BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448385.2.9
(708 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX653185.1|CX653185 COLD1_63_H12.g1_A029 Root cold Pinus... 295 1e-078
gb|CF471263.1|CF471263 RTDS1_2_F12.b1_A015 Drought-stressed... 289 8e-077
gb|CF471309.1|CF471309 RTDS1_2_F12.g1_A015 Drought-stressed... 289 8e-077
gb|CO165396.1|CO165396 FLD1_54_F08.b1_A029 Root flooded Pin... 289 8e-077
gb|CO165474.1|CO165474 FLD1_54_F08.g1_A029 Root flooded Pin... 289 8e-077
gb|CX649550.1|CX649550 COLD1_36_A12.b1_A029 Root cold Pinus... 289 8e-077
gb|DR071976.1|DR071976 RTDK1_23_F07.b1_A029 Roots, dark Pin... 289 8e-077
gb|CX653099.1|CX653099 COLD1_63_H12.b1_A029 Root cold Pinus... 287 3e-076
gb|DR093708.1|DR093708 STRR1_10_A05.b1_A033 Stem Response R... 287 3e-076
gb|DR093789.1|DR093789 STRR1_10_A05.g1_A033 Stem Response R... 287 3e-076
gb|AL749924.1|AL749924 AL749924 AS Pinus pinaster cDNA clon... 281 2e-074
gb|AL749992.1|AL749992 AL749992 AS Pinus pinaster cDNA clon... 281 2e-074
gb|BX254841.1|BX254841 BX254841 Pinus pinaster differenciat... 281 2e-074
gb|BX255496.1|BX255496 BX255496 Pinus pinaster differenciat... 281 2e-074
gb|CF472285.1|CF472285 RTDS1_5_D10.g1_A015 Drought-stressed... 281 2e-074
gb|BX784126.1|BX784126 BX784126 Pinus pinaster differenciat... 281 2e-074
gb|DR072050.1|DR072050 RTDK1_23_F07.g1_A029 Roots, dark Pin... 274 5e-072
gb|BM133664.1|BM133664 NXLV_010_E03_F NXLV (Nsf Xylem Late ... 266 1e-069
gb|BQ699113.1|BQ699113 NXRV119_F03_F NXRV (Nsf Xylem Root w... 264 4e-069
gb|BQ700894.1|BQ700894 NXRV112_H01_F NXRV (Nsf Xylem Root w... 264 4e-069
gb|AW981970.1|AW981970 PC22B10 Pine TriplEx pollen cone lib... 258 3e-067
gb|BQ702661.1|BQ702661 NXSI_131_B01_F NXSI (Nsf Xylem Side ... 248 3e-064
gb|AW056621.1|AW056621 ST53G03 Pine TriplEx shoot tip libra... 238 3e-061
gb|BM157591.1|BM157591 NXLV_021_H11_F NXLV (Nsf Xylem Late ... 234 4e-060
gb|AI812933.1|AI812933 22F2 Pine Lambda Zap Xylem library P... 230 6e-059
gb|AW011021.1|AW011021 ST15G04 Pine TriplEx shoot tip libra... 230 6e-059
gb|BQ701177.1|BQ701177 NXSI_023_D12_F NXSI (Nsf Xylem Side ... 230 6e-059
gb|CX650023.1|CX650023 COLD1_43_B07.b1_A029 Root cold Pinus... 230 6e-059
gb|CX650099.1|CX650099 COLD1_43_B07.g1_A029 Root cold Pinus... 230 6e-059
gb|DR014264.1|DR014264 HEAT1_24_A03.g1_A029 Root at 37 C fo... 230 6e-059
gb|DR019950.1|DR019950 STRS1_33_D01.g1_A034 Shoot tip pitch... 230 6e-059
gb|DR052863.1|DR052863 RTCA1_7_H08.b1_A029 Roots minus calc... 230 6e-059
gb|DR099392.1|DR099392 STRR1_55_F08.b1_A033 Stem Response R... 230 6e-059
gb|DR743881.1|DR743881 RTCU1_18_E12.g1_A029 Roots plus adde... 230 6e-059
gb|CF665546.1|CF665546 RTCNT1_16_E05.g1_A029 Root control P... 228 2e-058
gb|AL750020.1|AL750020 AL750020 AS Pinus pinaster cDNA clon... 226 1e-057
gb|DR014189.1|DR014189 HEAT1_24_A03.b1_A029 Root at 37 C fo... 224 4e-057
gb|BM158598.1|BM158598 NXLV_036_G01_F NXLV (Nsf Xylem Late ... 222 2e-056
gb|DR052948.1|DR052948 RTCA1_7_H08.g1_A029 Roots minus calc... 222 2e-056
gb|CO201192.1|CO201192 RTCNT2_4_E06.b1_A029 Root control 2 ... 218 2e-055
gb|CO201272.1|CO201272 RTCNT2_4_E06.g1_A029 Root control 2 ... 218 2e-055
gb|BX255132.1|BX255132 BX255132 Pinus pinaster differenciat... 214 4e-054
gb|CF665468.1|CF665468 RTCNT1_16_E05.b1_A029 Root control P... 214 4e-054
gb|BM367354.1|BM367354 NXLV_048_B05_F NXLV (Nsf Xylem Late ... 212 1e-053
gb|BE496569.1|BE496569 NXCI_020_G03_F NXCI (Nsf Xylem Compr... 204 4e-051
gb|BG275153.1|BG275153 NXSI_140_D03_F NXSI (Nsf Xylem Side ... 204 4e-051
gb|AW497797.1|AW497797 PC02D04 Pine TriplEx pollen cone lib... 202 1e-050
gb|BF609043.1|BF609043 NXSI_039_G03_F NXSI (Nsf Xylem Side ... 202 1e-050
gb|AL749999.1|AL749999 AL749999 AS Pinus pinaster cDNA clon... 192 1e-047
gb|BQ702406.1|BQ702406 NXSI_128_C09_F NXSI (Nsf Xylem Side ... 190 5e-047
gb|CF472194.1|CF472194 RTDS1_5_D10.b1_A015 Drought-stressed... 188 2e-046
gb|BX253075.1|BX253075 BX253075 Pinus pinaster differenciat... 186 8e-046
gb|BE758733.1|BE758733 NXCI_060_B03_F NXCI (Nsf Xylem Compr... 180 5e-044
gb|BF777605.1|BF777605 NXSI_070_D12_F NXSI (Nsf Xylem Side ... 180 5e-044
gb|BF779017.1|BF779017 NXSI_093_D06_F NXSI (Nsf Xylem Side ... 180 5e-044
gb|BQ198520.1|BQ198520 NXLV132_C11_F NXLV (Nsf Xylem Late w... 180 5e-044
gb|BE662309.1|BE662309 ST84/ST84D11 Pine TriplEx shoot tip ... 178 2e-043
gb|BF777344.1|BF777344 NXSI_068_E09_F NXSI (Nsf Xylem Side ... 176 8e-043
gb|BQ197244.1|BQ197244 NXLV111_E02_F NXLV (Nsf Xylem Late w... 176 8e-043
gb|BX249209.1|BX249209 BX249209 Pinus pinaster differenciat... 167 8e-040
gb|BG039014.1|BG039014 NXSI_024_E10_F NXSI (Nsf Xylem Side ... 167 8e-040
gb|BG040816.1|BG040816 NXSI_115_D11_F NXSI (Nsf Xylem Side ... 167 8e-040
gb|CF391502.1|CF391502 RTDR3_9_B04.b1_A022 Loblolly pine ro... 167 8e-040
gb|BF518088.1|BF518088 NXSI_030_H01_F NXSI (Nsf Xylem Side ... 165 3e-039
gb|DR023980.1|DR023980 STRS1_61_B04.g1_A034 Shoot tip pitch... 165 3e-039
gb|CF393122.1|CF393122 RTDR3_17_G05.b1_A022 Loblolly pine r... 155 3e-036
gb|BG526934.1|BG526934 NXPV_057_E10_F NXPV (Nsf Xylem Plani... 123 1e-026
gb|BI202795.1|BI202795 NXPV_090_F03_F NXPV (Nsf Xylem Plani... 119 2e-025
gb|BE458057.1|BE458057 NXCI_005_D01_F NXCI (Nsf Xylem Compr... 117 6e-025
gb|BF609445.1|BF609445 NXSI_044_E09_F NXSI (Nsf Xylem Side ... 115 3e-024
gb|BG526932.1|BG526932 NXPV_057_E08_F NXPV (Nsf Xylem Plani... 113 1e-023
gb|BG039213.1|BG039213 NXSI_096_C07_F NXSI (Nsf Xylem Side ... 105 2e-021
gb|AW056926.1|AW056926 ST57H11 Pine TriplEx shoot tip libra... 101 4e-020
gb|BQ635037.1|BQ635037 NXRV076_B09_F NXRV (Nsf Xylem Root w... 101 4e-020
gb|AW981690.1|AW981690 PC15E09 Pine TriplEx pollen cone lib... 98 6e-019
gb|BF609498.1|BF609498 NXSI_043_C11_F NXSI (Nsf Xylem Side ... 86 2e-015
gb|BX249169.1|BX249169 BX249169 Pinus pinaster differenciat... 82 4e-014
gb|BE643954.1|BE643954 NXCI_050_F12_F NXCI (Nsf Xylem Compr... 76 2e-012
gb|AW011119.1|AW011119 ST16H11 Pine TriplEx shoot tip libra... 74 9e-012
gb|BE123707.1|BE123707 NXNV_151_H04_F Nsf Xylem Normal wood... 72 3e-011
gb|AW587862.1|AW587862 ST67H11 Pine TriplEx shoot tip libra... 70 1e-010
gb|BM492319.1|BM492319 NXRV_024_F04_F NXRV (Nsf Xylem Root ... 68 5e-010
gb|DR081204.1|DR081204 RTFEPL1_28_D02.b1_A029 Roots plus ad... 64 8e-009
gb|DR389043.1|DR389043 RTHG1_32_C04.b1_A029 Roots plus adde... 62 3e-008
gb|DR081287.1|DR081287 RTFEPL1_28_D02.g1_A029 Roots plus ad... 58 5e-007
gb|AW226353.1|AW226353 ST81D05 Pine TriplEx shoot tip libra... 56 2e-006
gb|CX647945.1|CX647945 COLD1_25_B11.g1_A029 Root cold Pinus... 56 2e-006
gb|BQ699518.1|BQ699518 NXRV123_D01_F NXRV (Nsf Xylem Root w... 52 3e-005
gb|DR019881.1|DR019881 STRS1_33_D01.b1_A034 Shoot tip pitch... 52 3e-005
gb|CD019389.1|CD019389 NXLV_080_D07_F NXLV (Nsf Xylem Late ... 48 5e-004
gb|BF778655.1|BF778655 NXSI_090_C02_F NXSI (Nsf Xylem Side ... 44 0.008
gb|CD025158.1|CD025158 NXSI_024_G02_F NXSI (Nsf Xylem Side ... 44 0.008
gb|CO169869.1|CO169869 NDL1_10_E02.b1_A029 Needles control ... 42 0.030
gb|CD024632.1|CD024632 NXRV065_H04_F NXRV (Nsf Xylem Root w... 40 0.12
>gb|CX653185.1|CX653185 COLD1_63_H12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_H12_A029 5', mRNA sequence
Length = 731
Score = 295 bits (149), Expect = 1e-078
Identities = 356/425 (83%)
Strand = Plus / Minus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 630 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagga 571
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 570 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 511
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| |||||||| || || |||||||||||||
Sbjct: 510 cctttgctggttcctctcatgccaagggcattgttctggaaaaaataggtattgaggcca 451
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 450 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 391
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || ||||||||||
Sbjct: 390 agattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgagg 331
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggt 451
| ||||||||||||||||| || ||||| || |||||||| || |||||||| || ||||
Sbjct: 330 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggt 271
Query: 452 tcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggaga 511
| || |||||||||||||||||||| || || | || || |||||||||||||||||||
Sbjct: 270 ttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggaga 211
Query: 512 agcca 516
