BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448753.2.1
(537 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV138315.1|CV138315 EST849524 Sequencing ESTs from loblo... 50 9e-005
gb|DR386431.1|DR386431 RTHG1_15_E03.b1_A029 Roots plus adde... 50 9e-005
gb|DR690964.1|DR690964 EST1081050 Normalized pine embryo li... 50 9e-005
gb|DT626617.1|DT626617 EST1158541 Sequencing ESTs from lobl... 50 9e-005
gb|DR069088.1|DR069088 RTDK1_4_G04.g1_A029 Roots, dark Pinu... 46 0.001
gb|AW011582.1|AW011582 ST22E06 Pine TriplEx shoot tip libra... 38 0.36
gb|BM428633.1|BM428633 NXRV_019_F05_F NXRV (Nsf Xylem Root ... 38 0.36
gb|BQ654827.1|BQ654827 NXRV086_C02_F NXRV (Nsf Xylem Root w... 38 0.36
gb|CF395698.1|CF395698 RTDS2_16_H02.g1_A021 Drought-stresse... 38 0.36
gb|DR169383.1|DR169383 RTPHOS1_32_B12.b1_A029 Roots minus p... 38 0.36
gb|DR169454.1|DR169454 RTPHOS1_32_B12.g1_A029 Roots minus p... 38 0.36
gb|DR685773.1|DR685773 EST1075850 Normalized pine embryo li... 38 0.36
gb|DT633046.1|DT633046 EST1147977 Normalized pine embryo li... 38 0.36
gb|DT636465.1|DT636465 EST1151396 Normalized pine embryo li... 38 0.36
>gb|CV138315.1|CV138315 EST849524 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB164 5' end, mRNA sequence
Length = 572
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 133 catgtcatcatccaagctttttgttggagggct 165
||||||||| || ||||||||||||||||||||
Sbjct: 292 catgtcatcttctaagctttttgttggagggct 324
>gb|DR386431.1|DR386431 RTHG1_15_E03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_15_E03_A029 3', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 133 catgtcatcatccaagctttttgttggagggct 165
||||||||| || ||||||||||||||||||||
Sbjct: 298 catgtcatcttctaagctttttgttggagggct 266
>gb|DR690964.1|DR690964 EST1081050 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD203 3' end, mRNA sequence
Length = 555
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 133 catgtcatcatccaagctttttgttggagggct 165
||||||||| || ||||||||||||||||||||
Sbjct: 267 catgtcatcttctaagctttttgttggagggct 299
>gb|DT626617.1|DT626617 EST1158541 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAC75 5' end, mRNA sequence
Length = 580
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 133 catgtcatcatccaagctttttgttggagggct 165
||||||||| || ||||||||||||||||||||
Sbjct: 292 catgtcatcttctaagctttttgttggagggct 324
>gb|DR069088.1|DR069088 RTDK1_4_G04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_4_G04_A029 5', mRNA sequence
Length = 780
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 244 tgatcgtgagtctgggaggtccagaggttttggctttat 282
|||||| || ||||||||||| ||||||||||| |||||
Sbjct: 202 tgatcgagattctgggaggtcaagaggttttgggtttat 240
>gb|AW011582.1|AW011582 ST22E06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22E06, mRNA sequence
Length = 562
Score = 38.2 bits (19), Expect = 0.36
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 144 ccaagctttttgttggagggctttctt 170
|||| |||||||||||||| |||||||
Sbjct: 128 ccaaactttttgttggaggactttctt 154
>gb|BM428633.1|BM428633 NXRV_019_F05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_019_F05 5' similar to Arabidopsis thaliana
sequence At5g06210 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 371
Score = 38.2 bits (19), Expect = 0.36
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 144 ccaagctttttgttggagggctttctt 170
|||| |||||||||||||| |||||||
Sbjct: 123 ccaaactttttgttggaggactttctt 149
>gb|BQ654827.1|BQ654827 NXRV086_C02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV086_C02 5' similar to Arabidopsis thaliana
sequence At5g06210 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 38.2 bits (19), Expect = 0.36
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 144 ccaagctttttgttggagggctttctt 170
|||| |||||||||||||| |||||||
Sbjct: 151 ccaaactttttgttggaggactttctt 177
>gb|CF395698.1|CF395698 RTDS2_16_H02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_H02_A021 5', mRNA sequence
Length = 756
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146 aagctttttgttggagggctttc 168
||||| |||||||||||||||||
Sbjct: 221 aagctctttgttggagggctttc 243
>gb|DR169383.1|DR169383 RTPHOS1_32_B12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_32_B12_A029 3', mRNA sequence
Length = 753
Score = 38.2 bits (19), Expect = 0.36
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 144 ccaagctttttgttggagggctttctt 170
|||| |||||||||||||| |||||||
Sbjct: 7 ccaaactttttgttggaggactttctt 33
>gb|DR169454.1|DR169454 RTPHOS1_32_B12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_32_B12_A029 5', mRNA sequence
Length = 703
Score = 38.2 bits (19), Expect = 0.36
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 144 ccaagctttttgttggagggctttctt 170
|||| |||||||||||||| |||||||
Sbjct: 118 ccaaactttttgttggaggactttctt 144
>gb|DR685773.1|DR685773 EST1075850 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB772 3' end, mRNA sequence
Length = 767
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146 aagctttttgttggagggctttc 168
||||| |||||||||||||||||
Sbjct: 374 aagctctttgttggagggctttc 396
>gb|DT633046.1|DT633046 EST1147977 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFQ63 3' end, mRNA sequence
Length = 871
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146 aagctttttgttggagggctttc 168
||||| |||||||||||||||||
Sbjct: 382 aagctctttgttggagggctttc 404
>gb|DT636465.1|DT636465 EST1151396 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGS17 3' end, mRNA sequence
Length = 804
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146 aagctttttgttggagggctttc 168
||||| |||||||||||||||||
Sbjct: 333 aagctctttgttggagggctttc 355
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,310
Number of Sequences: 355925
Number of extensions: 47310
Number of successful extensions: 12849
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12834
Number of HSP's gapped (non-prelim): 15
length of query: 537
length of database: 217,277,237
effective HSP length: 19
effective length of query: 518
effective length of database: 210,514,662
effective search space: 109046594916
effective search space used: 109046594916
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)