 2e-004
gb|DR685073.1|DR685073 EST1075150 Normalized pine embryo li... 50 2e-004
gb|DT632636.1|DT632636 EST1147567 Normalized pine embryo li... 50 2e-004
gb|BX254474.1|BX254474 BX254474 Pinus pinaster differenciat... 48 0.001
gb|CF399941.1|CF399941 RTWW1_2_C11.b1_A015 Well-watered lob... 48 0.001
gb|CR393417.1|CR393417 CR393417 RN Pinus pinaster cDNA clon... 48 0.001
gb|CX650634.1|CX650634 COLD1_47_B12.b1_A029 Root cold Pinus... 48 0.001
gb|BF777814.1|BF777814 NXSI_076_A04_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BQ701324.1|BQ701324 NXSI_062_F01_F NXSI (Nsf Xylem Side ... 46 0.004
gb|CF471900.1|CF471900 RTDS1_7_A08.b1_A015 Drought-stressed... 46 0.004
gb|CF668214.1|CF668214 RTCNT1_35_D04.b1_A029 Root control P... 46 0.004
gb|CO367410.1|CO367410 RTK1_34_D03.b1_A029 Roots minus pota... 46 0.004
gb|CO368672.1|CO368672 RTK1_42_C07.b1_A029 Roots minus pota... 46 0.004
gb|CO368748.1|CO368748 RTK1_42_C07.g1_A029 Roots minus pota... 46 0.004
gb|CO369598.1|CO369598 RTK1_48_F01.b1_A029 Roots minus pota... 46 0.004
gb|CO369680.1|CO369680 RTK1_48_F01.g1_A029 Roots minus pota... 46 0.004
gb|DR050231.1|DR050231 RTBOR1_22_D04.b1_A029 Roots plus add... 46 0.004
gb|DR051762.1|DR051762 RTBOR1_32_E10.b1_A029 Roots plus add... 46 0.004
gb|DR096360.1|DR096360 STRR1_27_B05.g1_A033 Stem Response R... 46 0.004
gb|DR165660.1|DR165660 RTPHOS1_6_B10.g1_A029 Roots minus ph... 46 0.004
gb|DR683982.1|DR683982 EST1074058 Normalized pine embryo li... 46 0.004
gb|DR745029.1|DR745029 RTCU1_26_C03.g1_A029 Roots plus adde... 46 0.004
gb|DT631935.1|DT631935 EST1146866 Normalized pine embryo li... 46 0.004
gb|DT632413.1|DT632413 EST1147344 Normalized pine embryo li... 46 0.004
gb|AW290421.1|AW290421 NXNV020D02F Nsf Xylem Normal wood Ve... 44 0.014
gb|CD027081.1|CD027081 NXNV020D02 Nsf Xylem Normal wood Ver... 44 0.014
gb|DR010784.1|DR010784 HEAT1_1_F12.b1_A029 Root at 37 C for... 44 0.014
gb|DR684423.1|DR684423 EST1074500 Normalized pine embryo li... 44 0.014
gb|DR746394.1|DR746394 RTCU1_36_E04.g1_A029 Roots plus adde... 44 0.014
gb|AW011524.1|AW011524 ST21H02 Pine TriplEx shoot tip libra... 42 0.056
gb|BG039056.1|BG039056 NXSI_092_B09_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BM367687.1|BM367687 NXLV_053_B09_F NXLV (Nsf Xylem Late ... 42 0.056
gb|CO169500.1|CO169500 NDL1_7_B04.g1_A029 Needles control P... 42 0.056
gb|CX652556.1|CX652556 COLD1_59_H02.g1_A029 Root cold Pinus... 42 0.056
gb|DR071242.1|DR071242 RTDK1_18_C12.g1_A029 Roots, dark Pin... 42 0.056
gb|U64895.1|PTU64895 Pinus taeda expansin mRNA, partial cds 42 0.056
gb|BE762031.1|BE762031 NXCI_076_B10_F NXCI (Nsf Xylem Compr... 40 0.22
gb|BF778581.1|BF778581 NXSI_088_D02_F NXSI (Nsf Xylem Side ... 40 0.22
gb|CO166169.1|CO166169 FLD1_59_G05.g1_A029 Root flooded Pin... 40 0.22
gb|CO197560.1|CO197560 GEO1_7_H02.b1_A029 Root gravitropism... 40 0.22
gb|CO200976.1|CO200976 RTCNT2_2_G03.g1_A029 Root control 2 ... 40 0.22
gb|CO362158.1|CO362158 RTK1_1_E05.g1_A029 Roots minus potas... 40 0.22
gb|CO362167.1|CO362167 RTK1_1_F05.g1_A029 Roots minus potas... 40 0.22
gb|CX646780.1|CX646780 COLD1_11_B06.g1_A029 Root cold Pinus... 40 0.22
gb|CX650764.1|CX650764 COLD1_48_A05.b1_A029 Root cold Pinus... 40 0.22
gb|CX713463.1|CX713463 RTPQ1_9_C04.g1_A032 Roots treated wi... 40 0.22
gb|DR023285.1|DR023285 STRS1_56_D02.g1_A034 Shoot tip pitch... 40 0.22
gb|DR072178.1|DR072178 RTDK1_24_C09.g1_A029 Roots, dark Pin... 40 0.22
gb|DR090533.1|DR090533 RTAL1_15_E12.g1_A029 Roots plus adde... 40 0.22
gb|DR100599.1|DR100599 STRR1_65_E02.g1_A033 Stem Response R... 40 0.22
gb|DR113034.1|DR113034 RTS1_32_B12.g1_A029 Roots minus sulf... 40 0.22
gb|DR119250.1|DR119250 RTMG1_22_C11.b1_A029 Roots minus mag... 40 0.22
gb|DR119331.1|DR119331 RTMG1_22_C11.g1_A029 Roots minus mag... 40 0.22
gb|DR163422.1|DR163422 RTFE1_42_G07.g1_A029 Roots minus iro... 40 0.22
gb|DR689717.1|DR689717 EST1079803 Normalized pine embryo li... 40 0.22
gb|DT635613.1|DT635613 EST1150544 Normalized pine embryo li... 40 0.22
>gb|BF610570.1|BF610570 NXSI_060_B07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_060_B07 5' similar to Arabidopsis thaliana
sequence At2g03090 expansin like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 357
Score = 91.7 bits (46), Expect = 7e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || |||
Sbjct: 80 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggc 139
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || |||||||||
Sbjct: 140 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcactcttcaac 199