|||||
Sbjct: 210 agcca 206
>gb|CF471263.1|CF471263 RTDS1_2_F12.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_2_F12_A015 3', mRNA sequence
Length = 708
Score = 289 bits (146), Expect = 8e-077
Identities = 356/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 2 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 61
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 62 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 121
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 122 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 181
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 182 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 241
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 242 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 301
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 302 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 361
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 362 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 421
Query: 511 aagcca 516
||||||
Sbjct: 422 aagcca 427
>gb|CF471309.1|CF471309 RTDS1_2_F12.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_2_F12_A015 5', mRNA sequence
Length = 629
Score = 289 bits (146), Expect = 8e-077
Identities = 356/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 74 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 133
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 134 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 193
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 194 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 253
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 254 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 313
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 314 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 373
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 374 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 433
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 434 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 493
Query: 511 aagcca 516
||||||
Sbjct: 494 aagcca 499
>gb|CO165396.1|CO165396 FLD1_54_F08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_F08_A029 3', mRNA sequence
Length = 809
Score = 289 bits (146), Expect = 8e-077
Identities = 356/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 106 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 165
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 166 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 225
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 226 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 285
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 286 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 345
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 346 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 405
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 406 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 465
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 466 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 525
Query: 511 aagcca 516
||||||
Sbjct: 526 aagcca 531
>gb|CO165474.1|CO165474 FLD1_54_F08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_F08_A029 5', mRNA sequence
Length = 787
Score = 289 bits (146), Expect = 8e-077
Identities = 356/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 81 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 140
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 141 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 200
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 201 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 260
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 261 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 320
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 321 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 380
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 381 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 440
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 441 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 500
Query: 511 aagcca 516
||||||
Sbjct: 501 aagcca 506
>gb|CX649550.1|CX649550 COLD1_36_A12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_36_A12_A029 3', mRNA sequence
Length = 781
Score = 289 bits (146), Expect = 8e-077
Identities = 356/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 83 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 142
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 143 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 202
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 203 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 262
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 263 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 322
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 323 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 382
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 383 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 442
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 443 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 502
Query: 511 aagcca 516
||||||
Sbjct: 503 aagcca 508
>gb|DR071976.1|DR071976 RTDK1_23_F07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_F07_A029 3', mRNA sequence
Length = 719
Score = 289 bits (146), Expect = 8e-077
Identities = 356/426 (83%)
Strand = Plus / Minus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 560 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 501
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 500 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 441
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 440 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 381
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 380 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 321
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 320 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 261
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 260 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 201
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 200 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 141
Query: 511 aagcca 516
||||||
Sbjct: 140 aagcca 135
>gb|CX653099.1|CX653099 COLD1_63_H12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_H12_A029 3', mRNA sequence
Length = 762
Score = 287 bits (145), Expect = 3e-076
Identities = 355/425 (83%)
Strand = Plus / Minus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 657 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagga 598
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 597 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 538
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 537 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 478
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 477 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 418
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || ||||||||||
Sbjct: 417 agattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgagg 358
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggt 451
| ||||||||||||||||| || ||||| || |||||||| || |||||||| || ||||
Sbjct: 357 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggt 298
Query: 452 tcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggaga 511
| || |||||||||||||||||||| || || | || || |||||||||||||||||||
Sbjct: 297 ttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggaga 238
Query: 512 agcca 516
|||||
Sbjct: 237 agcca 233
>gb|DR093708.1|DR093708 STRR1_10_A05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_A05_A033 3', mRNA sequence
Length = 732
Score = 287 bits (145), Expect = 3e-076
Identities = 355/425 (83%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 39 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagga 98
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 99 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 158
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 159 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 218
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 219 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 278
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || ||||||||||
