BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.2
(767 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF778103.1|BF778103 NXSI_077_B09_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|BQ634826.1|BQ634826 NXRV073_F06_F NXRV (Nsf Xylem Root w... 50 1e-004
gb|CD025292.1|CD025292 NXSI_038_G01_F NXSI (Nsf Xylem Side ... 50 1e-004
gb|CF387555.1|CF387555 RTDR1_20_H09.g1_A015 Loblolly pine r... 50 1e-004
gb|CF392566.1|CF392566 RTDR3_6_H08.g1_A022 Loblolly pine ro... 50 1e-004
gb|CF393792.1|CF393792 RTDS2_1_H03.b1_A021 Drought-stressed... 50 1e-004
gb|CF397351.1|CF397351 RTDS3_3_C07.b2_A022 Drought-stressed... 50 1e-004
gb|CF400524.1|CF400524 RTWW1_6_G05.b1_A015 Well-watered lob... 50 1e-004
gb|CF401426.1|CF401426 RTWW1_12_D12.g1_A015 Well-watered lo... 50 1e-004
gb|CF401472.1|CF401472 RTWW1_12_A01.g1_A015 Well-watered lo... 50 1e-004
gb|CF401848.1|CF401848 RTWW1_15_H10.g1_A015 Well-watered lo... 50 1e-004
gb|CF402129.1|CF402129 RTWW1_20_H10.g1_A015 Well-watered lo... 50 1e-004
gb|CF402334.1|CF402334 RTWW1_19_C08.g1_A015 Well-watered lo... 50 1e-004
gb|CF402530.1|CF402530 RTWW1_21_E07.b1_A015 Well-watered lo... 50 1e-004
gb|CF403030.1|CF403030 RTWW1_24_C03.g1_A015 Well-watered lo... 50 1e-004
gb|CF663610.1|CF663610 RTCNT1_4_B12.b1_A029 Root control Pi... 50 1e-004
gb|CF664452.1|CF664452 RTCNT1_9_G10.g1_A029 Root control Pi... 50 1e-004
gb|CF672087.1|CF672087 RTCNT1_61_F07.b1_A029 Root control P... 50 1e-004
gb|CN785934.1|CN785934 EST784625 Sequencing ESTs from loblo... 50 1e-004
gb|CO167407.1|CO167407 FLD1_68_F05.g1_A029 Root flooded Pin... 50 1e-004
gb|CO169802.1|CO169802 NDL1_9_F01.g1_A029 Needles control P... 50 1e-004
gb|CO174029.1|CO174029 NDL1_41_F06.b1_A029 Needles control ... 50 1e-004
gb|CO174810.1|CO174810 NDL1_46_A05.g1_A029 Needles control ... 50 1e-004
gb|CO175782.1|CO175782 NDL1_57_A10.b1_A029 Needles control ... 50 1e-004
gb|CO411881.1|CO411881 EST842266 Sequencing ESTs from loblo... 50 1e-004
gb|CO364161.1|CO364161 RTK1_14_C04.b1_A029 Roots minus pota... 50 1e-004
gb|CV034899.1|CV034899 RTNACL1_12_G12.b1_A029 Roots plus ad... 50 1e-004
gb|CV135693.1|CV135693 EST846902 Sequencing ESTs from loblo... 50 1e-004
gb|CV136186.1|CV136186 EST847395 Sequencing ESTs from loblo... 50 1e-004
gb|CV139075.1|CV139075 EST850284 Sequencing ESTs from loblo... 50 1e-004
gb|CV143274.1|CV143274 EST854483 Sequencing ESTs from loblo... 50 1e-004
gb|DN457375.1|DN457375 EST953174 Sequencing ESTs from loblo... 50 1e-004
gb|DN457480.1|DN457480 EST953279 Sequencing ESTs from loblo... 50 1e-004
gb|DN459053.1|DN459053 EST954852 Sequencing ESTs from loblo... 50 1e-004
gb|DN459464.1|DN459464 EST955263 Sequencing ESTs from loblo... 50 1e-004
gb|DN459618.1|DN459618 EST955417 Sequencing ESTs from loblo... 50 1e-004
gb|DN462573.1|DN462573 EST958372 Sequencing ESTs from loblo... 50 1e-004
gb|DN609794.1|DN609794 EST962844 Subtracted pine embryo lib... 50 1e-004
gb|DR014116.1|DR014116 HEAT1_23_B09.g1_A029 Root at 37 C fo... 50 1e-004
gb|DR015284.1|DR015284 STRS1_2_C09.g1_A034 Shoot tip pitch ... 50 1e-004
gb|DR015288.1|DR015288 STRS1_2_D01.g1_A034 Shoot tip pitch ... 50 1e-004
gb|DR047641.1|DR047641 RTBOR1_2_A03.g1_A029 Roots plus adde... 50 1e-004
gb|DR057312.1|DR057312 RTNIT1_5_C02.b1_A029 Roots minus nit... 50 1e-004
gb|DR057391.1|DR057391 RTNIT1_5_C02.g1_A029 Roots minus nit... 50 1e-004
gb|DR059749.1|DR059749 RTNIT1_19_C04.g1_A029 Roots minus ni... 50 1e-004
gb|DR081799.1|DR081799 RTFEPL1_32_A02.g1_A029 Roots plus ad... 50 1e-004
gb|DR093308.1|DR093308 STRR1_7_A07.g1_A033 Stem Response Re... 50 1e-004
gb|DR167929.1|DR167929 RTPHOS1_22_B12.b1_A029 Roots minus p... 50 1e-004
gb|DR168335.1|DR168335 RTPHOS1_24_F09.g1_A029 Roots minus p... 50 1e-004
gb|DR179179.1|DR179179 RTMNUT1_16_B06.g1_A029 Roots minus m... 50 1e-004
gb|DR179697.1|DR179697 RTMNUT1_23_G02.g2_A029 Roots minus m... 50 1e-004
gb|DR181930.1|DR181930 RTMNUT1_41_H04.g1_A029 Roots minus m... 50 1e-004
gb|DR182243.1|DR182243 RTMNUT1_43_F08.g1_A029 Roots minus m... 50 1e-004
gb|DR682837.1|DR682837 EST1072912 Normalized pine embryo li... 50 1e-004
gb|DR686113.1|DR686113 EST1076191 Normalized pine embryo li... 50 1e-004
gb|DR690514.1|DR690514 EST1080600 Normalized pine embryo li... 50 1e-004
gb|DR742773.1|DR742773 RTCU1_6_H10.g2_A029 Roots plus added... 50 1e-004
gb|DR744190.1|DR744190 RTCU1_20_F09.g1_A029 Roots plus adde... 50 1e-004
gb|DT624597.1|DT624597 EST1158932 Sequencing ESTs from lobl... 50 1e-004
gb|DT625433.1|DT625433 EST1159708 Sequencing ESTs from lobl... 50 1e-004
