BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.2
(1019 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO165913.1|CO165913 FLD1_58_C02.b1_A029 Root flooded Pin... 76 3e-012
gb|DR161213.1|DR161213 RTFE1_10_B09.g1_A029 Roots minus iro... 76 3e-012
gb|DR694280.1|DR694280 EST1084371 Normalized pine embryo li... 76 3e-012
gb|DT638813.1|DT638813 EST1153744 Normalized pine embryo li... 76 3e-012
gb|CF478051.1|CF478051 RTWW3_17_D11.g1_A022 Well-watered lo... 74 1e-011
gb|CO167745.1|CO167745 FLD1_70_H06.g1_A029 Root flooded Pin... 74 1e-011
gb|DR080245.1|DR080245 RTFEPL1_21_H01.b1_A029 Roots plus ad... 74 1e-011
gb|DR119795.1|DR119795 RTMG1_25_C09.g2_A029 Roots minus mag... 74 1e-011
gb|DR120259.1|DR120259 RTMG1_28_C03.g2_A029 Roots minus mag... 74 1e-011
gb|DR080318.1|DR080318 RTFEPL1_21_H01.g1_A029 Roots plus ad... 70 2e-010
gb|DR161131.1|DR161131 RTFE1_10_B09.b1_A029 Roots minus iro... 70 2e-010
gb|CO368414.1|CO368414 RTK1_40_B07.g1_A029 Roots minus pota... 68 8e-010
gb|CF392716.1|CF392716 RTDR3_5_C08.g1_A022 Loblolly pine ro... 66 3e-009
gb|CF394711.1|CF394711 RTDS2_7_F10.b1_A021 Drought-stressed... 66 3e-009
gb|CF395475.1|CF395475 RTDS2_11_F03.g1_A021 Drought-stresse... 66 3e-009
gb|CF476981.1|CF476981 RTWW3_5_F05.b1_A022 Well-watered lob... 66 3e-009
gb|CF477106.1|CF477106 RTWW3_5_F05.g1_A022 Well-watered lob... 66 3e-009
gb|CX647889.1|CX647889 COLD1_25_D11.b1_A029 Root cold Pinus... 66 3e-009
gb|CX652773.1|CX652773 COLD1_61_H07.b1_A029 Root cold Pinus... 66 3e-009
gb|CX652851.1|CX652851 COLD1_61_H07.g1_A029 Root cold Pinus... 66 3e-009
gb|DR019998.1|DR019998 STRS1_34_A01.b1_A034 Shoot tip pitch... 66 3e-009
gb|DR020066.1|DR020066 STRS1_34_A01.g1_A034 Shoot tip pitch... 66 3e-009
gb|DR047742.1|DR047742 RTBOR1_3_E01.b1_A029 Roots plus adde... 66 3e-009
gb|DR053270.1|DR053270 RTCA1_10_B11.b1_A029 Roots minus cal... 66 3e-009
gb|DR053344.1|DR053344 RTCA1_10_B11.g1_A029 Roots minus cal... 66 3e-009
gb|DR057516.1|DR057516 RTNIT1_6_F07.b1_A029 Roots minus nit... 66 3e-009
gb|DR057604.1|DR057604 RTNIT1_6_F07.g1_A029 Roots minus nit... 66 3e-009
gb|DR178525.1|DR178525 RTMNUT1_12_G11.b1_A029 Roots minus m... 66 3e-009
gb|DR178613.1|DR178613 RTMNUT1_12_G11.g1_A029 Roots minus m... 66 3e-009
gb|DR683803.1|DR683803 EST1073879 Normalized pine embryo li... 66 3e-009
gb|DR688962.1|DR688962 EST1079048 Normalized pine embryo li... 66 3e-009
gb|DT635043.1|DT635043 EST1149974 Normalized pine embryo li... 66 3e-009
gb|DR047805.1|DR047805 RTBOR1_3_E01.g1_A029 Roots plus adde... 64 1e-008
gb|BX249833.1|BX249833 BX249833 Pinus pinaster differenciat... 60 2e-007
gb|CF394792.1|CF394792 RTDS2_7_F10.g1_A021 Drought-stressed... 60 2e-007
gb|DR683411.1|DR683411 EST1073487 Normalized pine embryo li... 60 2e-007
gb|DT631650.1|DT631650 EST1146581 Normalized pine embryo li... 60 2e-007
gb|BF777684.1|BF777684 NXSI_073_G02_F NXSI (Nsf Xylem Side ... 56 3e-006
gb|CO161486.1|CO161486 FLD1_29_D12.b1_A029 Root flooded Pin... 56 3e-006
gb|CO161559.1|CO161559 FLD1_29_D12.g1_A029 Root flooded Pin... 56 3e-006
gb|CO368334.1|CO368334 RTK1_40_B07.b1_A029 Roots minus pota... 56 3e-006
gb|BE123509.1|BE123509 NXNV_149_A09_F Nsf Xylem Normal wood... 54 1e-005
gb|CF478002.1|CF478002 RTWW3_17_D11.b1_A022 Well-watered lo... 52 5e-005
gb|CO157997.1|CO157997 FLD1_3_F02.g1_A029 Root flooded Pinu... 52 5e-005
gb|CX653063.1|CX653063 COLD1_63_E02.b1_A029 Root cold Pinus... 52 5e-005
gb|CX653144.1|CX653144 COLD1_63_E02.g1_A029 Root cold Pinus... 52 5e-005
gb|DR162039.1|DR162039 RTFE1_15_A01.g1_A029 Roots minus iro... 52 5e-005
gb|DR180801.1|DR180801 RTMNUT1_35_A02.b1_A029 Roots minus m... 52 5e-005
gb|DR746018.1|DR746018 RTCU1_34_D10.b1_A029 Roots plus adde... 52 5e-005
gb|DR119725.1|DR119725 RTMG1_25_C09.b1_A029 Roots minus mag... 50 2e-004
gb|DR120183.1|DR120183 RTMG1_28_C03.b1_A029 Roots minus mag... 50 2e-004
gb|DR161961.1|DR161961 RTFE1_15_A01.b1_A029 Roots minus iro... 50 2e-004
gb|DR746091.1|DR746091 RTCU1_34_D10.g1_A029 Roots plus adde... 50 2e-004
gb|AW064827.1|AW064827 ST36C06 Pine TriplEx shoot tip libra... 46 0.003
gb|CR394145.1|CR394145 CR394145 RN Pinus pinaster cDNA clon... 42 0.044
>gb|CO165913.1|CO165913 FLD1_58_C02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_C02_A029 3', mRNA sequence
Length = 859
Score = 75.8 bits (38), Expect = 3e-012
Identities = 427/554 (77%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 122 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 181
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 182 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 241
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 242 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 300
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 301 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 360
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 361 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 420
