BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2477970.2.1
(699 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW011379.1|AW011379 ST20A12 Pine TriplEx shoot tip libra... 111 4e-023
gb|AI812874.1|AI812874 22A2 Pine Lambda Zap Xylem library P... 105 2e-021
gb|CV138662.1|CV138662 EST849871 Sequencing ESTs from loblo... 105 2e-021
gb|DT626597.1|DT626597 EST1158521 Sequencing ESTs from lobl... 105 2e-021
gb|AW587643.1|AW587643 ST60H05 Pine TriplEx shoot tip libra... 103 9e-021
gb|AL750653.1|AL750653 AL750653 RN Pinus pinaster cDNA clon... 103 9e-021
gb|BX250840.1|BX250840 BX250840 Pinus pinaster differenciat... 103 9e-021
gb|BX252801.1|BX252801 BX252801 Pinus pinaster differenciat... 103 9e-021
gb|BX253221.1|BX253221 BX253221 Pinus pinaster differenciat... 103 9e-021
gb|BX254836.1|BX254836 BX254836 Pinus pinaster differenciat... 103 9e-021
gb|BE496470.1|BE496470 NXCI_018_E04_F NXCI (Nsf Xylem Compr... 103 9e-021
gb|BF517851.1|BF517851 NXSI_029_A10_F NXSI (Nsf Xylem Side ... 103 9e-021
gb|BQ291205.1|BQ291205 NXRV057_C06_F NXRV (Nsf Xylem Root w... 103 9e-021
gb|BX678056.1|BX678056 BX678056 RN Pinus pinaster cDNA clon... 103 9e-021
gb|BX679588.1|BX679588 BX679588 RS Pinus pinaster cDNA clon... 103 9e-021
gb|BX679630.1|BX679630 BX679630 RS Pinus pinaster cDNA clon... 103 9e-021
gb|BX682073.1|BX682073 BX682073 RS Pinus pinaster cDNA clon... 103 9e-021
gb|CR354616.1|CR354616 CR354616 Pinus pinaster differenciat... 103 9e-021
gb|CR392253.1|CR392253 CR392253 RN Pinus pinaster cDNA clon... 103 9e-021
gb|CR394312.1|CR394312 CR394312 RN Pinus pinaster cDNA clon... 103 9e-021
gb|CN783911.1|CN783911 EST782602 Sequencing ESTs from loblo... 103 9e-021
gb|CO163866.1|CO163866 FLD1_44_F10.b1_A029 Root flooded Pin... 103 9e-021
gb|CV138649.1|CV138649 EST849858 Sequencing ESTs from loblo... 103 9e-021
gb|DR384514.1|DR384514 RTHG1_2_E12.g1_A029 Roots plus added... 103 9e-021
gb|DT626574.1|DT626574 EST1158498 Sequencing ESTs from lobl... 103 9e-021
gb|BE209227.1|BE209227 NXNV_147_F01_F Nsf Xylem Normal wood... 98 6e-019
gb|AA556393.1|AA556393 248 Loblolly pine C Pinus taeda cDNA... 96 2e-018
gb|AW042769.1|AW042769 ST25B09 Pine TriplEx shoot tip libra... 96 2e-018
gb|AW985265.1|AW985265 NXNV_135_B04_F Nsf Xylem Normal wood... 96 2e-018
gb|BF049818.1|BF049818 NXCI_111_B11_F NXCI (Nsf Xylem Compr... 96 2e-018
gb|BF169840.1|BF169840 NXCI_113_H11_F NXCI (Nsf Xylem Compr... 96 2e-018
gb|BF186158.1|BF186158 NXCI_133_F07_F NXCI (Nsf Xylem Compr... 96 2e-018
gb|BF517009.1|BF517009 NXSI_008_B05_F NXSI (Nsf Xylem Side ... 96 2e-018
gb|BF517202.1|BF517202 NXSI_011_F02_F NXSI (Nsf Xylem Side ... 96 2e-018
gb|BG039756.1|BG039756 NXSI_103_F06_F NXSI (Nsf Xylem Side ... 96 2e-018
gb|BG275288.1|BG275288 NXSI_138_H06_F NXSI (Nsf Xylem Side ... 96 2e-018
gb|BM367474.1|BM367474 NXLV_049_G03_F NXLV (Nsf Xylem Late ... 96 2e-018
gb|BQ635299.1|BQ635299 NXRV078_F03_F NXRV (Nsf Xylem Root w... 96 2e-018
gb|BQ702786.1|BQ702786 NXSI_132_F04_F NXSI (Nsf Xylem Side ... 96 2e-018
gb|CF401855.1|CF401855 RTWW1_15_A11.g1_A015 Well-watered lo... 96 2e-018
gb|CF471422.1|CF471422 RTDS1_3_G11.b1_A015 Drought-stressed... 96 2e-018
gb|CF471476.1|CF471476 RTDS1_3_G11.g1_A015 Drought-stressed... 96 2e-018
gb|CO158459.1|CO158459 FLD1_7_C01.b1_A029 Root flooded Pinu... 96 2e-018
gb|CV035667.1|CV035667 RTNACL1_41_D02.g1_A029 Roots plus ad... 96 2e-018
gb|CV137416.1|CV137416 EST848625 Sequencing ESTs from loblo... 96 2e-018
gb|DN448285.1|DN448285 EST944084 Sequencing ESTs from loblo... 96 2e-018
gb|DN464985.1|DN464985 EST960784 Sequencing ESTs from loblo... 96 2e-018
gb|DR101071.1|DR101071 STRR1_70_H01.b1_A033 Stem Response R... 96 2e-018
gb|DR101144.1|DR101144 STRR1_70_H01.g1_A033 Stem Response R... 96 2e-018
gb|AW056662.1|AW056662 ST54C10 Pine TriplEx shoot tip libra... 94 9e-018
gb|BE241263.1|BE241263 NXNV_183_E12_F Nsf Xylem Normal wood... 94 9e-018
gb|BE496587.1|BE496587 NXCI_020_H11_F NXCI (Nsf Xylem Compr... 94 9e-018
gb|BF010718.1|BF010718 NXCI_066_F08_F NXCI (Nsf Xylem Compr... 94 9e-018
gb|BF220800.1|BF220800 NXCI_151_H06_F NXCI (Nsf Xylem Compr... 92 4e-017
gb|BG039475.1|BG039475 NXSI_099_E02_F NXSI (Nsf Xylem Side ... 90 1e-016
gb|BX251945.1|BX251945 BX251945 Pinus pinaster differenciat... 88 6e-016
gb|BX255385.1|BX255385 BX255385 Pinus pinaster differenciat... 88 6e-016
gb|BF010969.1|BF010969 NXCI_096_E10_F NXCI (Nsf Xylem Compr... 88 6e-016
gb|BF220837.1|BF220837 NXCI_154_D11_F NXCI (Nsf Xylem Compr... 88 6e-016
gb|AW289962.1|AW289962 NXNV008G03F Nsf Xylem Normal wood Ve... 84 9e-015
gb|BQ701532.1|BQ701532 NXSI_065_F12_F NXSI (Nsf Xylem Side ... 84 9e-015
gb|CD026624.1|CD026624 NXNV008G03 Nsf Xylem Normal wood Ver... 84 9e-015
gb|CV035598.1|CV035598 RTNACL1_41_D02.b1_A029 Roots plus ad... 80 1e-013
gb|BE762148.1|BE762148 NXCI_082_C07_F NXCI (Nsf Xylem Compr... 78 5e-013
gb|CD016408.1|CD016408 NXCI_043_D05_F NXCI (Nsf Xylem Compr... 78 5e-013
gb|BE458097.1|BE458097 NXCI_008_A04_F NXCI (Nsf Xylem Compr... 72 3e-011
gb|BF049838.1|BF049838 NXCI_111_F04_F NXCI (Nsf Xylem Compr... 70 1e-010
gb|DR094246.1|DR094246 STRR1_13_H09.b1_A033 Stem Response R... 70 1e-010
gb|BE758681.1|BE758681 NXCI_062_B07_F NXCI (Nsf Xylem Compr... 66 2e-009
gb|BE656781.1|BE656781 NXCI_056_G11_F NXCI (Nsf Xylem Compr... 62 3e-008
gb|DR177433.1|DR177433 RTMNUT1_5_G05.b1_A029 Roots minus mi... 62 3e-008
gb|DR177525.1|DR177525 RTMNUT1_5_G05.g1_A029 Roots minus mi... 62 3e-008
gb|BQ655565.1|BQ655565 NXRV096_C05_F NXRV (Nsf Xylem Root w... 60 1e-007
gb|DN462792.1|DN462792 EST958591 Sequencing ESTs from loblo... 60 1e-007
gb|BX253439.1|BX253439 BX253439 Pinus pinaster differenciat... 58 5e-007
gb|BQ700070.1|BQ700070 NXRV134_E08_F NXRV (Nsf Xylem Root w... 58 5e-007
