BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX250629.1|BX250629 BX250629 Pinus pinaster differenciat... 40 0.27
gb|BX251747.1|BX251747 BX251747 Pinus pinaster differenciat... 40 0.27
gb|BX252723.1|BX252723 BX252723 Pinus pinaster differenciat... 40 0.27
gb|BX253245.1|BX253245 BX253245 Pinus pinaster differenciat... 40 0.27
gb|BX253351.1|BX253351 BX253351 Pinus pinaster differenciat... 40 0.27
gb|BF777180.1|BF777180 NXSI_066_C10_F NXSI (Nsf Xylem Side ... 40 0.27
gb|BF777227.1|BF777227 NXSI_066_F11_F NXSI (Nsf Xylem Side ... 40 0.27
gb|BG040302.1|BG040302 NXSI_110_G08_F NXSI (Nsf Xylem Side ... 40 0.27
gb|CN786016.1|CN786016 EST784707 Sequencing ESTs from loblo... 40 0.27
gb|CO363680.1|CO363680 RTK1_11_E06.b1_A029 Roots minus pota... 40 0.27
gb|CO365660.1|CO365660 RTK1_18_A03.g1_A029 Roots minus pota... 40 0.27
gb|CV033735.1|CV033735 RTNACL1_36_G08.b1_A029 Roots plus ad... 40 0.27
gb|CV137730.1|CV137730 EST848939 Sequencing ESTs from loblo... 40 0.27
gb|DR071962.1|DR071962 RTDK1_23_E03.b1_A029 Roots, dark Pin... 40 0.27
gb|DR072035.1|DR072035 RTDK1_23_E03.g1_A029 Roots, dark Pin... 40 0.27
gb|DR079421.1|DR079421 RTFEPL1_11_D12.b1_A029 Roots plus ad... 40 0.27
gb|DR169267.1|DR169267 RTPHOS1_31_E06.b1_A029 Roots minus p... 40 0.27
gb|DR745480.1|DR745480 RTCU1_29_H03.g1_A029 Roots plus adde... 40 0.27
>gb|BX250629.1|BX250629 BX250629 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP039C12 similar to Glycine rich RNA binding
protein, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 407 ccaccgccaccgccaccacc 388
>gb|BX251747.1|BX251747 BX251747 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP054H01, mRNA sequence
Length = 698
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 359 ccaccaccgccaccgccacc 340
>gb|BX252723.1|BX252723 BX252723 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069G05 similar to Glycine rich RNA binding
protein, mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 416 ccaccgccaccgccaccacc 397
>gb|BX253245.1|BX253245 BX253245 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP080C02 similar to Glycine rich RNA binding
protein, mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 401 ccaccgccaccgccaccacc 382
>gb|BX253351.1|BX253351 BX253351 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP081H07 similar to Glycine rich RNA binding
protein, mRNA sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 407 ccaccgccaccgccaccacc 388
>gb|BF777180.1|BF777180 NXSI_066_C10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_066_C10 5' similar to Arabidopsis thaliana
sequence At3g15680 putative zinc finger protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 223 ccaccaccgccaccgccacc 204
>gb|BF777227.1|BF777227 NXSI_066_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_066_F11 5' similar to Arabidopsis thaliana
sequence At3g15680 putative zinc finger protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 167 ccaccaccgccaccgccacc 148
>gb|BG040302.1|BG040302 NXSI_110_G08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_G08 5' similar to Arabidopsis thaliana
sequence At3g15680 putative zinc finger protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 444
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 322 ccaccaccgccaccgccacc 303
>gb|CN786016.1|CN786016 EST784707 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB657 5' end, mRNA sequence
Length = 867
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 481 ccaccaccgccaccgccacc 462
>gb|CO363680.1|CO363680 RTK1_11_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_E06_A029 3', mRNA sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 137 ccaccaccgccaccgccacc 118
>gb|CO365660.1|CO365660 RTK1_18_A03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_18_A03_A029 5', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 330 ccaccaccgccaccgccacc 311
>gb|CV033735.1|CV033735 RTNACL1_36_G08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G08_A029 3', mRNA sequence
Length = 837
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 238 ccaccaccgccaccgccacc 219
>gb|CV137730.1|CV137730 EST848939 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAT64 5' end, mRNA sequence
Length = 760
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 356 ccaccaccgccaccgccacc 337
>gb|DR071962.1|DR071962 RTDK1_23_E03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_E03_A029 3', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 311 ccaccaccgccaccgccacc 330
>gb|DR072035.1|DR072035 RTDK1_23_E03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_E03_A029 5', mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 591 ccaccaccgccaccgccacc 610
>gb|DR079421.1|DR079421 RTFEPL1_11_D12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_D12_A029 3', mRNA sequence
Length = 811
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 493 ccaccaccgccaccgccacc 512
>gb|DR169267.1|DR169267 RTPHOS1_31_E06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_31_E06_A029 3', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 317 ccaccaccgccaccgccacc 336
>gb|DR745480.1|DR745480 RTCU1_29_H03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_29_H03_A029 5', mRNA sequence
Length = 609
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 586 ccaccaccgccaccgccacc 605
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 188,805
Number of Sequences: 355925
Number of extensions: 188805
Number of successful extensions: 57295
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57254
Number of HSP's gapped (non-prelim): 41
length of query: 1565
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1545
effective length of database: 210,158,737
effective search space: 324695248665
effective search space used: 324695248665
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)