gb|DT626760.1|DT626760 EST1159836 Sequencing ESTs from lobl... 50 1e-004
gb|DR098037.1|DR098037 STRR1_38_F01.g1_A033 Stem Response R... 48 5e-004
gb|DT626261.1|DT626261 EST1158185 Sequencing ESTs from lobl... 46 0.002
gb|CO157964.1|CO157964 FLD1_3_A05.g1_A029 Root flooded Pinu... 44 0.008
gb|DR081734.1|DR081734 RTFEPL1_32_A02.b1_A029 Roots plus ad... 44 0.008
gb|BG318093.1|BG318093 NXPV_010_D06_F NXPV (Nsf Xylem Plani... 42 0.033
>gb|BF778103.1|BF778103 NXSI_077_B09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_077_B09 5' similar to Arabidopsis thaliana
sequence At1g27310 similar to nuclear transport factor 2
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 314
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 69 atggatccggacacagtggcgaaggccttcgtggaccactactac 113
>gb|BQ634826.1|BQ634826 NXRV073_F06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV073_F06 5' similar to Arabidopsis thaliana
sequence At1g27970 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 769
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 83 atggatccggacacagtggcgaaggccttcgtggaccactactac 127
>gb|CD025292.1|CD025292 NXSI_038_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_038_G01 5' similar to Arabidopsis thaliana
sequence At1g27310 similar to nuclear transport factor 2
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 170
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 53 atggatccggacacagtggcgaaggccttcgtggaccactactac 97
>gb|CF387555.1|CF387555 RTDR1_20_H09.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_20_H09_A015 5', mRNA
sequence
Length = 709
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 62 atggatccggacacagtggcgaaggccttcgtggaccactactac 106
>gb|CF392566.1|CF392566 RTDR3_6_H08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_6_H08_A022 5', mRNA
sequence
Length = 669
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 55 atggatccggacacagtggcgaaggccttcgtggaccactactac 99
>gb|CF393792.1|CF393792 RTDS2_1_H03.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_H03_A021 3', mRNA sequence
Length = 604
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 567 atggatccggacacagtggcgaaggccttcgtggaccactactac 523
>gb|CF397351.1|CF397351 RTDS3_3_C07.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_C07_A022 3', mRNA sequence
Length = 704
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 608 atggatccggacacagtggcgaaggccttcgtggaccactactac 564
>gb|CF400524.1|CF400524 RTWW1_6_G05.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_G05_A015 3', mRNA sequence
Length = 529
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 433 atggatccggacacagtggcgaaggccttcgtggaccactactac 389
>gb|CF401426.1|CF401426 RTWW1_12_D12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_12_D12_A015 5', mRNA sequence
Length = 737
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 90 atggatccggacacagtggcgaaggccttcgtggaccactactac 134
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 204 gctgtatcaggagacctccatgctcaccttcgagggccagaag 246
|||||||||||||||||||||| | || || ||||| ||||||
Sbjct: 170 gctgtatcaggagacctccatgatgacttttgaggggcagaag 212
>gb|CF401472.1|CF401472 RTWW1_12_A01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_12_A01_A015 5', mRNA sequence
Length = 635
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 62 atggatccggacacagtggcgaaggccttcgtggaccactactac 106
>gb|CF401848.1|CF401848 RTWW1_15_H10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_15_H10_A015 5', mRNA sequence
Length = 683
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 70 atggatccggacacagtggcgaaggccttcgtggaccactactac 114
>gb|CF402129.1|CF402129 RTWW1_20_H10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_H10_A015 5', mRNA sequence
Length = 645
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 43 atggatccggacacagtggcgaaggccttcgtggaccactactac 87
>gb|CF402334.1|CF402334 RTWW1_19_C08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_19_C08_A015 5', mRNA sequence
Length = 776
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 169 atggatccggacacagtggcgaaggccttcgtggaccactactac 213
>gb|CF402530.1|CF402530 RTWW1_21_E07.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_E07_A015 3', mRNA sequence
Length = 717
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 629 atggatccggacacagtggcgaaggccttcgtggaccactactac 585
>gb|CF403030.1|CF403030 RTWW1_24_C03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_24_C03_A015 5', mRNA sequence
Length = 663
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 61 atggatccggacacagtggcgaaggccttcgtggaccactactac 105