Query: 323 aacggcctcagctgcggcgcctgctt 348
|| || ||||||||||| ||||||||
Sbjct: 200 aatggtctcagctgcggagcctgctt 225
>gb|CO197872.1|CO197872 GEO1_9_E12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_9_E12_A029 5', mRNA sequence
Length = 812
Score = 91.7 bits (46), Expect = 7e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || |||
Sbjct: 180 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggc 239
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || |||||||||
Sbjct: 240 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcactcttcaac 299
Query: 323 aacggcctcagctgcggcgcctgctt 348
|| || ||||||||||| ||||||||
Sbjct: 300 aatggtctcagctgcggagcctgctt 325
Score = 58.0 bits (29), Expect = 9e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 711 tgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgggcaggccctgt 770
|||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||| |
Sbjct: 676 tgtcccgcaactggggccagaattggcagagcaacagttacctcaacgggcagagcctct 735
Query: 771 ccttccgcgtcaccaccagcgacgg 795
||||| |||||||||||||||||
Sbjct: 736 ccttcaaggtcaccaccagcgacgg 760
>gb|CX649938.1|CX649938 COLD1_42_B01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_42_B01_A029 5', mRNA sequence
Length = 862
Score = 91.7 bits (46), Expect = 7e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || |||
Sbjct: 163 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggc 222
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || |||||||||
Sbjct: 223 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcactcttcaac 282
Query: 323 aacggcctcagctgcggcgcctgctt 348
|| || ||||||||||| ||||||||
Sbjct: 283 aatggtctcagctgcggagcctgctt 308
Score = 58.0 bits (29), Expect = 9e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 711 tgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgggcaggccctgt 770
|||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||| |
Sbjct: 659 tgtcccgcaactggggccagaattggcagagcaacagttacctcaacgggcagagcctct 718
Query: 771 ccttccgcgtcaccaccagcgacgg 795
||||| |||||||||||||||||
Sbjct: 719 ccttcaaggtcaccaccagcgacgg 743
>gb|DR070312.1|DR070312 RTDK1_12_C03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_C03_A029 5', mRNA sequence
Length = 710
Score = 91.7 bits (46), Expect = 7e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || |||
Sbjct: 102 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggc 161
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || |||||||||
Sbjct: 162 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcactcttcaac 221
Query: 323 aacggcctcagctgcggcgcctgctt 348
|| || ||||||||||| ||||||||
Sbjct: 222 aatggtctcagctgcggagcctgctt 247
Score = 58.0 bits (29), Expect = 9e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 711 tgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgggcaggccctgt 770
|||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||| |
Sbjct: 598 tgtcccgcaactggggccagaattggcagagcaacagttacctcaacgggcagagcctct 657
Query: 771 ccttccgcgtcaccaccagcgacgg 795
||||| |||||||||||||||||
Sbjct: 658 ccttcaaagtcaccaccagcgacgg 682
>gb|DR181356.1|DR181356 RTMNUT1_38_A01.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_38_A01_A029 5', mRNA sequence
Length = 765
Score = 91.7 bits (46), Expect = 7e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || |||
Sbjct: 139 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggc 198
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || |||||||||
Sbjct: 199 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcactcttcaac 258
Query: 323 aacggcctcagctgcggcgcctgctt 348
|| || ||||||||||| ||||||||
Sbjct: 259 aatggtctcagctgcggagcctgctt 284
Score = 58.0 bits (29), Expect = 9e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 711 tgtcgcgcaactggggccagaactggcagagcaacacgctcctggacgggcaggccctgt 770
|||| ||||||||||||||||| ||||||||||||| ||| |||||||| ||| |
Sbjct: 635 tgtcccgcaactggggccagaattggcagagcaacagttacctcaacgggcagagcctct 694
Query: 771 ccttccgcgtcaccaccagcgacgg 795
||||| |||||||||||||||||
Sbjct: 695 ccttcaaggtcaccaccagcgacgg 719
>gb|BE582419.1|BE582419 NXCI_033_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_033_B08 5' similar to Arabidopsis
thaliana sequence At2g03090 expansin like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 456
Score = 87.7 bits (44), Expect = 1e-015
Identities = 119/144 (82%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || |||
Sbjct: 156 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggc 215
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || |||||||||
Sbjct: 216 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcactcttcaac 275
