BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478065.2.2
(688 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX248947.1|BX248947 BX248947 Pinus pinaster differenciat... 117 6e-025
gb|BX249288.1|BX249288 BX249288 Pinus pinaster differenciat... 117 6e-025
gb|BX249705.1|BX249705 BX249705 Pinus pinaster differenciat... 117 6e-025
gb|BX252578.1|BX252578 BX252578 Pinus pinaster differenciat... 117 6e-025
gb|BX253886.1|BX253886 BX253886 Pinus pinaster differenciat... 117 6e-025
gb|BX255547.1|BX255547 BX255547 Pinus pinaster differenciat... 117 6e-025
gb|BX255612.1|BX255612 BX255612 Pinus pinaster differenciat... 117 6e-025
gb|BX667544.1|BX667544 BX667544 RN Pinus pinaster cDNA clon... 117 6e-025
gb|BX676937.1|BX676937 BX676937 RN Pinus pinaster cDNA clon... 117 6e-025
gb|CX712546.1|CX712546 RTPQ1_3_E03.b2_A032 Roots treated wi... 117 6e-025
gb|CX712625.1|CX712625 RTPQ1_3_E03.g1_A032 Roots treated wi... 117 6e-025
gb|BE762025.1|BE762025 NXCI_076_B04_F NXCI (Nsf Xylem Compr... 109 2e-022
gb|BF777970.1|BF777970 NXSI_079_D10_F NXSI (Nsf Xylem Side ... 109 2e-022
gb|BG039395.1|BG039395 NXSI_098_E10_F NXSI (Nsf Xylem Side ... 109 2e-022
gb|BG039741.1|BG039741 NXSI_103_E05_F NXSI (Nsf Xylem Side ... 109 2e-022
gb|BG040412.1|BG040412 NXSI_108_A01_F NXSI (Nsf Xylem Side ... 109 2e-022
gb|BG275739.1|BG275739 NXSI_145_D02_F NXSI (Nsf Xylem Side ... 109 2e-022
gb|BQ290653.1|BQ290653 NXRV047_H09_F NXRV (Nsf Xylem Root w... 109 2e-022
gb|BQ699273.1|BQ699273 NXRV121_F03_F NXRV (Nsf Xylem Root w... 109 2e-022
gb|DR013608.1|DR013608 HEAT1_20_H04.b1_A029 Root at 37 C fo... 109 2e-022
gb|DR013688.1|DR013688 HEAT1_20_H04.g1_A029 Root at 37 C fo... 109 2e-022
gb|DR097417.1|DR097417 STRR1_34_C01.g3_A033 Stem Response R... 109 2e-022
gb|DR385428.1|DR385428 RTHG1_8_D02.g1_A029 Roots plus added... 109 2e-022
gb|DR386621.1|DR386621 RTHG1_16_H12.b1_A029 Roots plus adde... 109 2e-022
gb|DR386817.1|DR386817 RTHG1_17_D05.g1_A029 Roots plus adde... 109 2e-022
gb|AW043150.1|AW043150 ST29H12 Pine TriplEx shoot tip libra... 101 4e-020
gb|AW981694.1|AW981694 PC15F02 Pine TriplEx pollen cone lib... 101 4e-020
gb|BX250663.1|BX250663 BX250663 Pinus pinaster differenciat... 101 4e-020
gb|AW985283.1|AW985283 NXNV_135_D03_F Nsf Xylem Normal wood... 101 4e-020
gb|BG275297.1|BG275297 NXSI_142_B05_F NXSI (Nsf Xylem Side ... 101 4e-020
gb|BQ291015.1|BQ291015 NXRV054_E11_F NXRV (Nsf Xylem Root w... 101 4e-020
gb|BQ634458.1|BQ634458 NXRV069_B09_F NXRV (Nsf Xylem Root w... 101 4e-020
gb|BQ701976.1|BQ701976 NXSI_122_H02_F NXSI (Nsf Xylem Side ... 101 4e-020
gb|BX677322.1|BX677322 BX677322 RN Pinus pinaster cDNA clon... 101 4e-020
gb|BX682457.1|BX682457 BX682457 Pinus pinaster differenciat... 101 4e-020
gb|CR394462.1|CR394462 CR394462 RN Pinus pinaster cDNA clon... 101 4e-020
gb|CX715269.1|CX715269 RTPQ1_33_B11.b1_A032 Roots treated w... 101 4e-020
gb|DR094147.1|DR094147 STRR1_12_F02.g1_A033 Stem Response R... 101 4e-020
gb|DR384292.1|DR384292 RTHG1_1_G04.b1_A029 Roots plus added... 101 4e-020
gb|DR384373.1|DR384373 RTHG1_1_G04.g1_A029 Roots plus added... 101 4e-020
gb|DR387646.1|DR387646 RTHG1_23_E10.b1_A029 Roots plus adde... 101 4e-020
gb|DR387724.1|DR387724 RTHG1_23_E10.g2_A029 Roots plus adde... 101 4e-020
gb|DR682025.1|DR682025 EST1072100 Normalized pine embryo li... 101 4e-020
gb|DR682026.1|DR682026 EST1072101 Normalized pine embryo li... 101 4e-020
gb|BQ702743.1|BQ702743 NXSI_132_A12_F NXSI (Nsf Xylem Side ... 100 1e-019
gb|BF010697.1|BF010697 NXCI_066_D05_F NXCI (Nsf Xylem Compr... 98 6e-019
gb|CR392530.1|CR392530 CR392530 RN Pinus pinaster cDNA clon... 94 9e-018
gb|DR097342.1|DR097342 STRR1_34_C01.b1_A033 Stem Response R... 94 9e-018
gb|BX253489.1|BX253489 BX253489 Pinus pinaster differenciat... 92 4e-017
gb|BM492793.1|BM492793 NXRV_031_B05_F NXRV (Nsf Xylem Root ... 92 4e-017
gb|CR394394.1|CR394394 CR394394 RN Pinus pinaster cDNA clon... 92 4e-017
gb|BQ699739.1|BQ699739 NXRV128_C07_F NXRV (Nsf Xylem Root w... 90 1e-016
gb|BX784111.1|BX784111 BX784111 Pinus pinaster differenciat... 88 6e-016
gb|AW981749.1|AW981749 PC18C01 Pine TriplEx pollen cone lib... 86 2e-015
gb|BX681171.1|BX681171 BX681171 RS Pinus pinaster cDNA clon... 86 2e-015
gb|BF609742.1|BF609742 NXSI_048_H06_F NXSI (Nsf Xylem Side ... 76 2e-012
gb|BI644005.1|BI644005 NXPV_138_D12_F NXPV (Nsf Xylem Plani... 70 1e-010
gb|BQ655215.1|BQ655215 NXRV091_E09_F NXRV (Nsf Xylem Root w... 70 1e-010
gb|CD022605.1|CD022605 NXPV_070_F05_F NXPV (Nsf Xylem Plani... 70 1e-010
gb|CD023432.1|CD023432 NXPV_126_C08_F NXPV (Nsf Xylem Plani... 70 1e-010
gb|DR386700.1|DR386700 RTHG1_16_H12.g1_A029 Roots plus adde... 70 1e-010
gb|AA557107.1|AA557107 949 Loblolly pine N Pinus taeda cDNA... 66 2e-009
gb|BM133330.1|BM133330 NXLV_004_A07_F NXLV (Nsf Xylem Late ... 66 2e-009
gb|DN629125.1|DN629125 EST979941 Subtracted pine embryo lib... 62 3e-008
gb|DN629401.1|DN629401 EST980217 Subtracted pine embryo lib... 62 3e-008
gb|DN630723.1|DN630723 EST981539 Subtracted pine embryo lib... 62 3e-008
gb|DT629796.1|DT629796 EST1154208 Subtracted pine embryo li... 62 3e-008
gb|DT630082.1|DT630082 EST1154494 Subtracted pine embryo li... 62 3e-008
gb|AW290226.1|AW290226 NXNV015D07F Nsf Xylem Normal wood Ve... 56 2e-006
gb|CD026856.1|CD026856 NXNV015D07 Nsf Xylem Normal wood Ver... 56 2e-006
gb|BE209354.1|BE209354 NXNV_166_G05_F Nsf Xylem Normal wood... 54 8e-006
gb|BF517570.1|BF517570 NXSI_026_B07_F NXSI (Nsf Xylem Side ... 52 3e-005