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|| ||||||| |||||||| ||||| || || ||||| ||||| || | | || |||
Sbjct: 421 acgaggtatataacagcatccaccttggcataataatctttccagaccctcctagcaatc 480
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
|||||||| || | || || || ||||||||||| || || || ||||| ||||| ||
Sbjct: 481 tggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcggat 540
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| || | ||| || ||||| |||||||| || ||||| || || | ||| || ||||
Sbjct: 541 gttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagcaag 600
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|| ||||| || |||||||| | |||||||| | ||||| |||||||||||||||| |
Sbjct: 601 gtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccacaag 660
Query: 810 ccgagggaggccag 823
|| |||| ||||||
Sbjct: 661 cctagggtggccag 674
>gb|DR161213.1|DR161213 RTFE1_10_B09.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_B09_A029 5', mRNA sequence
Length = 820
Score = 75.8 bits (38), Expect = 3e-012
Identities = 427/554 (77%), Gaps = 2/554 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 759 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 700
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 699 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 640
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 639 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 581
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 580 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 521
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 520 gtaagtagtgcatctagctccttccttgcttctgcaaaacgctctttatcagcagcatcc 461
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|| ||||||| |||||||| ||||| || || ||||| ||||| || | | || |||
Sbjct: 460 acgaggtatataacagcatccaccttggcataataatctttccagaccctcctagcaatc 401
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
|||||||| || | || || || ||||||||||| || || || ||||| ||||| ||
Sbjct: 400 tggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcggat 341
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| || | ||| || ||||| |||||||| || ||||| || || | ||| || ||||
Sbjct: 340 gttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagcaag 281
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|| ||||| || |||||||| | |||||||| | ||||| |||||||||||||||| |
Sbjct: 280 gtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccacaag 221
Query: 810 ccgagggaggccag 823
|| |||| ||||||
Sbjct: 220 cctagggtggccag 207
>gb|DR694280.1|DR694280 EST1084371 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEA37 3' end, mRNA sequence
Length = 881
Score = 75.8 bits (38), Expect = 3e-012
Identities = 427/554 (77%), Gaps = 2/554 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 773 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 714
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 713 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 654
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 653 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 595
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 594 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 535
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 534 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagtagcatcc 475
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|| ||||||| |||||||| ||||| || || ||||| ||||| || | | || |||
Sbjct: 474 acgaggtatataacagcatccaccttggcataataatctttccagaccctcctagcaatc 415
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
|||||||| || | || || || ||||||||||| || || || ||||| ||||| ||
Sbjct: 414 tggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcggat 355
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| || | ||| || ||||| |||||||| || ||||| || || | ||| || ||||
Sbjct: 354 gttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagcaag 295
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|| ||||| || |||||||| | |||||||| | ||||| |||||||||||||||| |
Sbjct: 294 gtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccacaag 235
Query: 810 ccgagggaggccag 823
|| |||| ||||||
Sbjct: 234 cctagggtggccag 221
>gb|DT638813.1|DT638813 EST1153744 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHJ75 3' end, mRNA sequence
Length = 850
Score = 75.8 bits (38), Expect = 3e-012
Identities = 427/554 (77%), Gaps = 2/554 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 781 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 722
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 721 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 662
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 661 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 603
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 602 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 543
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 542 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagtagcatcc 483