Query: 323 aacggcctcagctgcggcgcctgc 346
|| || ||||||||||| ||||||
Sbjct: 276 aatggtctcagctgcggagcctgc 299
>gb|CX651774.1|CX651774 COLD1_54_E06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_E06_A029 5', mRNA sequence
Length = 397
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || |||
Sbjct: 126 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggc 185
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || |||||||||
Sbjct: 186 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcactcttcaac 245
Query: 323 aacggcctcagctgcggcgcctgctt 348
| || ||||||||||| ||||||||
Sbjct: 246 tatggtctcagctgcggagcctgctt 271
>gb|BX250040.1|BX250040 BX250040 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP031G01, mRNA sequence
Length = 608
Score = 75.8 bits (38), Expect = 4e-012
Identities = 119/146 (81%)
Strand = Plus / Plus
Query: 203 gccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggc 262
||||||||||| || || || ||||| || || || ||||| || |||||||| || ||
Sbjct: 156 gccaccttctatggagggggagatgcttctggtacaatgggaggtgcgtgtggttatggt 215
Query: 263 aacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctcttcaac 322
|| || ||||||||||| || ||||||| ||| || || |||||||| || || ||||||
Sbjct: 216 aatctatacagccagggatatggcaccagcactgctgctctgagcactgcacttttcaac 275
Query: 323 aacggcctcagctgcggcgcctgctt 348
|| || ||||||||||| ||||||||
Sbjct: 276 aatggtctcagctgcggagcctgctt 301
>gb|DR097316.1|DR097316 STRR1_33_H05.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_H05_A033 5', mRNA sequence
Length = 794
Score = 71.9 bits (36), Expect = 6e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 701 tggcaggccctgtcgcgcaactggggccagaactggcagagcaacacgctcctggacggg 760
||||||||| |||| ||||||||||| ||||||||||| |||||| | |||| ||||
Sbjct: 320 tggcaggccatgtcacgcaactggggacagaactggcaaagcaactcttacctgaacgga 261
Query: 761 caggccctgtccttccgcgtcaccaccagcgacggc 796
||| ||| ||||||| ||||||||||||||||||
Sbjct: 260 cagagcctatccttccaagtcaccaccagcgacggc 225
Score = 48.1 bits (24), Expect = 0.001
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 416 gccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgcaa 474
|||||||||||||||||||| ||||| || || || |||| ||||||| ||||||||
Sbjct: 602 gccaccaacttctgcccgccaaacaatgctcttcccaacgacaacggcgggtggtgcaa 544
Score = 42.1 bits (21), Expect = 0.056
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 580 gaagggcggcatacgtttcaccatcaacggccactcctacttcaa 624
|||||| || || |||||||||||||| |||||| | ||||||||
Sbjct: 438 gaagggaggaattcgtttcaccatcaatggccacgcatacttcaa 394
>gb|CF663902.1|CF663902 RTCNT1_5_H12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_H12_A029 5', mRNA sequence
Length = 699
Score = 69.9 bits (35), Expect = 2e-010
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 224 gatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtac 283
||||| || ||||| ||||| ||||||||||||||||| || || ||||||| || ||
Sbjct: 217 gatgcttctggcacaatgggaggggcgtgtgggtacggtaatcttaacagccaaggctat 276
Query: 284 ggcaccaacacggcggcgctgagcacggcgctcttcaacaacggcctcagctgcggcgcc 343
|| |||||||| || || ||||||| ||||| |||||| | || ||||||||||| |||
Sbjct: 277 ggaaccaacactgctgctttgagcactgcgcttttcaacgatggactcagctgcggagcc 336
Query: 344 tgc 346
|||
Sbjct: 337 tgc 339
Score = 54.0 bits (27), Expect = 1e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 413 acggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggctggtgc 472
||||| || |||||||||||||| |||||||| ||||| |||| |||| || ||||||
Sbjct: 397 acggctactaacttctgcccgccaaacaacgctctccccaacgacaacggtggatggtgc 456
Query: 473 aacccgccgc 482
||||| ||||
Sbjct: 457 aacccaccgc 466
Score = 46.1 bits (23), Expect = 0.004
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 580 gaagggcggcatacgtttcaccatcaacggccactcctacttcaacctggt 630
|||||| || || ||||||||| | || |||||||| ||||||||||||||
Sbjct: 564 gaagggaggaattcgtttcaccgtgaatggccactcatacttcaacctggt 614
>gb|U64894.1|PTU64894 Pinus taeda expansin mRNA, partial cds
Length = 344
Score = 69.9 bits (35), Expect = 2e-010
Identities = 122/151 (80%)
Strand = Plus / Plus
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtggg 256
||||| ||||| |||||||| || | ||||| || || || ||||| ||||| ||||||
Sbjct: 145 gctcatgccactttctacggtggtagtgatgcttctgggacaatgggtggggcctgtggg 204
Query: 257 tacggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcgctc 316
||||| || || |||||||| || || || |||||||| || || ||||||| |||||
Sbjct: 205 tacggtaatctttacagccaaggctatggaaccaacactgctgctttgagcactgcgctt 264
Query: 317 ttcaacaacggcctcagctgcggcgcctgct 347
|||||||| ||||| ||||| || |||||||
Sbjct: 265 ttcaacaatggccttagctgtggagcctgct 295