gb|BF517130.1|BF517130 NXSI_009_G11_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BQ634511.1|BQ634511 NXRV069_H01_F NXRV (Nsf Xylem Root w... 50 1e-004
gb|DN632672.1|DN632672 EST983488 Subtracted pine embryo lib... 50 1e-004
gb|BF609354.1|BF609354 NXSI_045_C11_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BM428059.1|BM428059 NXRV_008_C04_F NXRV (Nsf Xylem Root ... 48 5e-004
gb|CF672195.1|CF672195 RTCNT1_62_B03.b1_A029 Root control P... 48 5e-004
gb|CF672271.1|CF672271 RTCNT1_62_B03.g1_A029 Root control P... 48 5e-004
gb|BX677472.1|BX677472 BX677472 RN Pinus pinaster cDNA clon... 40 0.12
gb|BE496595.1|BE496595 NXCI_021_C05_F NXCI (Nsf Xylem Compr... 38 0.46
gb|BE762167.1|BE762167 NXCI_082_G08_F NXCI (Nsf Xylem Compr... 38 0.46
gb|CD021714.1|CD021714 NXNV_159_A11_F Nsf Xylem Normal wood... 38 0.46
>gb|BX248947.1|BX248947 BX248947 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP003A06 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 514
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 234 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 293
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 294 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 353
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 354 tactgtgctgaaatcgcacacaa 376
>gb|BX249288.1|BX249288 BX249288 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022C07 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 664
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 154 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 213
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 214 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 273
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 274 tactgtgctgaaatcgcacacaa 296
>gb|BX249705.1|BX249705 BX249705 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP027D03 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 670
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 258 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 317
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 318 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 377
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 378 tactgtgctgaaatcgcacacaa 400
>gb|BX252578.1|BX252578 BX252578 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066G01 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 594
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 190 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 249
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 250 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 309
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 310 tactgtgctgaaatcgcacacaa 332
>gb|BX253886.1|BX253886 BX253886 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP090A03 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 485
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 205 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 264
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 265 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 324
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 325 tactgtgctgaaatcgcacacaa 347
>gb|BX255547.1|BX255547 BX255547 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007A09 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 700
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 373 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 432
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 433 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 492
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 493 tactgtgctgaaatcgcacacaa 515
>gb|BX255612.1|BX255612 BX255612 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007G02 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 673
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 566 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 507
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 506 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 447
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 446 tactgtgctgaaatcgcacacaa 424
>gb|BX667544.1|BX667544 BX667544 RN Pinus pinaster cDNA clone RN09D02, mRNA sequence
Length = 506
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 154 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 213
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 214 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 273
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 274 tactgtgctgaaatcgcacacaa 296
>gb|BX676937.1|BX676937 BX676937 RN Pinus pinaster cDNA clone RN14D01, mRNA sequence
Length = 515
Score = 117 bits (59), Expect = 6e-025
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 153 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 212
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || ||||||||| ||| || || | |||||||||||||||||||||
Sbjct: 213 aagaagtttgttgtccacaatgttcatgacctagaccttcttatgatgcacaacaggaca 272
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 273 tactgtgctgaaatcgcacacaa 295
>gb|CX712546.1|CX712546 RTPQ1_3_E03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_E03_A032 3', mRNA sequence
Length = 658
Score = 117 bits (59), Expect = 6e-025
Identities = 167/203 (82%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 83 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 142
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 143 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 202