Sbjct: 279 agattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgagg 338
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggt 451
| ||||||||||||||||| || ||||| || |||||||| || |||||||| || ||||
Sbjct: 339 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggt 398
Query: 452 tcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggaga 511
| || |||||||||||||||||||| || || | || || |||||||||||||||||||
Sbjct: 399 ttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggaga 458
Query: 512 agcca 516
|||||
Sbjct: 459 agcca 463
>gb|DR093789.1|DR093789 STRR1_10_A05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_A05_A033 5', mRNA sequence
Length = 782
Score = 287 bits (145), Expect = 3e-076
Identities = 355/425 (83%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 73 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaagcacaggagga 132
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 133 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 192
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 193 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 252
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 253 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 312
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || ||||||||||
Sbjct: 313 agattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgagg 372
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggt 451
| ||||||||||||||||| || ||||| || |||||||| || |||||||| || ||||
Sbjct: 373 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggt 432
Query: 452 tcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggaga 511
| || |||||||||||||||||||| || || | || || |||||||||||||||||||
Sbjct: 433 ttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggaga 492
Query: 512 agcca 516
|||||
Sbjct: 493 agcca 497
>gb|AL749924.1|AL749924 AL749924 AS Pinus pinaster cDNA clone AS02G01 similar to RP S23,
mRNA sequence
Length = 499
Score = 281 bits (142), Expect = 2e-074
Identities = 355/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 46 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 105
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| ||| ||||| || || | |||||||||||||| | || || |||||||| ||
Sbjct: 106 aaacagctttgggcagataagtcctacaagaagagccatctcggtaacgagtggaagaag 165
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 166 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 225
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 226 aagcagccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaag 285
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 286 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 345
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 346 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 405
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || |||||||||||||| ||||||
Sbjct: 406 tttaaagttgttaaggtgtctggtgtatctttgttagctctcttcaaggagaaaaaggag 465
Query: 511 aagcca 516
||||||
Sbjct: 466 aagcca 471
>gb|AL749992.1|AL749992 AL749992 AS Pinus pinaster cDNA clone AS03E09 similar to RP S23,
mRNA sequence
Length = 503
Score = 281 bits (142), Expect = 2e-074
Identities = 355/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 46 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 105
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| ||| ||||| || || | |||||||||||||| | || || |||||||| ||
Sbjct: 106 aaacagctttgggcagataagtcctacaagaagagccatctcggtaacgagtggaagaag 165
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 166 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 225
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 226 aagcagccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaag 285
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 286 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 345
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 346 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 405
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || |||||||||||||| ||||||
Sbjct: 406 tttaaagttgttaaggtgtctggtgtatctttgttagctctcttcaaggagaaaaaggag 465
Query: 511 aagcca 516
||||||
Sbjct: 466 aagcca 471
>gb|BX254841.1|BX254841 BX254841 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP105G05 similar to 40S RIBOSOMAL PROTEIN
S23, mRNA sequence
Length = 673
Score = 281 bits (142), Expect = 2e-074
Identities = 355/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 89 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 148
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| ||| ||||| || || | |||||||||||||| | || || |||||||| ||
Sbjct: 149 aaacagctttgggcagataagtcctacaagaagagccatctcggtaacgagtggaagaag 208
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 209 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 268
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 269 aagcagccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaag 328
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 329 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 388
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 389 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 448
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || |||||||||||||| ||||||
Sbjct: 449 tttaaagttgttaaggtgtctggtgtatctttgttagctctcttcaaggagaaaaaggag 508
Query: 511 aagcca 516
||||||
Sbjct: 509 aagcca 514
>gb|BX255496.1|BX255496 BX255496 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP006E03 similar to 40S RIBOSOMAL PROTEIN
S23, mRNA sequence
Length = 544
Score = 281 bits (142), Expect = 2e-074
Identities = 355/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 85 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 144
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| ||| ||||| || || | |||||||||||||| | || || |||||||| ||
Sbjct: 145 aaacagctttgggcagataagtcctacaagaagagccatctcggtaacgagtggaagaag 204
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 205 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 264
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 265 aagcagccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaag 324
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 325 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 384
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 385 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 444
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || |||||||||||||| ||||||
Sbjct: 445 tttaaagttgttaaggtgtctggtgtatctttgttagctctcttcaaggagaaaaaggag 504
Query: 511 aagcca 516
||||||
Sbjct: 505 aagcca 510
>gb|CF472285.1|CF472285 RTDS1_5_D10.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_5_D10_A015 5', mRNA sequence
Length = 766
Score = 281 bits (142), Expect = 2e-074
Identities = 355/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 78 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 137
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 138 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 197
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 198 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 257
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 258 aagcagccaaactctgctattcgtaagtgtgcatgagttcagcttatcaagaatggaaag 317
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 318 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 377
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 378 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 437
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 438 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 497
Query: 511 aagcca 516
||||||
Sbjct: 498 aagcca 503
>gb|BX784126.1|BX784126 BX784126 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129E01 similar to 40S ribosomal protein S23,
mRNA sequence
Length = 548
Score = 281 bits (142), Expect = 2e-074
Identities = 355/426 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 17 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 76
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| ||| ||||| || || | |||||||||||||| | || || |||||||| ||
Sbjct: 77 aaacagctttgggcagataagtcctacaagaagagccatctcggtaacgagtggaagaag 136
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 137 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 196
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 197 aagcagccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaag 256