>gb|CF663610.1|CF663610 RTCNT1_4_B12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_B12_A029 3', mRNA sequence
Length = 746
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 650 atggatccggacacagtggcgaaggccttcgtggaccactactac 606
>gb|CF664452.1|CF664452 RTCNT1_9_G10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_G10_A029 5', mRNA sequence
Length = 752
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 175 atggatccggacacagtggcgaaggccttcgtggaccactactac 219
>gb|CF672087.1|CF672087 RTCNT1_61_F07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_61_F07_A029 3', mRNA sequence
Length = 798
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 702 atggatccggacacagtggcgaaggccttcgtggaccactactac 658
>gb|CN785934.1|CN785934 EST784625 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB547 5' end, mRNA sequence
Length = 868
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 106 atggatccggacacagtggcgaaggccttcgtggaccactactac 150
>gb|CO167407.1|CO167407 FLD1_68_F05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_F05_A029 5', mRNA sequence
Length = 866
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 86 atggatccggacacagtggcgaaggccttcgtggaccactactac 130
>gb|CO169802.1|CO169802 NDL1_9_F01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_F01_A029 5', mRNA sequence
Length = 660
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 32 atggatccggacacagtggcgaaggccttcgtggaccactactac 76
>gb|CO174029.1|CO174029 NDL1_41_F06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_F06_A029 3', mRNA sequence
Length = 756
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 672 atggatccggacacagtggcgaaggccttcgtggaccactactac 628
>gb|CO174810.1|CO174810 NDL1_46_A05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_46_A05_A029 5', mRNA sequence
Length = 798
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 69 atggatccggacacagtggcgaaggccttcgtggaccactactac 113
>gb|CO175782.1|CO175782 NDL1_57_A10.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_57_A10_A029 3', mRNA sequence
Length = 767
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 671 atggatccggacacagtggcgaaggccttcgtggaccactactac 627
>gb|CO411881.1|CO411881 EST842266 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALQ14 5' end, mRNA sequence
Length = 879
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 109 atggatccggacacagtggcgaaggccttcgtggaccactactac 153
>gb|CO364161.1|CO364161 RTK1_14_C04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_C04_A029 3', mRNA sequence
Length = 854
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 764 atggatccggacacagtggcgaaggccttcgtggaccactactac 720
>gb|CV034899.1|CV034899 RTNACL1_12_G12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_12_G12_A029 3', mRNA sequence
Length = 746
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 694 atggatccggacacagtggcgaaggccttcgtggaccactactac 650
>gb|CV135693.1|CV135693 EST846902 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICMF36 5' end, mRNA sequence
Length = 914
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 35 atggatccggacacagtggcgaaggccttcgtggaccactactac 79
>gb|CV136186.1|CV136186 EST847395 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIA827 5' end, mRNA sequence
Length = 790
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 106 atggatccggacacagtggcgaaggccttcgtggaccactactac 150
>gb|CV139075.1|CV139075 EST850284 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBA91 5' end, mRNA sequence
Length = 790
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 106 atggatccggacacagtggcgaaggccttcgtggaccactactac 150
>gb|CV143274.1|CV143274 EST854483 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPICQ86 5' end, mRNA sequence
Length = 949
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 108 atggatccggacacagtggcgaaggccttcgtggaccactactac 152
>gb|DN457375.1|DN457375 EST953174 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGZ20 5' end, mRNA sequence
Length = 893
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 35 atggatccggacacagtggcgaaggccttcgtggaccactactac 79
>gb|DN457480.1|DN457480 EST953279 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH035 5' end, mRNA sequence
Length = 865
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 82 atggatccggacacagtggcgaaggccttcgtggaccactactac 126
>gb|DN459053.1|DN459053 EST954852 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHI78 5' end, mRNA sequence
Length = 915
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 106 atggatccggacacagtggcgaaggccttcgtggaccactactac 150