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 203 aagaagtttgttgtctacaatgttcatgacctagatcttcttatgatgcacaacaggaca 262
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 263 tactgtgctgaaatcgcacacaa 285
>gb|CX712625.1|CX712625 RTPQ1_3_E03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_3_E03_A032 5', mRNA sequence
Length = 676
Score = 117 bits (59), Expect = 6e-025
Identities = 167/203 (82%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 81 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 140
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 141 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 200
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 201 aagaagtttgttgtctacaatgttcatgacctagatcttcttatgatgcacaacaggaca 260
Query: 403 tactgtgctgaaatcgcacacaa 425
|||||||||||||||||||||||
Sbjct: 261 tactgtgctgaaatcgcacacaa 283
>gb|BE762025.1|BE762025 NXCI_076_B04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_076_B04 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 378
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 121 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 180
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 181 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 240
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 241 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 300
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 301 tactgcgctgaaatcgcacacaa 323
>gb|BF777970.1|BF777970 NXSI_079_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_079_D10 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 119 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 178
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 179 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 238
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 239 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 298
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 299 tactgcgctgaaatcgcacacaa 321
>gb|BG039395.1|BG039395 NXSI_098_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_E10 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 555
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 119 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 178
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 179 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 238
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 239 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 298
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 299 tactgcgctgaaatcgcacacaa 321
>gb|BG039741.1|BG039741 NXSI_103_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_E05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 517
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 145 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 204
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 205 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 264
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 265 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 324
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 325 tactgcgctgaaatcgcacacaa 347
>gb|BG040412.1|BG040412 NXSI_108_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_A01 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 550
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 124 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 183
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 184 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 243
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 244 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 303
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 304 tactgcgctgaaatcgcacacaa 326
>gb|BG275739.1|BG275739 NXSI_145_D02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_D02 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 119 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 178
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 179 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 238
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 239 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 298
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 299 tactgcgctgaaatcgcacacaa 321
>gb|BQ290653.1|BQ290653 NXRV047_H09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV047_H09 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 771
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 241 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 300
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 301 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 360
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 361 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 420
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 421 tactgcgctgaaatcgcacacaa 443
>gb|BQ699273.1|BQ699273 NXRV121_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_F03 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 407
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 127 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 186
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 187 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 246
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 247 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 306
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 307 tactgcgctgaaatcgcacacaa 329
