BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV033248.1|CV033248 RTNACL1_33_F11.b1_A029 Roots plus ad... 48 7e-004
gb|DR048149.1|DR048149 RTBOR1_6_H08.g2_A029 Roots plus adde... 48 7e-004
gb|CF476942.1|CF476942 RTWW3_4_A12.g1_A022 Well-watered lob... 44 0.012
gb|CF670865.1|CF670865 RTCNT1_53_C11.b1_A029 Root control P... 44 0.012
gb|DR097532.1|DR097532 STRR1_35_G05.b1_A033 Stem Response R... 44 0.012
gb|DR097603.1|DR097603 STRR1_35_G05.g4_A033 Stem Response R... 44 0.012
gb|DR109493.1|DR109493 RTS1_2_H09.b1_A029 Roots minus sulfu... 44 0.012
gb|DR109494.1|DR109494 RTS1_2_H10.b1_A029 Roots minus sulfu... 44 0.012
gb|DR167078.1|DR167078 RTPHOS1_16_B05.g1_A029 Roots minus p... 44 0.012
gb|DR388572.1|DR388572 RTHG1_29_C11.b1_A029 Roots plus adde... 44 0.012
gb|DR683885.1|DR683885 EST1073961 Normalized pine embryo li... 44 0.012
gb|DR684478.1|DR684478 EST1074555 Normalized pine embryo li... 44 0.012
gb|DT631782.1|DT631782 EST1146713 Normalized pine embryo li... 44 0.012
gb|AF324782.1| Pinus taeda clone PtTX4093 microsatellite se... 44 0.012
gb|AF441567.1| Pinus taeda PtTX4138 microsatellite sequence 44 0.012
gb|AA557046.1|AA557046 888 Loblolly pine N Pinus taeda cDNA... 40 0.18
gb|AW225995.1|AW225995 ST76B04 Pine TriplEx shoot tip libra... 40 0.18
gb|CD025693.1|CD025693 NXSI_074_G07_F NXSI (Nsf Xylem Side ... 40 0.18
gb|CF396012.1|CF396012 RTDS2_20_G08.g1_A021 Drought-stresse... 40 0.18
gb|CF477801.1|CF477801 RTWW3_13_E02.b1_A022 Well-watered lo... 40 0.18
gb|CF663900.1|CF663900 RTCNT1_5_H10.g1_A029 Root control Pi... 40 0.18
gb|CF665520.1|CF665520 RTCNT1_16_B08.g1_A029 Root control P... 40 0.18
gb|CR392898.1|CR392898 CR392898 RN Pinus pinaster cDNA clon... 40 0.18
gb|CO159464.1|CO159464 FLD1_13_F06.g1_A029 Root flooded Pin... 40 0.18
gb|CO165026.1|CO165026 FLD1_51_G11.g1_A029 Root flooded Pin... 40 0.18
gb|CO365325.1|CO365325 RTK1_25_B03.b1_A029 Roots minus pota... 40 0.18
gb|CV143309.1|CV143309 EST854518 Sequencing ESTs from loblo... 40 0.18
gb|CV144516.1|CV144516 EST855725 Sequencing ESTs from loblo... 40 0.18
gb|CX650231.1|CX650231 COLD1_44_G10.b1_A029 Root cold Pinus... 40 0.18
gb|CX714860.1|CX714860 RTPQ1_27_D02.g1_A032 Roots treated w... 40 0.18
gb|DN460346.1|DN460346 EST956145 Sequencing ESTs from loblo... 40 0.18
gb|DN462250.1|DN462250 EST958049 Sequencing ESTs from loblo... 40 0.18
gb|DR013829.1|DR013829 HEAT1_21_F10.g1_A029 Root at 37 C fo... 40 0.18
gb|DR014855.1|DR014855 HEAT1_52_B10.b1_A029 Root at 37 C fo... 40 0.18
gb|DR014937.1|DR014937 HEAT1_52_B10.g1_A029 Root at 37 C fo... 40 0.18
gb|DR055862.1|DR055862 RTCA1_26_H12.b1_A029 Roots minus cal... 40 0.18
gb|DR101852.1|DR101852 STRR1_76_G01.b1_A033 Stem Response R... 40 0.18
gb|DR161650.1|DR161650 RTFE1_13_C10.b1_A029 Roots minus iro... 40 0.18
gb|DR163332.1|DR163332 RTFE1_42_G05.b1_A029 Roots minus iro... 40 0.18
gb|DR178832.1|DR178832 RTMNUT1_14_F08.b1_A029 Roots minus m... 40 0.18
gb|DR386190.1|DR386190 RTHG1_13_B06.g1_A029 Roots plus adde... 40 0.18
gb|DR388594.1|DR388594 RTHG1_29_F07.b1_A029 Roots plus adde... 40 0.18
gb|DT624611.1|DT624611 EST1158946 Sequencing ESTs from lobl... 40 0.18
gb|DT624642.1|DT624642 EST1158977 Sequencing ESTs from lobl... 40 0.18
gb|DT625427.1|DT625427 EST1159702 Sequencing ESTs from lobl... 40 0.18
gb|DT626974.1|DT626974 EST1160050 Sequencing ESTs from lobl... 40 0.18
emb|CR354486.1| Pinus pinaster SSR, clone PPA5B12 40 0.18
emb|CR377914.1| Pinus pinaster SSR, clone PPB3H02 40 0.18
>gb|CV033248.1|CV033248 RTNACL1_33_F11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_F11_A029 3', mRNA sequence
Length = 844
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 113 tcctgctcttcttcctcctcctccccctcctc 144
|||| ||||||||||||||||||| |||||||
Sbjct: 640 tcctcctcttcttcctcctcctcctcctcctc 671
>gb|DR048149.1|DR048149 RTBOR1_6_H08.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H08_A029 5', mRNA sequence
Length = 839
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 113 tcctgctcttcttcctcctcctccccctcctc 144
|||| ||||||||||||||||||| |||||||
Sbjct: 91 tcctcctcttcttcctcctcctcctcctcctc 60
>gb|CF476942.1|CF476942 RTWW3_4_A12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_4_A12_A022 5', mRNA sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 410 tcttcttcctcctcctcctcctcctc 385
>gb|CF670865.1|CF670865 RTCNT1_53_C11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_C11_A029 3', mRNA sequence
Length = 761
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 306 tcttcttcctcctcctcctcctcctc 331
>gb|DR097532.1|DR097532 STRR1_35_G05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_35_G05_A033 3', mRNA sequence
Length = 807
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 118 tcttcttcctcctcctcctcctcctc 93
>gb|DR097603.1|DR097603 STRR1_35_G05.g4_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_35_G05_A033 5', mRNA sequence
Length = 785