gb|CD017062.1|CD017062 NXCI_087_C12_F NXCI (Nsf Xylem Compr... 58 5e-007
gb|BX678184.1|BX678184 BX678184 RN Pinus pinaster cDNA clon... 58 5e-007
gb|CO201147.1|CO201147 RTCNT2_4_A01.b1_A029 Root control 2 ... 58 5e-007
gb|DR388545.1|DR388545 RTHG1_28_H11.g1_A029 Roots plus adde... 56 2e-006
gb|BX250013.1|BX250013 BX250013 Pinus pinaster differenciat... 52 3e-005
gb|BQ291409.1|BQ291409 NXRV053_G04_F NXRV (Nsf Xylem Root w... 50 1e-004
gb|BX249361.1|BX249361 BX249361 Pinus pinaster differenciat... 44 0.008
gb|CD018197.1|CD018197 NXLV_007_C04_F NXLV (Nsf Xylem Late ... 42 0.030
gb|CX651257.1|CX651257 COLD1_51_E04.b1_A029 Root cold Pinus... 42 0.030
>gb|AW011379.1|AW011379 ST20A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20A12, mRNA sequence
Length = 601
Score = 111 bits (56), Expect = 4e-023
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| ||||| ||| | ||||||||||| || |||
Sbjct: 243 cacgggcgtatcggcaagcacaggaagcatccgggtggtaggggtaacgccggaggtatg 302
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 303 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 358
>gb|AI812874.1|AI812874 22A2 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 447
Score = 105 bits (53), Expect = 2e-021
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 85 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 144
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggcatg 223
|||||||| || || ||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct: 145 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttggtatg 204
Query: 224 cgttacttccataagct 240
| ||||||| |||||
Sbjct: 205 aggcacttccacaagct 221
Score = 42.1 bits (21), Expect = 0.030
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaa 453
||||| ||||| ||||||||||| || || ||| | || ||||||||||||||
Sbjct: 382 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaa 434
>gb|CV138662.1|CV138662 EST849871 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB579 5' end, mRNA sequence
Length = 827
Score = 105 bits (53), Expect = 2e-021
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 255 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 314
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggcatg 223
|||||||| || || ||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct: 315 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttggtatg 374
Query: 224 cgttacttccataagct 240
| ||||||| |||||
Sbjct: 375 aggcacttccacaagct 391
Score = 50.1 bits (25), Expect = 1e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||| | |||
Sbjct: 552 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaagaggca 611
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 612 ggcggggcagtcatgctgaccgcct 636
>gb|DT626597.1|DT626597 EST1158521 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAC53 5' end, mRNA sequence
Length = 829
Score = 105 bits (53), Expect = 2e-021
Identities = 116/137 (84%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 255 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 314
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggcatg 223
|||||||| || || ||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct: 315 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttggtatg 374
Query: 224 cgttacttccataagct 240
| ||||||| |||||
Sbjct: 375 aggcacttccacaagct 391
Score = 50.1 bits (25), Expect = 1e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||| | |||
Sbjct: 552 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaagaggca 611
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 612 ggcggggcagtcatgctgaccgcct 636
>gb|AW587643.1|AW587643 ST60H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST60H05, mRNA sequence
Length = 420
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 111 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 170
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 171 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 226
>gb|AL750653.1|AL750653 AL750653 RN Pinus pinaster cDNA clone RN05H02 similar to RP L27,
mRNA sequence
Length = 554
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 17 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 76
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 77 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 132
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 314 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 373
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 374 ggcggggcagtcatgctgaccgcct 398
>gb|BX250840.1|BX250840 BX250840 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042A05 similar to 60S ribosomal protein
L27A, mRNA sequence
Length = 583
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 65 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 124
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 125 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 180
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 362 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 421
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 422 ggcggggcagtcatgctgaccgcct 446
>gb|BX252801.1|BX252801 BX252801 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070H09 similar to 60S ribosomal protein
L27A, mRNA sequence
Length = 622
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 65 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 124
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 125 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 180
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 362 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 421
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 422 ggcggggcagtcatgctgaccgcct 446