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 257 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 316
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 317 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 376
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || |||||||||||||| ||||||
Sbjct: 377 tttaaagttgttaaggtgtctggtgtatctttgttagctctcttcaaggagaaaaaggag 436
Query: 511 aagcca 516
||||||
Sbjct: 437 aagcca 442
>gb|DR072050.1|DR072050 RTDK1_23_F07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_F07_A029 5', mRNA sequence
Length = 591
Score = 274 bits (138), Expect = 5e-072
Identities = 291/342 (85%)
Strand = Plus / Minus
Query: 175 tacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatctcacgcc 234
|||||||||||||| | || || |||||||| || || |||||||| || ||||| |||
Sbjct: 527 tacaagaagagccatctcggtaacgagtggaagaagccctttgctggttcctctcatgcc 468
Query: 235 aagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggccatccgt 294
|||||||| ||||| || || || ||||||||||||||||||||||| || || || |||
Sbjct: 467 aagggcattgttctcgaaaaaataggtattgaggccaagcagccaaactctgctattcgt 408
Query: 295 aagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaat 354
|||||||| || |||||||| | ||||||||||||||||||||||||||||| || ||
Sbjct: 407 aagtgtgcacgagttcagcttatcaagaatggaaagaagattgctgcctttgttcccaac 348
Query: 355 gatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcgt 414
|||||||| | ||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct: 347 gatggttgtttgaactacatcgaagaaaatgatgaggtcttgattgctggatttgggcga 288
Query: 415 aagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctggt 474
||||| || |||||||| || |||||||| || ||||| || ||||||||||||||||||
Sbjct: 287 aaggggcacgctgtgggtgatattcctggagttaggtttaaagttgttaaggtgtctggt 228
Query: 475 gtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
|| || || | || || ||||||||||||||||||||||||
Sbjct: 227 gtatctttgttagctcttttcaaggagaagaaggagaagcca 186
>gb|BM133664.1|BM133664 NXLV_010_E03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_010_E03 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 739
Score = 266 bits (134), Expect = 1e-069
Identities = 353/426 (82%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 80 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 139
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 140 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 199
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||| ||||||
Sbjct: 200 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtatcgaggcc 259
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
|| |||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 260 aaacagccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaag 319
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 320 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 379
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 380 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 439
Query: 451 ttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggag 510
|| || |||||||||||||||||||| || || | || || ||||||||||||||||||
Sbjct: 440 tttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggag 499
Query: 511 aagcca 516
||||||
Sbjct: 500 aagcca 505
>gb|BQ699113.1|BQ699113 NXRV119_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV119_F03 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 552
Score = 264 bits (133), Expect = 4e-069
Identities = 322/385 (83%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 90 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagga 149
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 150 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 209
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 210 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 269
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 270 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 329
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || ||||||||||
Sbjct: 330 agattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgagg 389
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggt 451
| ||||||||||||||||| || ||||| || |||||||| || |||||||| || ||||
Sbjct: 390 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggt 449
Query: 452 tcaaggttgttaaggtgtctggtgt 476
| || ||||||||||||||||||||
Sbjct: 450 ttaaagttgttaaggtgtctggtgt 474
>gb|BQ700894.1|BQ700894 NXRV112_H01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV112_H01 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 264 bits (133), Expect = 4e-069
Identities = 322/385 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 83 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 142
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 143 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 202
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 203 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 262
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 263 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 322
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 323 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 382
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 383 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 442
Query: 451 ttcaaggttgttaaggtgtctggtg 475
|| || |||||||||||||||||||
Sbjct: 443 tttaaagttgttaaggtgtctggtg 467
>gb|AW981970.1|AW981970 PC22B10 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC22B10, mRNA sequence
Length = 525
Score = 258 bits (130), Expect = 3e-067
Identities = 351/425 (82%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| ||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 84 ccacaatggggaagacgcgtggtatgggagtaggtcgcaagctgaggaatcacaggagga 143
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || ||||||| || |
Sbjct: 144 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacnagtggaagaagc 203
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 204 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 263
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 264 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 323
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || ||| || | | ||||||||||| || ||||||||||
Sbjct: 324 agattgctgcctttgttcccaacgatagtagtttgaactacatcgaagaaaatgatgagg 383
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggt 451
| ||||||||||||||||| || ||||| || |||||||| || |||||||| || ||||
Sbjct: 384 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggt 443
Query: 452 tcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggaga 511
| || |||||||||||||||||||| || || | || || |||||||||||||||||||
Sbjct: 444 ttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggagaagaaggaga 503
Query: 512 agcca 516
|||||
Sbjct: 504 agcca 508
>gb|BQ702661.1|BQ702661 NXSI_131_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_131_B01 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 248 bits (125), Expect = 3e-064
Identities = 316/380 (83%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 78 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 137
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 138 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 197
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 198 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 257
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 258 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 317
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 318 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 377
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 378 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 437
Query: 451 ttcaaggttgttaaggtgtc 470
|| || ||||||||| ||||
Sbjct: 438 tttaaagttgttaagntgtc 457
>gb|AW056621.1|AW056621 ST53G03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST53G03, mRNA sequence
Length = 516
Score = 238 bits (120), Expect = 3e-061
Identities = 318/385 (82%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 61 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagga 120
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 121 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 180
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 181 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 240
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 241 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 300