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 359 tcttcttcctcctcctcctcctcctc 334
>gb|DR109493.1|DR109493 RTS1_2_H09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_2_H09_A029 3', mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 212 tcttcttcctcctcctcctcctcctc 237
>gb|DR109494.1|DR109494 RTS1_2_H10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_2_H10_A029 3', mRNA sequence
Length = 791
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 387 tcttcttcctcctcctcctcctcctc 412
>gb|DR167078.1|DR167078 RTPHOS1_16_B05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_16_B05_A029 5', mRNA sequence
Length = 458
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 378 tcttcttcctcctcctcctcctcctc 353
>gb|DR388572.1|DR388572 RTHG1_29_C11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_C11_A029 3', mRNA sequence
Length = 816
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 118 tcttcttcctcctcctcctcctcctc 93
>gb|DR683885.1|DR683885 EST1073961 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAM44 3' end, mRNA sequence
Length = 863
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 453 tcttcttcctcctcctcctcctcctc 428
>gb|DR684478.1|DR684478 EST1074555 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAT15 3' end, mRNA sequence
Length = 787
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 454 tcttcttcctcctcctcctcctcctc 429
>gb|DT631782.1|DT631782 EST1146713 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFC62 3' end, mRNA sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 461 tcttcttcctcctcctcctcctcctc 436
>gb|AF324782.1| Pinus taeda clone PtTX4093 microsatellite sequence
Length = 429
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 203 tcttcttcctcctcctcctcctcctc 228
>gb|AF441567.1| Pinus taeda PtTX4138 microsatellite sequence
Length = 429
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 203 tcttcttcctcctcctcctcctcctc 228
>gb|AA557046.1|AA557046 888 Loblolly pine N Pinus taeda cDNA clone 6N11E, mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 169 tcctcctcctccccctcctc 188
>gb|AW225995.1|AW225995 ST76B04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST76B04, mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||||||||||||| ||||||||
Sbjct: 262 ctcctgctcttcttcttcctcctc 285
>gb|CD025693.1|CD025693 NXSI_074_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_074_G07 5', mRNA sequence
Length = 183
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 84 tcctcctcctccccctcctc 103
>gb|CF396012.1|CF396012 RTDS2_20_G08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_G08_A021 5', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||||||||||||| ||||||||
Sbjct: 501 ctcctgctcttcttcttcctcctc 524
>gb|CF477801.1|CF477801 RTWW3_13_E02.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_E02_A022 3', mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||| ||||||||||||||||||
Sbjct: 160 ctcctcctcttcttcctcctcctc 183
>gb|CF663900.1|CF663900 RTCNT1_5_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_H10_A029 5', mRNA sequence
Length = 192
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 190 tcctcctcctccccctcctc 171
>gb|CF665520.1|CF665520 RTCNT1_16_B08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_B08_A029 5', mRNA sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||| ||||
Sbjct: 389 tcttcttcctcctcctcctcctcgtcac 362
>gb|CR392898.1|CR392898 CR392898 RN Pinus pinaster cDNA clone RN49G02, mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccc 137
||||||||||||||||||||
Sbjct: 429 ctcttcttcctcctcctccc 410
>gb|CO159464.1|CO159464 FLD1_13_F06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_13_F06_A029 5', mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||||||||| |||||||
Sbjct: 86 ttcttcctcctcctcctcctcctc 63
>gb|CO165026.1|CO165026 FLD1_51_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_51_G11_A029 5', mRNA sequence
Length = 390
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||||||||| |||||||
Sbjct: 334 ttcttcctcctcctcctcctcctc 311
>gb|CO365325.1|CO365325 RTK1_25_B03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B03_A029 3', mRNA sequence
Length = 273
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 10 tcctcctcctccccctcctc 29
>gb|CV143309.1|CV143309 EST854518 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPICR35 5' end, mRNA sequence
Length = 403
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 397 tcctcctcctccccctcctc 378
>gb|CV144516.1|CV144516 EST855725 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID664 5' end, mRNA sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||||||||| |||||||
Sbjct: 306 ttcttcctcctcctcctcctcctc 283
>gb|CX650231.1|CX650231 COLD1_44_G10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_G10_A029 3', mRNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 123 cttcctcctcctccccctcctcac 146
||||||||||| ||||||||||||