>gb|BX253221.1|BX253221 BX253221 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079H10 similar to 60S ribosomal protein
L27A, mRNA sequence
Length = 630
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 74 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 133
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 134 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 189
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 371 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 430
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 431 ggcggggcagtcatgctgaccgcct 455
>gb|BX254836.1|BX254836 BX254836 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP105F04 similar to 60S ribosomal protein
L27A, mRNA sequence
Length = 669
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 74 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 133
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 134 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 189
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 371 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 430
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 431 ggcggggcagtcatgctgaccgcct 455
>gb|BE496470.1|BE496470 NXCI_018_E04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_E04 5' similar to Arabidopsis
thaliana sequence At1g70600 60S ribosomal protein L27A
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 337
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 87 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 146
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 147 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 202
>gb|BF517851.1|BF517851 NXSI_029_A10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_029_A10 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 393
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 81 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 140
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 141 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 196
>gb|BQ291205.1|BQ291205 NXRV057_C06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV057_C06 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 604
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 179 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 238
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 239 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 294
>gb|BX678056.1|BX678056 BX678056 RN Pinus pinaster cDNA clone RN55G03, mRNA sequence
Length = 557
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 63 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 122
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 123 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 178
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 360 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 419
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 420 ggcggggcagtcatgctgaccgcct 444
>gb|BX679588.1|BX679588 BX679588 RS Pinus pinaster cDNA clone RS29A03, mRNA sequence
Length = 215
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 58 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 117
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 118 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 173
>gb|BX679630.1|BX679630 BX679630 RS Pinus pinaster cDNA clone RS30B05, mRNA sequence
Length = 260
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 54 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 113
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 114 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 169
>gb|BX682073.1|BX682073 BX682073 RS Pinus pinaster cDNA clone RS69G03, mRNA sequence
Length = 516
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 90 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 149
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 150 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 205
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 394 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 453
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 454 ggcggggcagtcatgctgaccgcct 478
>gb|CR354616.1|CR354616 CR354616 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 124A04, mRNA sequence
Length = 631
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 76 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 135
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 136 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 191
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 373 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 432
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 433 ggcggggcagtcatgctgaccgcct 457
>gb|CR392253.1|CR392253 CR392253 RN Pinus pinaster cDNA clone RN30A03, mRNA sequence
Length = 406
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 16 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 75
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 76 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 131
Score = 50.1 bits (25), Expect = 1e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||| | |||
Sbjct: 313 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaacgaggca 372
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 373 ggcggggcagtcatgctgaccgcct 397
>gb|CR394312.1|CR394312 CR394312 RN Pinus pinaster cDNA clone RN76F06, mRNA sequence
Length = 551
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 16 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 75
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 76 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 131