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || |||| |||||
Sbjct: 301 agattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgttgagg 360
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggt 451
| ||||||||||||||||| || ||||| || |||||||| || |||||||| || ||||
Sbjct: 361 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggt 420
Query: 452 tcaaggttgttaaggtgtctggtgt 476
| || ||||| ||||||||||||
Sbjct: 421 ttaaagttgtnnnggtgtctggtgt 445
>gb|BM157591.1|BM157591 NXLV_021_H11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_021_H11 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 234 bits (118), Expect = 4e-060
Identities = 223/258 (86%)
Strand = Plus / Plus
Query: 259 ggtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtg 318
||||||||||||||||||||||| || || || ||||||||||| || |||||||| |
Sbjct: 27 ggtattgaggccaagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatc 86
Query: 319 aagaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcgag 378
||||||||||||||||||||||||||||| || || |||||||| | |||||||||||
Sbjct: 87 aagaatggaaagaagattgctgcctttgttcccaacgatggttgtttgaactacatcgaa 146
Query: 379 gagaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacatt 438
|| ||||||||||| ||||||||||||||||| || ||||| || |||||||| || |||
Sbjct: 147 gaaaatgatgaggtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatatt 206
Query: 439 cctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaag 498
||||| || ||||| || |||||||||||||||||||| || || | || || ||||||
Sbjct: 207 cctggagttaggtttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaag 266
Query: 499 gagaagaaggagaagcca 516
||||||||||||||||||
Sbjct: 267 gagaagaaggagaagcca 284
>gb|AI812933.1|AI812933 22F2 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 589
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 21 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 80
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 81 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 140
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 141 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 200
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 201 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 260
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 261 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 320
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 321 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 380
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 381 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 440
>gb|AW011021.1|AW011021 ST15G04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST15G04, mRNA sequence
Length = 569
Score = 230 bits (116), Expect = 6e-059
Identities = 318/386 (82%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 103 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 162
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 163 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 222
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 223 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 282
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
|| |||||||| || || || ||||||||||| | |||||| | | ||||||||||||
Sbjct: 283 aaacagccaaactctgctattcgtaagtgtgcaagagttcagtttatcaagaatggaaag 342
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 343 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 402
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || | |
Sbjct: 403 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttang 462
Query: 451 ttcaaggttgttaaggtgtctggtgt 476
|| || |||||||||| |||||||||
Sbjct: 463 tttaaagttgttaaggngtctggtgt 488
>gb|BQ701177.1|BQ701177 NXSI_023_D12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_023_D12 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 505
Score = 230 bits (116), Expect = 6e-059
Identities = 314/380 (82%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| ||||| |||||||| || |||||||| | || ||| | ||||| ||
Sbjct: 70 atggggaagacgcgtggcatgggagcaggtcgcaagctgaggaatcacaggaggaaacaa 129
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| ||||| | |||||||||||||| | || || |||||||| || || |||
Sbjct: 130 ctttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagcccttt 189
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| || ||||| ||||||||||| ||||| || || || |||||||||||||| |||
Sbjct: 190 gctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggccaaacag 249
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || || || ||||||||||| | |||||||| | ||||||||||||||||||
Sbjct: 250 ccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaagaagatt 309
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||||||||| || || |||||||| | ||||||||||| || ||||||||||| |||
Sbjct: 310 gctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgaggtcttg 369
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|||||||||||||| || ||||| || ||||| || || |||||||| || ||||| ||
Sbjct: 370 attgctggatttgggcgaaaggggcacgctgtcggtgatattcctggagttaggtttaaa 429
Query: 457 gttgttaaggtgtctggtgt 476
||||||||||||||||||||
Sbjct: 430 gttgttaaggtgtctggtgt 449
>gb|CX650023.1|CX650023 COLD1_43_B07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_B07_A029 3', mRNA sequence
Length = 793
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 39 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 98
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 99 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 158
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 159 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 218
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 219 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 278
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 279 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 338
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 339 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 398
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 399 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 458
>gb|CX650099.1|CX650099 COLD1_43_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_B07_A029 5', mRNA sequence
Length = 781
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 86 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 145
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 146 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 205
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 206 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 265
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 266 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 325
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 326 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 385
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 386 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 445
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 446 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 505
>gb|DR014264.1|DR014264 HEAT1_24_A03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A03_A029 5', mRNA sequence
Length = 757
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 85 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 144
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 145 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 204
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 205 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 264
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 265 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 324
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 325 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 384
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 385 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 444
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 445 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 504
>gb|DR019950.1|DR019950 STRS1_33_D01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_D01_A034 5', mRNA sequence
Length = 629
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Minus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 533 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 474
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 473 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 414
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 413 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 354