>gb|CV144435.1|CV144435 EST855644 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID557 5' end, mRNA sequence
Length = 769
Score = 67.9 bits (34), Expect = 1e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 215 ggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctctacagc 274
|||||| |||||||||| ||||| |||||||| ||||| || ||||| ||||| || |||
Sbjct: 152 ggcggcagcgatgcgtcgggcacaatgggcggtgcgtgcggatacggtaacctatatagc 211
Query: 275 caggggtacggcaccaacacggcggcgctgagcacggcgctcttcaacaa 324
|| || || || || ||||| || || ||||||||||| || ||||||||
Sbjct: 212 caaggctatggaacgaacactgcagctctgagcacggcacttttcaacaa 261
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 711 tgtcgcgcaactggggccagaactggcagagcaac 745
|||| ||||||||||| ||||| ||||||||||||
Sbjct: 642 tgtcccgcaactggggacagaattggcagagcaac 676
Score = 44.1 bits (22), Expect = 0.014
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 596 ttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgtggaaggcgcc 655
||||| ||||| || |||||||||||||| ||||||| | |||||||| | ||||||
Sbjct: 530 ttcacgatcaatgggcactcctacttcaatttggtactcattaccaacgtaggaggcgca 589
Query: 656 ggcgacgtgcacgcggtt 673
||||| ||| | ||||||
Sbjct: 590 ggcgatgtggaggcggtt 607
>gb|DR010861.1|DR010861 HEAT1_1_F12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_F12_A029 5', mRNA sequence
Length = 733
Score = 67.9 bits (34), Expect = 1e-009
Identities = 124/154 (80%)
Strand = Plus / Plus
Query: 194 tcggctcacgccaccttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgt 253
|||||||| ||||| |||||||| ||| | |||||||| || || ||||| ||||| ||
Sbjct: 92 tcggctcatgccacattctacggtggcagtgatgcgtctgggacaatgggaggggcctgc 151
Query: 254 gggtacggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacggcg 313
|| ||||| || || |||||||| || || || ||| | || || ||||| ||||| ||
Sbjct: 152 ggatacgggaatctgtacagccaaggttatggaaccgatactgctgcgcttagcactgct 211
Query: 314 ctcttcaacaacggcctcagctgcggcgcctgct 347
|| ||||||||||| |||||||||| |||||||
Sbjct: 212 ctgttcaacaacgggttcagctgcggagcctgct 245
Score = 44.1 bits (22), Expect = 0.014
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 711 tgtcgcgcaactggggccagaactggcagagcaa 744
|||| ||||||||||| ||||||||||| |||||
Sbjct: 597 tgtcacgcaactggggacagaactggcaaagcaa 630
>gb|DR019211.1|DR019211 STRS1_28_B06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_B06_A034 5', mRNA sequence
Length = 869
Score = 67.9 bits (34), Expect = 1e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 251 tgtgggtacggcaacctctacagccaggggtacggcaccaacacggcggcgctgagcacg 310
|||||||| || || || |||||||| || || ||| ||||||| || || |||||||||
Sbjct: 226 tgtgggtatggaaatctatacagccaaggctatggcgccaacacagcagctctgagcacg 285
Query: 311 gcgctcttcaacaacggcctcagctgcggcgcctgctt 348
|| || |||||||| ||||||||||| || ||||||||
Sbjct: 286 gcccttttcaacaatggcctcagctgtggagcctgctt 323
>gb|DT624714.1|DT624714 EST1159049 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAI31 5' end, mRNA sequence
Length = 844
Score = 67.9 bits (34), Expect = 1e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 215 ggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctctacagc 274
|||||| |||||||||| ||||| |||||||| ||||| || ||||| ||||| || |||
Sbjct: 152 ggcggcagcgatgcgtcgggcacaatgggcggtgcgtgcggatacggtaacctatatagc 211
Query: 275 caggggtacggcaccaacacggcggcgctgagcacggcgctcttcaacaa 324
|| || || || || ||||| || || ||||||||||| || ||||||||
Sbjct: 212 caaggctatggaacgaacactgcagctctgagcacggcacttttcaacaa 261
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 711 tgtcgcgcaactggggccagaactggcagagcaac 745
|||| ||||||||||| ||||| ||||||||||||
Sbjct: 642 tgtcccgcaactggggacagaattggcagagcaac 676
Score = 44.1 bits (22), Expect = 0.014
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 596 ttcaccatcaacggccactcctacttcaacctggtactggtgaccaacgtggaaggcgcc 655
||||| ||||| || |||||||||||||| ||||||| | |||||||| | ||||||
Sbjct: 530 ttcacgatcaatgggcactcctacttcaatttggtactcattaccaacgtaggaggcgca 589
Query: 656 ggcgacgtgcacgcggtt 673
||||| ||| | ||||||
Sbjct: 590 ggcgatgtggaggcggtt 607
>gb|BF517063.1|BF517063 NXSI_008_G03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_008_G03 5' similar to Arabidopsis thaliana
sequence At2g03090 expansin like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 462
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 144 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 203
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 204 accgcggctctgagcac 220
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 324 aacttctgcccgcccaacaatgcgct 349