Score = 56.0 bits (28), Expect = 2e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 402 ccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcag 461
|||| ||||| ||||||||||| || || ||| | || |||||||||||||||| ||||
Sbjct: 314 ccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggcag 373
Query: 462 gcggcgccgtcgtgctcaccgcct 485
|||| || ||| |||| |||||||
Sbjct: 374 gcggggcagtcatgctgaccgcct 397
>gb|CN783911.1|CN783911 EST782602 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAE78 5' end, mRNA sequence
Length = 493
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 24 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 83
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 84 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 139
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 321 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 380
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 381 ggcggggcagtcatgctgaccgcct 405
>gb|CO163866.1|CO163866 FLD1_44_F10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_44_F10_A029 3', mRNA sequence
Length = 790
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 337 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 278
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 277 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 222
>gb|CV138649.1|CV138649 EST849858 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB566 5' end, mRNA sequence
Length = 717
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 174 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 233
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 234 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 289
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 471 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 530
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 531 ggcggggcagtcatgctgaccgcct 555
>gb|DR384514.1|DR384514 RTHG1_2_E12.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_2_E12_A029 5', mRNA sequence
Length = 640
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 81 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 140
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 141 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 196
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 378 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 437
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 438 ggcggggcagtcatgctgaccgcct 462
>gb|DT626574.1|DT626574 EST1158498 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAC29 5' end, mRNA sequence
Length = 722
Score = 103 bits (52), Expect = 9e-021
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 174 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 233
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 234 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 289
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 471 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 530
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 531 ggcggggcagtcatgctgaccgcct 555
>gb|BE209227.1|BE209227 NXNV_147_F01_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_147_F01 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 97.6 bits (49), Expect = 6e-019
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 69 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 128
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggcatg 223
|||||||| || || ||||||||||| |||||||| |||||||| || |||||||| |||
Sbjct: 129 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttggtatg 188
Query: 224 cgttacttccataagct 240
|| | ||||| |||||
Sbjct: 189 agtcatttccacaagct 205
>gb|AA556393.1|AA556393 248 Loblolly pine C Pinus taeda cDNA clone 1C1D, mRNA sequence
Length = 584
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 90 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 149
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 150 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 205
>gb|AW042769.1|AW042769 ST25B09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST25B09, mRNA sequence
Length = 601
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 123 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 182
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 183 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 238
>gb|AW985265.1|AW985265 NXNV_135_B04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_135_B04 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 301
Score = 95.6 bits (48), Expect = 2e-018
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | ||||||||||| || |||
Sbjct: 90 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgccggaggtatg 149
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctactt 207
|||||||| || || ||||||||||| |||||||| ||||||||
Sbjct: 150 caccaccatcgcattctcttcgacaaataccatcccggctactt 193
>gb|BF049818.1|BF049818 NXCI_111_B11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_111_B11 5' similar to Arabidopsis
thaliana sequence At1g70600 60S ribosomal protein L27A
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 428
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 84 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 143
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 144 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 199
>gb|BF169840.1|BF169840 NXCI_113_H11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_113_H11 5' similar to Arabidopsis
thaliana sequence At1g70600 60S ribosomal protein L27A
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 267
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 57 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 116