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 353 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 294
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 293 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 234
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 233 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 174
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 173 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 114
>gb|DR052863.1|DR052863 RTCA1_7_H08.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_7_H08_A029 3', mRNA sequence
Length = 715
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 12 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 71
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 72 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 131
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 132 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 191
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 192 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 251
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 252 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 311
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 312 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 371
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 372 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 431
>gb|DR099392.1|DR099392 STRR1_55_F08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_F08_A033 3', mRNA sequence
Length = 784
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 128 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 187
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 188 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 247
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 248 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 307
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 308 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 367
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 368 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 427
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 428 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 487
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 488 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 547
>gb|DR743881.1|DR743881 RTCU1_18_E12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_E12_A029 5', mRNA sequence
Length = 845
Score = 230 bits (116), Expect = 6e-059
Identities = 344/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 157 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 216
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 217 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 276
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 277 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 336
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 337 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 396
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 397 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 456
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 457 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 516
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 517 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 576
>gb|CF665546.1|CF665546 RTCNT1_16_E05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_E05_A029 5', mRNA sequence
Length = 427
Score = 228 bits (115), Expect = 2e-058
Identities = 292/351 (83%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 77 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagga 136
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 137 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 196
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 197 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 256
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 257 agcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 316
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || ||||||||||
Sbjct: 317 agattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgagg 376
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctg 442
| ||||||||||||||||| || ||||| || |||||||| || |||||||
Sbjct: 377 tcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctg 427
>gb|AL750020.1|AL750020 AL750020 AS Pinus pinaster cDNA clone AS03H07 similar to RP S23,
mRNA sequence
Length = 412
Score = 226 bits (114), Expect = 1e-057
Identities = 300/362 (82%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 46 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 105
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| ||| ||||| || || | |||||||||||||| | || || |||||||| ||
Sbjct: 106 aaacagctttgggcagataagtcctacaagaagagccatctcggtaacgagtggaagaag 165
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 166 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 225
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| | |||||||| | ||||||||||||
Sbjct: 226 aagcagccaaactctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaag 285
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 286 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgag 345
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcagg 450
|| ||||||||||||||||| || ||||| || |||||||| || |||||||| || |||
Sbjct: 346 gtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttagg 405
Query: 451 tt 452
||
Sbjct: 406 tt 407
>gb|DR014189.1|DR014189 HEAT1_24_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A03_A029 3', mRNA sequence
Length = 673
Score = 224 bits (113), Expect = 4e-057
Identities = 341/417 (81%)
Strand = Plus / Plus
Query: 100 gggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagagg 159
|||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 1 gggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcagctc 60
Query: 160 tgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgct 219
||||| || || | ||||||||||| || | || || |||||||| ||||| ||||||
Sbjct: 61 tgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaaccctttgct 120
Query: 220 ggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcagcca 279
|| |||||||||||||||||||| ||||| || || || || || |||||||||||||||
Sbjct: 121 ggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcagcca 180
Query: 280 aattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagattgct 339
|| || ||||| | |||||||| | ||||| || | |||||||||||||||||||||
Sbjct: 181 aactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagattgct 240
Query: 340 gcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttgatt 399
|| ||||| || || |||||||| | |||||||| || || ||||| |||||||||||
Sbjct: 241 gcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttgatc 300
Query: 400 gctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaaggtt 459
||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| || |||
Sbjct: 301 gctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaagtt 360
Query: 460 gttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
|||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 361 gttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 417
>gb|BM158598.1|BM158598 NXLV_036_G01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_036_G01 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 355
Score = 222 bits (112), Expect = 2e-056
Identities = 219/255 (85%)
Strand = Plus / Plus
Query: 262 attgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaag 321
|||||||||||||||||||| || || || ||||||||||| || |||||||| | |||
Sbjct: 30 attgaggccaagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaag 89
Query: 322 aatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggag 381
|||||||||||||||||||||||||| || || |||||||| | ||||||||||| ||
Sbjct: 90 aatggaaagaagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaa 149
Query: 382 aatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcct 441
||||||||||| ||||||||||||||||| || ||||| || |||||||| || ||||||
Sbjct: 150 aatgatgaggtcttgattgctggatttgggcgaaaggggcacgctgtgggtgatattcct 209
Query: 442 ggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggag 501
|| || ||||| || |||||||||||||||||||| || || | || || |||||||||
Sbjct: 210 ggagttaggtttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaaggag 269
Query: 502 aagaaggagaagcca 516