>gb|BF518096.1|BF518096 NXSI_030_H10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_030_H10 5' similar to Arabidopsis thaliana
sequence At1g26770 expansin 10 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 122 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 181
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 182 accgcggctctgagcac 198
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 302 aacttctgcccgcccaacaatgcgct 327
>gb|BF609490.1|BF609490 NXSI_043_C03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_043_C03 5' similar to Arabidopsis thaliana
sequence At2g03090 expansin like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 516
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 33 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 92
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 93 accgcggctctgagcac 109
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 213 aacttctgcccgcccaacaatgcgct 238
>gb|BQ654413.1|BQ654413 NXRV080_A02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV080_A02 5' similar to Arabidopsis thaliana
sequence At1g26770 expansin 10 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 487
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 157 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 216
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 217 accgcggctctgagcac 233
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 337 aacttctgcccgcccaacaatgcgct 362
>gb|CF391855.1|CF391855 RTDR3_10_C05.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_C05_A022 5', mRNA
sequence
Length = 765
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 149 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 208
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 209 accgcggctctgagcac 225
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 329 aacttctgcccgcccaacaatgcgct 354
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
||||||||||| || |||||||||||||
Sbjct: 623 aactggggccaaaattggcagagcaaca 650
>gb|CN784348.1|CN784348 EST783039 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAK45 5' end, mRNA sequence
Length = 778
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 128 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 187
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 188 accgcggctctgagcac 204
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 308 aacttctgcccgcccaacaatgcgct 333
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
||||||||||| || |||||||||||||
Sbjct: 602 aactggggccaaaattggcagagcaaca 629
>gb|DR688987.1|DR688987 EST1079073 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC87 3' end, mRNA sequence
Length = 772
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 182 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 241
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 242 accgcggctctgagcac 258
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 581 aagggcggcatacgtttcaccatcaacggccactcctacttcaacctggtactggtgacc 640
|||||||| || ||||||||||| || ||||| || |||||||| ||||| || | |||
Sbjct: 521 aagggcggaattcgtttcaccattaatggccattcgtacttcaatctggtcctcatcacc 580
Query: 641 aacgtggaaggcgccggcgacgt 663
||||| | || |||||||||||
Sbjct: 581 aacgttggtggagccggcgacgt 603
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 362 aacttctgcccgcccaacaatgcgct 387
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
||||||||||| || |||||||||||||
Sbjct: 656 aactggggccaaaattggcagagcaaca 683
>gb|DR692635.1|DR692635 EST1082723 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADO50 3' end, mRNA sequence
Length = 902
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 185 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 244
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 245 accgcggctctgagcac 261
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 365 aacttctgcccgcccaacaatgcgct 390
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
||||||||||| || |||||||||||||
Sbjct: 659 aactggggccaaaattggcagagcaaca 686
>gb|DT625757.1|DT625757 EST1157681 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA338 5' end, mRNA sequence
Length = 817
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 233 ggcaccatgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaac 292
||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||||
Sbjct: 128 ggcacaatgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaac 187
Query: 293 acggcggcgctgagcac 309
|| ||||| ||||||||
Sbjct: 188 accgcggctctgagcac 204
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 308 aacttctgcccgcccaacaatgcgct 333