>gb|DR013608.1|DR013608 HEAT1_20_H04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_H04_A029 3', mRNA sequence
Length = 782
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 129 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 188
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 189 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 248
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 249 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 308
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 309 tactgcgctgaaatcgcacacaa 331
>gb|DR013688.1|DR013688 HEAT1_20_H04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_H04_A029 5', mRNA sequence
Length = 715
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 102 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 161
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 162 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 221
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 222 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 281
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 282 tactgcgctgaaatcgcacacaa 304
>gb|DR097417.1|DR097417 STRR1_34_C01.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_C01_A033 5', mRNA sequence
Length = 716
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 111 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 170
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 171 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 230
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 231 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 290
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 291 tactgcgctgaaatcgcacacaa 313
>gb|DR385428.1|DR385428 RTHG1_8_D02.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_D02_A029 5', mRNA sequence
Length = 852
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 166 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 225
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 226 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 285
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 286 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 345
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 346 tactgcgctgaaatcgcacacaa 368
>gb|DR386621.1|DR386621 RTHG1_16_H12.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_16_H12_A029 3', mRNA sequence
Length = 724
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 135 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 194
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 195 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 254
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 255 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 314
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 315 tactgcgctgaaatcgcacacaa 337
>gb|DR386817.1|DR386817 RTHG1_17_D05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_D05_A029 5', mRNA sequence
Length = 758
Score = 109 bits (55), Expect = 2e-022
Identities = 166/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 163 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 222
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 223 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 282
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 283 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 342
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 343 tactgcgctgaaatcgcacacaa 365
>gb|AW043150.1|AW043150 ST29H12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29H12, mRNA sequence
Length = 601
Score = 101 bits (51), Expect = 4e-020
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 108 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 167
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 168 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 227
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| | || | |||||||||||||||||||||
Sbjct: 228 aagaagtttgttgtctacaatgttcatgacccagaccttcttatgatgcacaacaggaca 287
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 288 tactgcgctgaaatcgcacacaa 310
>gb|AW981694.1|AW981694 PC15F02 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15F02, mRNA sequence
Length = 584
Score = 101 bits (51), Expect = 4e-020
Identities = 159/194 (81%), Gaps = 1/194 (0%)
Strand = Plus / Plus
Query: 235 aagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacatt 294
|||||||| || || ||||| ||| | ||||||||||| || || | ||||| || |||
Sbjct: 180 aagggtattgattcacgtgtgaggagaaagttcaagggctgtgcccttatgcccaatatt 239
Query: 295 ggatatggctctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtc 354
|| ||||| ||| |||||||||||||||||||| || |||| ||||||||||||||
Sbjct: 240 ggttatggntctaacaagaagaccaggcactat-ttgccaatggctttaagaagtttgtt 298
Query: 355 gtgcacaatgtttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaa 414
|| || |||||| || ||||| | |||||||||||||||||||||| ||||||||||
Sbjct: 299 gtacataatgttaaagatctggaccttcttatgatgcacaacaggacattctgtgctgaa 358
Query: 415 atcgcacacaacgt 428
| |||||||||||
Sbjct: 359 gttgcacacaacgt 372
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 94 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 133
>gb|BX250663.1|BX250663 BX250663 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP039G04 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 651
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 125 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 184
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 185 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 244