||||||||||| |||
Sbjct: 270 aagaaggagaancca 284
>gb|DR052948.1|DR052948 RTCA1_7_H08.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_7_H08_A029 5', mRNA sequence
Length = 729
Score = 222 bits (112), Expect = 2e-056
Identities = 343/420 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || | |||||| | || ||| | ||||| |||
Sbjct: 146 atggggaagacgcgtggtatgggagcaggtctcaagctgaggaatcacaggaggaagcag 205
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 206 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 265
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 266 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 325
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 326 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 385
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 386 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 445
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 446 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 505
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||||||| || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 506 gttgttaaggtatccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 565
>gb|CO201192.1|CO201192 RTCNT2_4_E06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_E06_A029 3', mRNA sequence
Length = 560
Score = 218 bits (110), Expect = 2e-055
Identities = 284/342 (83%)
Strand = Plus / Plus
Query: 175 tacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatctcacgcc 234
||||||||||| || | || || |||||||| ||||| |||||||| ||||||||||||
Sbjct: 17 tacaagaagagtcatctcggtaacgagtggaagaaaccctttgctggttcatctcacgcc 76
Query: 235 aagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggccatccgt 294
|||||||| ||||| || || || || || ||||||||||||||||| || ||||| |
Sbjct: 77 aagggcattgttcttgaaaaaataggaatcgaggccaagcagccaaactccgccattagg 136
Query: 295 aagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaat 354
|||||||| | ||||| || | ||||||||||||||||||||||| ||||| || ||
Sbjct: 137 aagtgtgcaagagttcaacttattaagaatggaaagaagattgctgcttttgttcccaac 196
Query: 355 gatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcgt 414
|||||||| | |||||||| || || ||||| ||||||||||| ||||||||||| ||
Sbjct: 197 gatggttgtttgaactacattgaagaaaatgacgaggtgttgatcgctggatttgggcga 256
Query: 415 aagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctggt 474
||||| ||||| |||||||| |||||||| || ||||| || ||||||||||| || |||
Sbjct: 257 aaggggcatgccgtgggagatattcctggagttaggtttaaagttgttaaggtatccggt 316
Query: 475 gtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
|| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 317 gtatccttgttagcactattcaaggagaaaaaggagaagcca 358
>gb|CO201272.1|CO201272 RTCNT2_4_E06.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_E06_A029 5', mRNA sequence
Length = 571
Score = 218 bits (110), Expect = 2e-055
Identities = 266/318 (83%)
Strand = Plus / Plus
Query: 199 gagtggaaaaaaccttttgctggatcatctcacgccaagggcatcgttctggagaagatt 258
|||||||| ||||| |||||||| |||||||||||||||||||| ||||| || || ||
Sbjct: 15 gagtggaagaaaccctttgctggttcatctcacgccaagggcattgttcttgaaaaaata 74
Query: 259 ggtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtg 318
|| || ||||||||||||||||| || ||||| | |||||||| | ||||| || |
Sbjct: 75 ggaatcgaggccaagcagccaaactccgccattaggaagtgtgcaagagttcaacttatt 134
Query: 319 aagaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcgag 378
||||||||||||||||||||||| ||||| || || |||||||| | |||||||| ||
Sbjct: 135 aagaatggaaagaagattgctgcttttgttcccaacgatggttgtttgaactacattgaa 194
Query: 379 gagaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacatt 438
|| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||||| |||
Sbjct: 195 gaaaatgacgaggtgttgatcgctggatttgggcgaaaggggcatgccgtgggagatatt 254
Query: 439 cctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaag 498
||||| || ||||| || ||||||||||| || ||||| || || | ||||| ||||||
Sbjct: 255 cctggagttaggtttaaagttgttaaggtatccggtgtatccttgttagcactattcaag 314
Query: 499 gagaagaaggagaagcca 516
||||| ||||||||||||
Sbjct: 315 gagaaaaaggagaagcca 332
>gb|BX255132.1|BX255132 BX255132 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP111E05 similar to 40S RIBOSOMAL PROTEIN
S23, mRNA sequence
Length = 357
Score = 214 bits (108), Expect = 4e-054
Identities = 291/352 (82%)
Strand = Plus / Plus
Query: 101 ggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggt 160
||||||| |||||||||||||| || |||||||| | || ||| | ||||| ||| |
Sbjct: 1 ggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaaacagcttt 60
Query: 161 gggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgctg 220
|||| || || | |||||||||||||| | || || |||||||| || || |||||||
Sbjct: 61 gggcagataagtcctacaagaagagccatctcggtaacgagtggaagaagccctttgctg 120
Query: 221 gatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccaa 280
| || ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||
Sbjct: 121 gttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggccaagcagccaa 180
Query: 281 attcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctg 340
| || || || ||||||||||| | |||||||| | ||||||||||||||||||||||
Sbjct: 181 actctgctattcgtaagtgtgcaagagttcagcttatcaagaatggaaagaagattgctg 240
Query: 341 cctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttgattg 400
||||||| || || |||||||| | ||||||||||| || ||||||||||| |||||||
Sbjct: 241 cctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgaggtcttgattg 300
Query: 401 ctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggtt 452
|||||||||| || ||||| || |||||||| || |||||||| || |||||
Sbjct: 301 ctggatttgggcgaaaggggcacgctgtgggtgatattcctggagttaggtt 352
>gb|CF665468.1|CF665468 RTCNT1_16_E05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_E05_A029 3', mRNA sequence
Length = 444
Score = 214 bits (108), Expect = 4e-054
Identities = 228/268 (85%)
Strand = Plus / Plus
Query: 175 tacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatctcacgcc 234
|||||||||||||| | || || |||||||| || || |||||||| || ||||| |||
Sbjct: 177 tacaagaagagccatctcggtaacgagtggaagaagccctttgctggttcctctcatgcc 236
Query: 235 aagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggccatccgt 294
|||||||| ||||| || || || ||||||||||||||||||||||| || || || |||
Sbjct: 237 aagggcattgttctcgaaaaaataggtattgaggccaagcagccaaactctgctattcgt 296
Query: 295 aagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaat 354
|||||||| || |||||||| | ||||||||||||||||||||||||||||| || ||
Sbjct: 297 aagtgtgcacgagttcagcttatcaagaatggaaagaagattgctgcctttgttcccaac 356
Query: 355 gatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcgt 414
|||||||| | ||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct: 357 gatggttgtttgaactacatcgaagaaaatgatgaggtcttgattgctggatttgggcga 416
Query: 415 aagggtcatgctgtgggagacattcctg 442
||||| || |||||||| || |||||||
Sbjct: 417 aaggggcacgctgtgggtgatattcctg 444
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagc 122
|||| ||||||||||| ||||||||||||||
Sbjct: 91 ccacaatggggaagacgcgtggtatgggagc 121
>gb|BM367354.1|BM367354 NXLV_048_B05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_048_B05 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 212 bits (107), Expect = 1e-053
Identities = 239/283 (84%)
Strand = Plus / Plus
Query: 234 caagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggccatccg 293
||||||||| ||||| || || || ||||| | |||||| |||||||| || || || ||
Sbjct: 18 caagggcattgttctcgaaaaaataggtatcggggccaaacagccaaactctgctattcg 77
Query: 294 taagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaa 353
||||||||| | |||||||| | ||||||||||||||||||||||||||||| || ||
Sbjct: 78 taagtgtgcaagagttcagcttatcaagaatggaaagaagattgctgcctttgttcccaa 137
Query: 354 tgatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcg 413
|||||||| | ||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct: 138 cgatggttgtttgaactacatcgaagaaaatgatgaggtcttgattgctggatttgggcg 197
Query: 414 taagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctgg 473
||||| || |||||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 198 aaaggggcacgctgtgggtgatattcctggagttaggtttaaagttgttaaggtgtctgg 257
Query: 474 tgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||| || || | || || ||||||||||||||||||||||||
Sbjct: 258 tgtatctttgttagctcttttcaaggagaagaaggagaagcca 300
>gb|BE496569.1|BE496569 NXCI_020_G03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_020_G03 5' similar to Arabidopsis
thaliana sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 204 bits (103), Expect = 4e-051