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
||||||||||| || |||||||||||||
Sbjct: 602 aactggggccaaaattggcagagcaaca 629
>gb|AA556812.1|AA556812 654 Loblolly pine C Pinus taeda cDNA clone 6C12G, mRNA sequence
Length = 676
Score = 63.9 bits (32), Expect = 2e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 210 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 269
Query: 269 tacagccagggg 280
||||||||||||
Sbjct: 270 tacagccagggg 281
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaac 439
|||| ||||||||||| |||||||| ||||||
Sbjct: 407 tggtcacggccaccaatttctgccctcccaac 438
>gb|AA556861.1|AA556861 703 Loblolly pine C Pinus taeda cDNA clone 6C7F, mRNA sequence
Length = 593
Score = 63.9 bits (32), Expect = 2e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 205 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 264
Query: 269 tacagccagggg 280
||||||||||||
Sbjct: 265 tacagccagggg 276
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaac 439
|||| ||||||||||| |||||||| ||||||
Sbjct: 402 tggtcacggccaccaatttctgccctcccaac 433
>gb|AA556399.1|AA556399 254 Loblolly pine C Pinus taeda cDNA clone 1C2B, mRNA sequence
Length = 702
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 201 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 260
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 261 tacagccaggg 271
>gb|AW290022.1|AW290022 NXNV009F01F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV009F01 5', mRNA sequence
Length = 557
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 210 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 269
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 270 tacagccaggg 280
>gb|AW587662.1|AW587662 ST63B06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST63B06, mRNA sequence
Length = 481
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 232 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 291
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 292 tacagccaggg 302
>gb|AW697618.1|AW697618 ST61B04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST61B04, mRNA sequence
Length = 363
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 128 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 187
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 188 tacagccaggg 198
>gb|BX251144.1|BX251144 BX251144 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP045H02 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 662
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 213 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 272
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 273 tacagccaggg 283
Score = 48.1 bits (24), Expect = 0.001
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | ||||| || |||| | |||||||
Sbjct: 409 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 468
Query: 468 ggtgcaa 474
|||||||
Sbjct: 469 ggtgcaa 475
>gb|BX251561.1|BX251561 BX251561 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP051C06 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 584
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 213 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 272
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 273 tacagccaggg 283
Score = 48.1 bits (24), Expect = 0.001
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | ||||| || |||| | |||||||
Sbjct: 409 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 468
Query: 468 ggtgcaa 474
|||||||
Sbjct: 469 ggtgcaa 475
>gb|BX251613.1|BX251613 BX251613 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP053A05 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 632
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 189 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 248
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 249 tacagccaggg 259
Score = 48.1 bits (24), Expect = 0.001
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | ||||| || |||| | |||||||
Sbjct: 385 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 444
Query: 468 ggtgcaa 474
|||||||
Sbjct: 445 ggtgcaa 451
>gb|BX253271.1|BX253271 BX253271 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP080E08 similar to POLLEN ALLERGEN, mRNA
sequence
Length = 673
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 218 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 277
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 278 tacagccaggg 288
Score = 48.1 bits (24), Expect = 0.001
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | ||||| || |||| | |||||||