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|| ||||||| |||||||| ||||| || || ||||| ||||| || | | || |||
Sbjct: 482 acgaggtatataacagcatccaccttggcataataatctttccagaccctcctagcaatc 423
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
|||||||| || | || || || ||||||||||| || || || ||||| ||||| ||
Sbjct: 422 tggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcggat 363
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| || | ||| || ||||| |||||||| || ||||| || || | ||| || ||||
Sbjct: 362 gttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagcaag 303
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|| ||||| || |||||||| | |||||||| | ||||| |||||||||||||||| |
Sbjct: 302 gtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccacaag 243
Query: 810 ccgagggaggccag 823
|| |||| ||||||
Sbjct: 242 cctagggtggccag 229
>gb|CF478051.1|CF478051 RTWW3_17_D11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_D11_A022 5', mRNA sequence
Length = 730
Score = 73.8 bits (37), Expect = 1e-011
Identities = 292/377 (77%)
Strand = Plus / Minus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||
Sbjct: 559 gcataaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatca 500
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|| | || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||
Sbjct: 499 tctgtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagca 440
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| || ||||||| |||||||| ||||| || || ||||| ||||| || | | ||
Sbjct: 439 tccacgaggtatataacagcatccaccttggcataataatctttccagaccctcctagca 380
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||||||||| || | || || || ||||||||||| || || || ||||| |||||
Sbjct: 379 atctggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcg 320
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
|| || || | ||| || ||||| |||||||| || ||||| || || | ||| || |||
Sbjct: 319 gatgttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagc 260
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
| || ||||| || |||||||| | |||||||| | ||||| |||||||||||||||
Sbjct: 259 aaggtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccac 200
Query: 807 aggccgagggaggccag 823
| ||| |||| ||||||
Sbjct: 199 aagcctagggtggccag 183
Score = 40.1 bits (20), Expect = 0.17
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 276 ttgatgtactgggagacccacttgaaaccatcaccgtagcccat 319
|||||||||||||| | |||||||| ||| ||||| || |||||
Sbjct: 730 ttgatgtactgggacagccacttgataccttcaccatatcccat 687
>gb|CO167745.1|CO167745 FLD1_70_H06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_H06_A029 5', mRNA sequence
Length = 718
Score = 73.8 bits (37), Expect = 1e-011
Identities = 292/377 (77%)
Strand = Plus / Minus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||
Sbjct: 553 gcataaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatca 494
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|| | || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||
Sbjct: 493 tctgtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagca 434
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| || ||||||| |||||||| ||||| || || ||||| ||||| || | | ||
Sbjct: 433 tccacgaggtatataacagcatccaccttggcataataatctttccagaccctcctagca 374
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||||||||| || | || || || ||||||||||| || || || ||||| |||||
Sbjct: 373 atctggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcg 314
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
|| || || | ||| || ||||| |||||||| || ||||| || || | ||| || |||
Sbjct: 313 gatgttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagc 254
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
| || ||||| || |||||||| | |||||||| | ||||| |||||||||||||||
Sbjct: 253 aaggtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccac 194
Query: 807 aggccgagggaggccag 823
| ||| |||| ||||||
Sbjct: 193 aagcctagggtggccag 177
>gb|DR080245.1|DR080245 RTFEPL1_21_H01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_H01_A029 3', mRNA sequence
Length = 801
Score = 73.8 bits (37), Expect = 1e-011
Identities = 292/377 (77%)
Strand = Plus / Plus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||
Sbjct: 229 gcataaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatca 288
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|| | || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||
Sbjct: 289 tctgtaagtagtgcatctagctccttccttgcttctgcaaaacgctctttatcagcagca 348
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| || ||||||| |||||||| ||||| || || ||||| ||||| || | | ||
Sbjct: 349 tccacgaggtatataacagcatccaccttggcataataatctttccagaccctcctagca 408
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||||||||| || | || || || ||||||||||| || || || ||||| |||||
Sbjct: 409 atctggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcg 468
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