Identities = 217/258 (84%)
Strand = Plus / Plus
Query: 259 ggtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtg 318
||||||||||||||||||||||| | || || |||||||||| || |||||||| |
Sbjct: 40 ggtattgaggccaagcagccaaacnctgctatnngtaagtgtgcacgagttcagcttatc 99
Query: 319 aagaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcgag 378
|||||||||||||||||||||| |||||| || || |||||||| | |||||||||||
Sbjct: 100 aagaatggaaagaagattgctgnctttgttcccaacgatggttgtttgaactacatcgaa 159
Query: 379 gagaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacatt 438
|| ||||||||| |||||||||||||||| || ||||| || |||||||| || |||
Sbjct: 160 gaaaatgatgagnncttgattgctggatttgnncgnaaggggcacgctgtgggtgatatt 219
Query: 439 cctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaag 498
||||| || ||||| || |||||||||||||||||||| || || | || || ||||||
Sbjct: 220 cctggagttaggtttaaagttgttaaggtgtctggtgtatctttgttagctcttttcaag 279
Query: 499 gagaagaaggagaagcca 516
||||||||||||||||||
Sbjct: 280 gagaagaaggagaagcca 297
>gb|BG275153.1|BG275153 NXSI_140_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_D03 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 204 bits (103), Expect = 4e-051
Identities = 289/353 (81%)
Strand = Plus / Plus
Query: 91 gccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagg 150
||||| ||||||||||| |||||||||||||| || |||||||| | || ||| | |||
Sbjct: 78 gccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagg 137
Query: 151 aaccagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaa 210
|| || ||||| ||||| | |||||||||||||| | || || |||||||| ||
Sbjct: 138 aaacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaag 197
Query: 211 ccttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcc 270
|| |||||||| || ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 198 ccctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcc 257
Query: 271 aagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaag 330
||||||||||| || || || ||||||||||| || |||||||| | ||||||||||||
Sbjct: 258 aagcagccaaactctgctattcgtaagtgtgcacgagttcagcttatcaagaatggaaag 317
Query: 331 aagattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgag 390
||||||||||||||||| || || |||||||| | ||||||||||| || ||||||||
Sbjct: 318 aagattgctgcctttgttcccaacgatggttgtttgaactacatcgaagaaaatgatgan 377
Query: 391 gtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctgg 443
||||||||||||||||| || || | || |||||||| || ||||||||
Sbjct: 378 nncttgattgctggatttgggcgaaanngncacgctgtgggtgatattcctgg 430
>gb|AW497797.1|AW497797 PC02D04 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC02D04, mRNA sequence
Length = 480
Score = 202 bits (102), Expect = 1e-050
Identities = 288/352 (81%)
Strand = Plus / Plus
Query: 92 ccaccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcagga 151
|||| ||||||||||| |||||||||||||| || |||||||| | || ||| | ||||
Sbjct: 111 ccacaatggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggagga 170
Query: 152 accagaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaac 211
| || ||||| ||||| | |||||||||||||| | || || |||||||| || |
Sbjct: 171 aacaactttgggcagacaagtcctacaagaagagccatctcggtaacgagtggaagaagc 230
Query: 212 cttttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggcca 271
| |||||||| || ||||| ||||||||||| ||||| || || || |||||||||||||
Sbjct: 231 cctttgctggttcctctcatgccaagggcattgttctcgaaaaaataggtattgaggcca 290
Query: 272 agcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaaga 331
|||||||||| || || || ||||||||||| || |||||||| | |||||||||||||
Sbjct: 291 agcagccaaactcagctattcgtaagtgtgcacgagttcagcttatcaagaatggaaaga 350
Query: 332 agattgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgagg 391
|||||||||||||||| || || |||||||| | ||||||||||| || |||||||||
Sbjct: 351 agattgctgcctttgttcccaacgatggttgtttgaactacatcgangaaaatgatgagn 410
Query: 392 tgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctgg 443
| ||||||||||||||| || ||||| || ||||| | || ||||||||
Sbjct: 411 tcntgattgctggatttgngcgaaaggggcacgctgtnngtgatattcctgg 462
>gb|BF609043.1|BF609043 NXSI_039_G03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_039_G03 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 519
Score = 202 bits (102), Expect = 1e-050
Identities = 338/420 (80%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 99 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 158
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 159 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 218
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || ||| ||||||||
Sbjct: 219 gctggttcatctcacgccaagggcattgttcttgaaaaaatnnnnatcgagnccaagcag 278
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 279 ccaaactccgccattannaagtgtgcaagagttcaacttattaagaatggaaagaagatt 338
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 339 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 398
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaag 456
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct: 399 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtttaaa 458
Query: 457 gttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcca 516
||||||| | | || ||||| || || | ||||| ||||||||||| ||||||||||||
Sbjct: 459 gttgttangntntccggtgtatccttgttagcactattcaaggagaaaaaggagaagcca 518
>gb|AL749999.1|AL749999 AL749999 AS Pinus pinaster cDNA clone AS03F07 similar to RP S23,
mRNA sequence
Length = 411
Score = 192 bits (97), Expect = 1e-047
Identities = 214/253 (84%)
Strand = Plus / Plus
Query: 200 agtggaaaaaaccttttgctggatcatctcacgccaagggcatcgttctggagaagattg 259
||||||| || || |||||||| || ||||| ||||||||||| ||||| || || || |
Sbjct: 156 agtggaagaagccctttgctggttcctctcatgccaagggcattgttctcgaaaaaatag 215
Query: 260 gtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtga 319
|||||||||||||||||||||| || || || ||||||||||| | |||||||| | |
Sbjct: 216 gtattgaggccaagcagccaaactctgctattcgtaagtgtgcaagagttcagcttatca 275
Query: 320 agaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcgagg 379
|||||||||||||||||||||||||||| || || |||||||| | ||||||||||| |
Sbjct: 276 agaatggaaagaagattgctgcctttgttcccaacgatggttgtttgaactacatcgaag 335
Query: 380 agaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattc 439
| ||||||||||| ||||||||||||||||| || ||||| || |||| ||| || ||||
Sbjct: 336 aaaatgatgaggtcttgattgctggatttgggcgaaaggggcacgctgcgggtgatattc 395
Query: 440 ctggtgtcaggtt 452
|||| || |||||
Sbjct: 396 ctggagttaggtt 408
>gb|BQ702406.1|BQ702406 NXSI_128_C09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_C09 5' similar to Arabidopsis thaliana
sequence At5g02960 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 190 bits (96), Expect = 5e-047
Identities = 291/356 (81%)
Strand = Plus / Plus
Query: 97 atggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccag 156
||||||||||| |||||||||||||| || |||||||| | || ||| | ||||| |||
Sbjct: 99 atggggaagacgcgtggtatgggagcaggtcgcaagctgaggaatcacaggaggaagcag 158
Query: 157 aggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctttt 216
||||| || || | ||||||||||| || | || || |||||||| ||||| |||
Sbjct: 159 ctctgggcagataagtcctacaagaagagtcatctcggtaacgagtggaagaaacccttt 218
Query: 217 gctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagcag 276
||||| |||||||||||||||||||| ||||| || || || || || ||||||||||||
Sbjct: 219 gctggttcatctcacgccaagggcattgttcttgaaaaaataggaatcgaggccaagcag 278
Query: 277 ccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagatt 336
||||| || ||||| | |||||||| | ||||| || | ||||||||||||||||||
Sbjct: 279 ccaaactccgccattaggaagtgtgcaagagttcaacttattaagaatggaaagaagatt 338
Query: 337 gctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttg 396
||||| ||||| || || |||||||| | |||||||| || || ||||| |||||||||
Sbjct: 339 gctgcttttgttcccaacgatggttgtttgaactacattgaagaaaatgacgaggtgttg 398
Query: 397 attgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggtt 452
|| ||||||||||| || ||||| ||||| |||||||| |||||||| || |||||
Sbjct: 399 atcgctggatttgggcgaaaggggcatgccgtgggagatattcctggagttaggtt 454
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,713
Number of Sequences: 355925
Number of extensions: 89713
Number of successful extensions: 25358
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25115
Number of HSP's gapped (non-prelim): 198
length of query: 708
length of database: 217,277,237
effective HSP length: 19
effective length of query: 689
effective length of database: 210,514,662
effective search space: 145044602118
effective search space used: 145044602118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)