BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493535.2.1
         (580 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF777968.1|BF777968  NXSI_079_D08_F NXSI (Nsf Xylem Side ...    40   0.097
gb|CO370053.1|CO370053  RTK1_65_E06.b1_A029 Roots minus pota...    38   0.39 

>gb|BF777968.1|BF777968 NXSI_079_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_079_D08 5', mRNA sequence
          Length = 511

 Score = 40.1 bits (20), Expect = 0.097
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 cgcctccgccaccgccaccg 420
           ||||||||||||||||||||
Sbjct: 27  cgcctccgccaccgccaccg 46



>gb|CO370053.1|CO370053 RTK1_65_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
           RTK1_65_E06_A029 3', mRNA sequence
          Length = 848

 Score = 38.2 bits (19), Expect = 0.39
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 277 agcagcggcggcggaagccgcggcacc 303
           |||||||||||||| ||| ||||||||
Sbjct: 798 agcagcggcggcggcagcagcggcacc 824



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,712
Number of Sequences: 355925
Number of extensions: 68712
Number of successful extensions: 23214
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23204
Number of HSP's gapped (non-prelim): 10
length of query: 580
length of database: 217,277,237
effective HSP length: 19
effective length of query: 561
effective length of database: 210,514,662
effective search space: 118098725382
effective search space used: 118098725382
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)