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 117 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 172
>gb|BF186158.1|BF186158 NXCI_133_F07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_133_F07 5' similar to Arabidopsis
thaliana sequence At1g70600 60S ribosomal protein L27A
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 466
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 74 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 133
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 134 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 189
>gb|BF517009.1|BF517009 NXSI_008_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_008_B05 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 336
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 73 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 132
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 133 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 188
>gb|BF517202.1|BF517202 NXSI_011_F02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_011_F02 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 494
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 64 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 123
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 124 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 179
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 361 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 420
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 421 ggcggggcagtcatgctgaccgcct 445
>gb|BG039756.1|BG039756 NXSI_103_F06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_F06 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 521
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 84 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 143
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 144 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 199
>gb|BG275288.1|BG275288 NXSI_138_H06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_138_H06 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 73 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 132
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 133 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 188
>gb|BM367474.1|BM367474 NXLV_049_G03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_049_G03 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 470
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 114 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 173
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 174 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 229
Score = 48.1 bits (24), Expect = 5e-004
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 407 gtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggc 466
||||| ||| ||||||| || || ||| | || |||||||||||||||| ||||||||
Sbjct: 276 gtcgtgaagnccaagcttatttctaagctggctgagaagaagatcaaggaggcaggcggg 335
Query: 467 gccgtcgtgctcaccgcct 485
|| ||| |||| |||||||
Sbjct: 336 gcagtcatgctgaccgcct 354
>gb|BQ635299.1|BQ635299 NXRV078_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV078_F03 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 558
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 90 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 149
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 150 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 205
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 387 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 446
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 447 ggcggggcagtcatgctgaccgcct 471
>gb|BQ702786.1|BQ702786 NXSI_132_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_132_F04 5' similar to Arabidopsis thaliana
sequence At1g70600 60S ribosomal protein L27A see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 476
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 90 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 149
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 150 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 205
>gb|CF401855.1|CF401855 RTWW1_15_A11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_15_A11_A015 5', mRNA sequence
Length = 697
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 194 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 253
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 254 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 309
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 491 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 550
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 551 ggcggggcagtcatgctgaccgcct 575
>gb|CF471422.1|CF471422 RTDS1_3_G11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_3_G11_A015 3', mRNA sequence
Length = 634
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 552 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 493
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 492 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 437
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 255 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 196
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 195 ggcggggcagtcatgctgaccgcct 171
>gb|CF471476.1|CF471476 RTDS1_3_G11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_3_G11_A015 5', mRNA sequence
Length = 638
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 556 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 497
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 496 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 441
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 259 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 200