Sbjct: 500 cttcctcctcccccccctcctcac 477
>gb|CX714860.1|CX714860 RTPQ1_27_D02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_27_D02_A032 5', mRNA sequence
Length = 229
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||| |||||||||||||
Sbjct: 33 ttcttcctccccctccccctcctc 56
>gb|DN460346.1|DN460346 EST956145 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHX47 5' end, mRNA sequence
Length = 887
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||||||||| |||||||
Sbjct: 615 ttcttcctcctcctcctcctcctc 592
>gb|DN462250.1|DN462250 EST958049 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIK11 5' end, mRNA sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 251 tcctcctcctccccctcctc 232
>gb|DR013829.1|DR013829 HEAT1_21_F10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_21_F10_A029 5', mRNA sequence
Length = 231
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 222 tcctcctcctccccctcctc 203
>gb|DR014855.1|DR014855 HEAT1_52_B10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_B10_A029 3', mRNA sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||| ||||
Sbjct: 145 tcttcttcctcctcctcctcctcgtcac 118
>gb|DR014937.1|DR014937 HEAT1_52_B10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_B10_A029 5', mRNA sequence
Length = 825
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||| ||||
Sbjct: 426 tcttcttcctcctcctcctcctcgtcac 399
>gb|DR055862.1|DR055862 RTCA1_26_H12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_H12_A029 3', mRNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||| ||||||||||||||||||
Sbjct: 193 ctcctcctcttcttcctcctcctc 216
>gb|DR101852.1|DR101852 STRR1_76_G01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_G01_A033 3', mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctcac 146
|||||||||||||||||| |||| ||||
Sbjct: 60 tcttcttcctcctcctcctcctcgtcac 33
>gb|DR161650.1|DR161650 RTFE1_13_C10.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_13_C10_A029 3', mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||| ||||||||||||||||||
Sbjct: 54 ctcctcctcttcttcctcctcctc 77
>gb|DR163332.1|DR163332 RTFE1_42_G05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_G05_A029 3', mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||| ||||||||||||||||||
Sbjct: 356 ctcctcctcttcttcctcctcctc 379
>gb|DR178832.1|DR178832 RTMNUT1_14_F08.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_F08_A029 3', mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||| ||||||||||||||||||
Sbjct: 115 ctcctcctcttcttcctcctcctc 138
>gb|DR386190.1|DR386190 RTHG1_13_B06.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_B06_A029 5', mRNA sequence
Length = 245
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 236 tcctcctcctccccctcctc 217
>gb|DR388594.1|DR388594 RTHG1_29_F07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_F07_A029 3', mRNA sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctc 135
||||| ||||||||||||||||||
Sbjct: 208 ctcctcctcttcttcctcctcctc 231
>gb|DT624611.1|DT624611 EST1158946 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAH19 5' end, mRNA sequence
Length = 895
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||||||||| |||||||
Sbjct: 306 ttcttcctcctcctcctcctcctc 283
>gb|DT624642.1|DT624642 EST1158977 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAH51 5' end, mRNA sequence
Length = 430
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 397 tcctcctcctccccctcctc 378
>gb|DT625427.1|DT625427 EST1159702 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAP48 5' end, mRNA sequence
Length = 894
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 121 ttcttcctcctcctccccctcctc 144
|||||||||||||||| |||||||
Sbjct: 615 ttcttcctcctcctcctcctcctc 592
>gb|DT626974.1|DT626974 EST1160050 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAT42 5' end, mRNA sequence
Length = 276
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 251 tcctcctcctccccctcctc 232
>emb|CR354486.1| Pinus pinaster SSR, clone PPA5B12
Length = 524
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 122 tcttcctcctcctccccctcctca 145
||||||||||||||| ||||||||
Sbjct: 306 tcttcctcctcctcctcctcctca 283
>emb|CR377914.1| Pinus pinaster SSR, clone PPB3H02
Length = 546
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 122 tcttcctcctcctccccctcctca 145
||||||||||||||| ||||||||
Sbjct: 240 tcttcctcctcctcctcctcctca 263
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,718
Number of Sequences: 355925
Number of extensions: 128718
Number of successful extensions: 35367
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35223
Number of HSP's gapped (non-prelim): 105
length of query: 1061
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1042
effective length of database: 210,514,662
effective search space: 219356277804
effective search space used: 219356277804
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)