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 245 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 304
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 305 attctgtgctgaagttgcacacaacgt 331
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 52 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 91
>gb|AW985283.1|AW985283 NXNV_135_D03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_135_D03 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 532
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 168 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 227
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 228 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 287
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 288 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 347
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 348 attctgtgctgaagttgcacacaacgt 374
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 95 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 134
>gb|BG275297.1|BG275297 NXSI_142_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_142_B05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 533
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 121 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 180
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 181 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 240
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 241 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 300
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 301 attctgtgctgaagttgcacacaacgt 327
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 48 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 87
>gb|BQ291015.1|BQ291015 NXRV054_E11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_E11 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 736
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 111 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 170
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 171 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 230
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 231 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 290
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 291 attctgtgctgaagttgcacacaacgt 317
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 38 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 77
>gb|BQ634458.1|BQ634458 NXRV069_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV069_B09 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 516
Score = 101 bits (51), Expect = 4e-020
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 158 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 217
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 218 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 277
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 278 tactgcgctgaaatcgcacacaa 300
>gb|BQ701976.1|BQ701976 NXSI_122_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_H02 5' similar to Arabidopsis thaliana
sequence At5g46430 ribosomal protein L32 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 421
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 143 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 202
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 203 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 262
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 263 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 322
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 323 attctgtgctgaagttgcacacaacgt 349
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 70 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 109
>gb|BX677322.1|BX677322 BX677322 RN Pinus pinaster cDNA clone RN20F04, mRNA sequence
Length = 439
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 123 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 182
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 183 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 242
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 243 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 302
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 303 attctgtgctgaagttgcacacaacgt 329
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 50 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 89
>gb|BX682457.1|BX682457 BX682457 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 116H06 similar to 60S ribosomal protein L32,
mRNA sequence
Length = 650
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 138 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 197
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 198 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 257
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 258 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 317
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 318 attctgtgctgaagttgcacacaacgt 344
>gb|CR394462.1|CR394462 CR394462 RN Pinus pinaster cDNA clone RN79F01, mRNA sequence
Length = 377
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 102 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 161
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 162 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 221