Sbjct: 414 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 473
Query: 468 ggtgcaa 474
|||||||
Sbjct: 474 ggtgcaa 480
>gb|AW698040.1|AW698040 NXNV_078_B06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_078_B06 5' similar to Arabidopsis thaliana
sequence At5g02260 expansin precursor - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 303
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 116 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 175
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 176 tacagccaggg 186
>gb|BE761955.1|BE761955 NXCI_075_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_075_C03 5' similar to Arabidopsis
thaliana sequence At2g39700 putative expansin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 392
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 210 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 269
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 270 tacagccaggg 280
>gb|BF049828.1|BF049828 NXCI_111_D09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_111_D09 5' similar to Arabidopsis
thaliana sequence At2g37640 putative expansin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 452
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 205 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 264
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 265 tacagccaggg 275
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaac 439
|||| ||||||||||| |||||||| ||||||
Sbjct: 401 tggtcacggccaccaatttctgccctcccaac 432
>gb|BF186130.1|BF186130 NXCI_133_A11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_133_A11 5' similar to Arabidopsis
thaliana sequence At5g02260 expansin precursor - like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 378
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 204 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 263
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 264 tacagccaggg 274
>gb|BF517775.1|BF517775 NXSI_031_A12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_031_A12 5' similar to Arabidopsis thaliana
sequence At2g39700 putative expansin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 459
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 208 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 267
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 268 tacagccaggg 278
>gb|BF609532.1|BF609532 NXSI_043_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_043_G01 5' similar to Arabidopsis thaliana
sequence At2g28950 putative expansin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 517
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 176 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 235
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 236 tacagccaggg 246
Score = 40.1 bits (20), Expect = 0.22
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaac 439
|||| ||||||||||| |||||||| ||||||
Sbjct: 372 tggtcacggccaccaatttctgccctcccaac 403
>gb|BF609736.1|BF609736 NXSI_048_G12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_048_G12 5' similar to Arabidopsis thaliana
sequence At5g02260 expansin precursor - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 319
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 145 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 204
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 205 tacagccaggg 215
>gb|BM427751.1|BM427751 NXRV_002_G05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_002_G05 5' similar to Arabidopsis thaliana
sequence At1g26770 expansin 10 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 631
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 239 atgggcggggcgtgtgggtacggcaacctctacagccaggggtacggcaccaacacggcg 298
|||||||| || ||||| || ||||| || ||||||||||| ||||| |||||||| |||
Sbjct: 174 atgggcggtgcttgtggttatggcaatctgtacagccagggctacggtaccaacaccgcg 233
Query: 299 gcgctgagcac 309
|| ||||||||
Sbjct: 234 gctctgagcac 244
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 aacttctgcccgcccaacaacgcgct 447
|||||||||||||||||||| |||||
Sbjct: 348 aacttctgcccgcccaacaatgcgct 373
>gb|BQ635086.1|BQ635086 NXRV076_G12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV076_G12 5' similar to Arabidopsis thaliana
sequence At5g02260 expansin precursor - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 371
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 157 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 216
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 217 tacagccaggg 227