>gb|DN459464.1|DN459464 EST955263 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHN44 5' end, mRNA sequence
Length = 875
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 101 atggatccggacacagtggcgaaggccttcgtggaccactactac 145
>gb|DN459618.1|DN459618 EST955417 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHP18 5' end, mRNA sequence
Length = 791
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 202 atggatccggacacagtggcgaaggccttcgtggaccactactac 246
>gb|DN462573.1|DN462573 EST958372 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIO06 5' end, mRNA sequence
Length = 755
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 104 atggatccggacacagtggcgaaggccttcgtggaccactactac 148
>gb|DN609794.1|DN609794 EST962844 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAH58, mRNA sequence
Length = 687
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 472 atggatccggacacagtggcgaaggccttcgtggaccactactac 428
>gb|DR014116.1|DR014116 HEAT1_23_B09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_23_B09_A029 5', mRNA sequence
Length = 838
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 67 atggatccggacacagtggcgaaggccttcgtggaccactactac 111
>gb|DR015284.1|DR015284 STRS1_2_C09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_C09_A034 5', mRNA sequence
Length = 896
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 730 atggatccggacacagtggcgaaggccttcgtggaccactactac 686
>gb|DR015288.1|DR015288 STRS1_2_D01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_D01_A034 5', mRNA sequence
Length = 874
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 146 atggatccggacacagtggcgaaggccttcgtggaccactactac 190
>gb|DR047641.1|DR047641 RTBOR1_2_A03.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_2_A03_A029 5', mRNA sequence
Length = 599
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 74 atggatccggacacagtggcgaaggccttcgtggaccactactac 118
>gb|DR057312.1|DR057312 RTNIT1_5_C02.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_C02_A029 3', mRNA sequence
Length = 896
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 806 atggatccggacacagtggcgaaggccttcgtggaccactactac 762
>gb|DR057391.1|DR057391 RTNIT1_5_C02.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_C02_A029 5', mRNA sequence
Length = 828
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 816 atggatccggacacagtggcgaaggccttcgtggaccactactac 772
>gb|DR059749.1|DR059749 RTNIT1_19_C04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_C04_A029 5', mRNA sequence
Length = 852
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 825 atggatccggacacagtggcgaaggccttcgtggaccactactac 781
>gb|DR081799.1|DR081799 RTFEPL1_32_A02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_A02_A029 5', mRNA sequence
Length = 723
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 76 atggatccggacacagtggcgaaggccttcgtggaccactactac 120
>gb|DR093308.1|DR093308 STRR1_7_A07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_A07_A033 5', mRNA sequence
Length = 895
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 77 atggatccggacacagtggcgaaggccttcgtggaccactactac 121
>gb|DR167929.1|DR167929 RTPHOS1_22_B12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_22_B12_A029 3', mRNA sequence
Length = 685
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 611 atggatccggacacagtggcgaaggccttcgtggaccactactac 567
>gb|DR168335.1|DR168335 RTPHOS1_24_F09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_24_F09_A029 5', mRNA sequence
Length = 680
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 76 atggatccggacacagtggcgaaggccttcgtggaccactactac 120
>gb|DR179179.1|DR179179 RTMNUT1_16_B06.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_B06_A029 5', mRNA sequence
Length = 793
Score = 50.1 bits (25), Expect = 1e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 124 atggacccggacgcggtggcgaaagccttcgtggagcactactac 168
||||| |||||| | |||||||| ||||||||||| |||||||||
Sbjct: 84 atggatccggacacagtggcgaaggccttcgtggaccactactac 128
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 86,411
Number of Sequences: 355925
Number of extensions: 86411
Number of successful extensions: 25183
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24989
Number of HSP's gapped (non-prelim): 194
length of query: 767
length of database: 217,277,237
effective HSP length: 19
effective length of query: 748
effective length of database: 210,514,662
effective search space: 157464967176
effective search space used: 157464967176
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)