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||| |||||| || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 222 taagaagtatgtcgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 281
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 282 attctgtgctgaagttgcacacaacgt 308
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 29 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 68
>gb|CX715269.1|CX715269 RTPQ1_33_B11.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_B11_A032 3', mRNA sequence
Length = 807
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Minus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 662 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 603
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 602 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 543
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 542 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 483
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 482 attctgtgctgaagttgcacacaacgt 456
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 735 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 696
>gb|DR094147.1|DR094147 STRR1_12_F02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_F02_A033 5', mRNA sequence
Length = 630
Score = 101 bits (51), Expect = 4e-020
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 40 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 99
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 100 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 159
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 160 tactgcgctgaaatcgcacacaa 182
>gb|DR384292.1|DR384292 RTHG1_1_G04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_G04_A029 3', mRNA sequence
Length = 732
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 79 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 138
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 139 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 198
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 199 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 258
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 259 attctgtgctgaagttgcacacaacgt 285
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 6 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 45
>gb|DR384373.1|DR384373 RTHG1_1_G04.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_G04_A029 5', mRNA sequence
Length = 746
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 82 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 141
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 142 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 201
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 202 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 261
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 262 attctgtgctgaagttgcacacaacgt 288
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 9 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 48
>gb|DR387646.1|DR387646 RTHG1_23_E10.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_E10_A029 3', mRNA sequence
Length = 831
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 135 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 194
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 195 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 254
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 255 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 314
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 315 attctgtgctgaagttgcacacaacgt 341
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 62 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 101
>gb|DR387724.1|DR387724 RTHG1_23_E10.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_23_E10_A029 5', mRNA sequence
Length = 610
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 132 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 191
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 192 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 251
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 252 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 311
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 312 attctgtgctgaagttgcacacaacgt 338
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 59 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 98
>gb|DR682025.1|DR682025 EST1072100 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA565, mRNA sequence
Length = 604
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Minus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 598 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 539
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 538 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 479
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 478 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 419
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 418 attctgtgctgaagttgcacacaacgt 392
>gb|DR682026.1|DR682026 EST1072101 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA565 3' end, mRNA sequence
Length = 601
Score = 101 bits (51), Expect = 4e-020
Identities = 168/207 (81%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 7 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 66
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 67 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 126
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
|||||||||||| || || |||||| || ||||| | ||||||||||||||||||||