>gb|BQ654617.1|BQ654617 NXRV083_A04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV083_A04 5' similar to Arabidopsis thaliana
sequence At5g02260 expansin precursor - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 329
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 135 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 194
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 195 tacagccaggg 205
>gb|CD026679.1|CD026679 NXNV009F01 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV009F01 5' similar to Arabidopsis thaliana sequence
At2g28950 putative expansin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 557
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 210 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 269
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 270 tacagccaggg 280
>gb|CF386013.1|CF386013 RTDR1_7_F11.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_7_F11_A015 5', mRNA
sequence
Length = 773
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 193 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 252
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 253 tacagccaggg 263
Score = 40.1 bits (20), Expect = 0.22
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | || || || |||| | |||||||
Sbjct: 389 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 448
Query: 468 ggtgcaa 474
|||||||
Sbjct: 449 ggtgcaa 455
>gb|CF391890.1|CF391890 RTDR3_10_G01.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_G01_A022 5', mRNA
sequence
Length = 746
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 199 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 258
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 259 tacagccaggg 269
Score = 40.1 bits (20), Expect = 0.22
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | || || || |||| | |||||||
Sbjct: 395 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 454
Query: 468 ggtgcaa 474
|||||||
Sbjct: 455 ggtgcaa 461
>gb|CF479851.1|CF479851 RTWW3_12_D07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D07_A022 5', mRNA sequence
Length = 630
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 157 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 216
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 217 tacagccaggg 227
Score = 40.1 bits (20), Expect = 0.22
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | || || || |||| | |||||||
Sbjct: 353 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 412
Query: 468 ggtgcaa 474
|||||||
Sbjct: 413 ggtgcaa 419
>gb|CF668487.1|CF668487 RTCNT1_36_F12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_F12_A029 5', mRNA sequence
Length = 755
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 175 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 234
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 235 tacagccaggg 245
Score = 40.1 bits (20), Expect = 0.22
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | || || || |||| | |||||||
Sbjct: 371 tggtcacggccaccaatttctgccctcccaactatgctctgcctaacgacaatggcggct 430
Query: 468 ggtgcaa 474
|||||||
Sbjct: 431 ggtgcaa 437
>gb|BX682844.1|BX682844 BX682844 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122F05 similar to Alpha-expansin, mRNA
sequence
Length = 658
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 209 ttctacggcggcggcgatgcgtccggcaccatgggcggggcgtgtgggtacggcaacctc 268
|||||||| || ||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct: 215 ttctacggtggaagcgatgcctcgggcaccatggggggtgcttgtgggtatggcaacctg 274
Query: 269 tacagccaggg 279
|||||||||||
Sbjct: 275 tacagccaggg 285
Score = 48.1 bits (24), Expect = 0.001
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 408 tggtgacggccaccaacttctgcccgcccaacaacgcgctcccntccgacgacggcggct 467
|||| ||||||||||| |||||||| |||||| | ||||| || |||| | |||||||
Sbjct: 411 tggtcacggccaccaatttctgccctcccaactatgcgctgcctaacgacaatggcggct 470
Query: 468 ggtgcaa 474
|||||||
Sbjct: 471 ggtgcaa 477
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 103,222
Number of Sequences: 355925
Number of extensions: 103222
Number of successful extensions: 27563
Number of sequences better than 0.5: 169
Number of HSP's better than 0.5 without gapping: 163
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 27084
Number of HSP's gapped (non-prelim): 482
length of query: 1294
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1275
effective length of database: 210,514,662
effective search space: 268406194050
effective search space used: 268406194050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)