BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478337.2.1
(729 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT634898.1|DT634898 EST1149829 Normalized pine embryo li... 40 0.12
gb|CF393471.1|CF393471 RTDR3_13_C04.b1_A022 Loblolly pine r... 38 0.49
gb|DR164426.1|DR164426 RTFE1_48_G11.g1_A029 Roots minus iro... 38 0.49
gb|DR690555.1|DR690555 EST1080641 Normalized pine embryo li... 38 0.49
gb|DT637649.1|DT637649 EST1152580 Normalized pine embryo li... 38 0.49
>gb|DT634898.1|DT634898 EST1149829 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGA96 3' end, mRNA sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 303 ttttcttcttcttctcagaa 322
||||||||||||||||||||
Sbjct: 450 ttttcttcttcttctcagaa 431
>gb|CF393471.1|CF393471 RTDR3_13_C04.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_C04_A022 3', mRNA
sequence
Length = 670
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 153 atcacaacgaaaaaagaaaccga 175
||||||||||| |||||||||||
Sbjct: 446 atcacaacgaataaagaaaccga 468
>gb|DR164426.1|DR164426 RTFE1_48_G11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_G11_A029 5', mRNA sequence
Length = 905
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 153 atcacaacgaaaaaagaaaccga 175
||||||||||| |||||||||||
Sbjct: 248 atcacaacgaataaagaaaccga 226
>gb|DR690555.1|DR690555 EST1080641 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW43 3' end, mRNA sequence
Length = 760
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 153 atcacaacgaaaaaagaaaccga 175
||||||||||| |||||||||||
Sbjct: 353 atcacaacgaataaagaaaccga 331
>gb|DT637649.1|DT637649 EST1152580 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH604 3' end, mRNA sequence
Length = 902
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 153 atcacaacgaaaaaagaaaccga 175
||||||||||| |||||||||||
Sbjct: 357 atcacaacgaataaagaaaccga 335
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 109,226
Number of Sequences: 355925
Number of extensions: 109226
Number of successful extensions: 37792
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37779
Number of HSP's gapped (non-prelim): 13
length of query: 729
length of database: 217,277,237
effective HSP length: 19
effective length of query: 710
effective length of database: 210,514,662
effective search space: 149465410020
effective search space used: 149465410020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)