Sbjct: 127 taagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggac 186
Query: 402 atactgtgctgaaatcgcacacaacgt 428
|| |||||||||| | |||||||||||
Sbjct: 187 attctgtgctgaagttgcacacaacgt 213
>gb|BQ702743.1|BQ702743 NXSI_132_A12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_132_A12 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 467
Score = 99.6 bits (50), Expect = 1e-019
Identities = 164/203 (80%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 124 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 183
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 184 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 243
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || | |||||||||||||||||||||
Sbjct: 244 aagaagtttgttgtctacaatgttcatgacctnnnccttcttatgatgcacaacaggaca 303
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 304 tactgcgctgaaatcgcacacaa 326
>gb|BF010697.1|BF010697 NXCI_066_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_066_D05 5' similar to Arabidopsis
thaliana sequence At4g18100 ribosomal protein L32 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 399
Score = 97.6 bits (49), Expect = 6e-019
Identities = 164/203 (80%)
Strand = Plus / Plus
Query: 223 tggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttg 282
||||| ||||| |||||||| || || ||||| ||| | || || |||||||| || |
Sbjct: 121 tggcggaggcctaagggtattgattcacgtgttaggagaaaatttaagggatgtgccctt 180
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct: 181 atgccaaatattggttatgggtctaacaagaagaccagacactacctgcccaatggcttt 240
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || | |||||||||||||||||||||
Sbjct: 241 aagaagtttgttgtctacaatgttcatgacctannccttcttatgatgcacaacaggaca 300
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 301 tactgcgctgaaatcgcacacaa 323
>gb|CR392530.1|CR392530 CR392530 RN Pinus pinaster cDNA clone RN33G01, mRNA sequence
Length = 333
Score = 93.7 bits (47), Expect = 9e-018
Identities = 164/203 (80%)
Strand = Plus / Plus
Query: 222 ctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacctt 281
|||||| || || |||||||| || || ||||| ||| | ||||||||||| || || |
Sbjct: 131 ctggcggagaccaaagggtattgattcacgtgtgaggagaaagttcaagggctgtgccct 190
Query: 282 gatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtt 341
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || ||
Sbjct: 191 tatgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggctt 250
Query: 342 taagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggac 401
||||||||||||||| || |||||| || ||||| | |||||||||||||| |||||
Sbjct: 251 taagaagtttgtcgtacataatgttaaagatctggaccttcttatgatgcacaaaaggac 310
Query: 402 atactgtgctgaaatcgcacaca 424
|| |||||||||| | |||||||
Sbjct: 311 attctgtgctgaagttgcacaca 333
Score = 48.1 bits (24), Expect = 5e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggcc 188
||||||| ||||||||||| || ||| |||||||||||||
Sbjct: 58 agaagattgtgaagaagcgcgtgaagaagttcaagaggcc 97
>gb|DR097342.1|DR097342 STRR1_34_C01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_C01_A033 3', mRNA sequence
Length = 718
Score = 93.7 bits (47), Expect = 9e-018
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| | | ||||||||||||| ||||| || ||||| |||
Sbjct: 187 atgccaaatattggttatgggtttaacaagaagaccagacactacctgcccaatggcttt 246
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || |||||||| ||| || || | |||||||||||||||||||||
Sbjct: 247 aagaagtttgttgtctacaatgttcatgacctagaccttcttatgatgcacaacaggaca 306
Query: 403 tactgtgctgaaatcgcacacaa 425
||||| |||||||||||||||||
Sbjct: 307 tactgcgctgaaatcgcacacaa 329
>gb|BX253489.1|BX253489 BX253489 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP084B03 similar to 60S RIBOSOMAL PROTEIN
L32, mRNA sequence
Length = 581
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || |||
Sbjct: 13 atgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggcttt 72
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || || |||||| || ||||| | |||||||||||||||||||||
Sbjct: 73 aagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggaca 132
Query: 403 tactgtgctgaaatcgcacacaacgt 428
| |||||||||| | |||||||||||
Sbjct: 133 ttctgtgctgaagttgcacacaacgt 158
>gb|BM492793.1|BM492793 NXRV_031_B05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_031_B05 5' similar to Arabidopsis thaliana
sequence At4g18100 ribosomal protein L32 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 261
Score = 91.7 bits (46), Expect = 4e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 283 atgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagttt 342
||||| || ||||| ||||| ||| |||||||||||||||||||| | || || |||
Sbjct: 7 atgcccaatattggttatggatctaacaagaagaccaggcactatttgccaaatggcttt 66
Query: 343 aagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggaca 402
||||||||||| || || |||||| || ||||| | |||||||||||||||||||||
Sbjct: 67 aagaagtttgttgtacataatgttaaagatctggaccttcttatgatgcacaacaggaca 126
Query: 403 tactgtgctgaaatcgcacacaacgt 428
| |||||||||| | |||||||||||
Sbjct: 127 ttctgtgctgaagttgcacacaacgt 152
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,487
Number of Sequences: 355925
Number of extensions: 61487
Number of successful extensions: 18339
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18014
Number of HSP's gapped (non-prelim): 238
length of query: 688
length of database: 217,277,237
effective HSP length: 19
effective length of query: 669
effective length of database: 210,514,662
effective search space: 140834308878
effective search space used: 140834308878
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)