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 199 ggcggggcagtcatgctgaccgcct 175
>gb|CO158459.1|CO158459 FLD1_7_C01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_C01_A029 3', mRNA sequence
Length = 530
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 76 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 135
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 136 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 191
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 373 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 432
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 433 ggcggggcagtcatgctgaccgcct 457
>gb|CV035667.1|CV035667 RTNACL1_41_D02.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_D02_A029 5', mRNA sequence
Length = 572
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 71 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 130
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 131 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 186
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 368 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 427
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 428 ggcggggcagtcatgctgaccgcct 452
>gb|CV137416.1|CV137416 EST848625 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAO19 5' end, mRNA sequence
Length = 632
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 98 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 157
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 158 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 213
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 396 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 455
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 456 ggcggggcagtcatgctgaccgcct 480
>gb|DN448285.1|DN448285 EST944084 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIC312 5' end, mRNA sequence
Length = 708
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 163 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 222
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 223 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 278
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 460 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 519
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 520 ggcggggcagtcatgctgaccgcct 544
>gb|DN464985.1|DN464985 EST960784 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJJ42 5' end, mRNA sequence
Length = 631
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 98 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 157
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 158 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 213
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 395 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 454
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 455 ggcggggcagtcatgctgaccgcct 479
>gb|DR101071.1|DR101071 STRR1_70_H01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_70_H01_A033 3', mRNA sequence
Length = 615
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 521 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 462
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 461 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 406
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 224 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 165
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 164 ggcggggcagtcatgctgaccgcct 140
>gb|DR101144.1|DR101144 STRR1_70_H01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_70_H01_A033 5', mRNA sequence
Length = 576
Score = 95.6 bits (48), Expect = 2e-018
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 104 cacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatg 163
||||| || |||||||||||||||||||| || || ||| | |||||||| || || |||
Sbjct: 479 cacgggcgtatcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatg 420
Query: 164 caccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|||||||| || || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 419 caccaccatcgcattctcttcgacaaataccatcccggctactttggtaaggttgg 364
Score = 58.0 bits (29), Expect = 5e-007
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 401 cccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagca 460
||||| ||||| ||||||||||| || || ||| | || |||||||||||||||| |||
Sbjct: 182 cccatcgtcgtgaaggccaagcttatttctaagctggctgagaagaagatcaaggaggca 123
Query: 461 ggcggcgccgtcgtgctcaccgcct 485
||||| || ||| |||| |||||||
Sbjct: 122 ggcggggcagtcatgctgaccgcct 98
>gb|AW056662.1|AW056662 ST54C10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54C10, mRNA sequence
Length = 405
Score = 93.7 bits (47), Expect = 9e-018
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 113 atcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatgcaccaccac 172
|||||||||||||||||||| || || ||| | |||||||| || || |||||||||||
Sbjct: 103 atcggcaagcacaggaagcatccaggtggtaggggtaacgctggaggtatgcaccaccat 162
Query: 173 cgtatcctcttcgacaagtaccatccgggctacttcggcaaggttgg 219
|| || ||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 163 cgcattctcttcgacaaataccatcccggctactttggtaaggttgg 209
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,196
Number of Sequences: 355925
Number of extensions: 79196
Number of successful extensions: 19887
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19700
Number of HSP's gapped (non-prelim): 183
length of query: 699
length of database: 217,277,237
effective HSP length: 19
effective length of query: 680
effective length of database: 210,514,662
effective search space: 143149970160
effective search space used: 143149970160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)