|| || || | ||| || ||||| |||||||| || ||||| || || | ||| || |||
Sbjct: 469 gatgttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagc 528
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
| || ||||| || |||||||| | |||||||| | ||||| |||||||||||||||
Sbjct: 529 aaggtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccac 588
Query: 807 aggccgagggaggccag 823
| ||| |||| ||||||
Sbjct: 589 aagcctagggtggccag 605
>gb|DR119795.1|DR119795 RTMG1_25_C09.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_C09_A029 5', mRNA sequence
Length = 749
Score = 73.8 bits (37), Expect = 1e-011
Identities = 292/377 (77%)
Strand = Plus / Minus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||
Sbjct: 656 gcataaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatca 597
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|| | || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||
Sbjct: 596 tctgtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagca 537
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| || ||||||| |||||||| ||||| || || ||||| ||||| || | | ||
Sbjct: 536 tccacgaggtatataacagcatccaccttggcataataatctttccagaccctcctagca 477
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||||||||| || | || || || ||||||||||| || || || ||||| |||||
Sbjct: 476 atctggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcg 417
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
|| || || | ||| || ||||| |||||||| || ||||| || || | ||| || |||
Sbjct: 416 gatgttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagc 357
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
| || ||||| || |||||||| | |||||||| | ||||| |||||||||||||||
Sbjct: 356 aaggtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccac 297
Query: 807 aggccgagggaggccag 823
| ||| |||| ||||||
Sbjct: 296 aagcctagggtggccag 280
>gb|DR120259.1|DR120259 RTMG1_28_C03.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_28_C03_A029 5', mRNA sequence
Length = 665
Score = 73.8 bits (37), Expect = 1e-011
Identities = 292/377 (77%)
Strand = Plus / Minus
Query: 447 gcatatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatca 506
||||| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||
Sbjct: 553 gcataaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatca 494
Query: 507 tcagacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgca 566
|| | || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||
Sbjct: 493 tctgtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagca 434
Query: 567 tctaccaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcg 626
|| || ||||||| |||||||| ||||| || || ||||| ||||| || | | ||
Sbjct: 433 tccacgaggtatataacagcatccaccttggcataataatctttccagaccctcctagca 374
Query: 627 atctggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctcc 686
||||||||||| || | || || || ||||||||||| || || || ||||| |||||
Sbjct: 373 atctggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcg 314
Query: 687 gacgtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagc 746
|| || || | ||| || ||||| |||||||| || ||||| || || | ||| || |||
Sbjct: 313 gatgttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagc 254
Query: 747 agcgtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccac 806
| || ||||| || |||||||| | |||||||| | ||||| |||||||||||||||
Sbjct: 253 aaggtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccac 194
Query: 807 aggccgagggaggccag 823
| ||| |||| ||||||
Sbjct: 193 aagcctagggtggccag 177
>gb|DR080318.1|DR080318 RTFEPL1_21_H01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_H01_A029 5', mRNA sequence
Length = 786
Score = 69.9 bits (35), Expect = 2e-010
Identities = 421/547 (76%), Gaps = 2/547 (0%)
Strand = Plus / Plus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 240 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 299
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 300 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 359
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 360 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 418
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 419 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 478
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 479 gtaagtagtgcatctagctccttccttgcttctgcaaaacgctctttatcagcagcatcc 538
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|| ||||||| |||||||| ||||| || || ||||| ||||| || | | || |||
Sbjct: 539 acgaggtatataacagcatccaccttggcataataatctttccagaccctcctagcaatc 598
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
|||||||| || | || || || ||||||||||| || || || ||||| ||||| ||
Sbjct: 599 tggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcggat 658
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| || | ||| || ||||| |||||||| || ||||| || || | ||| || ||||
Sbjct: 659 gttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagcaag 718
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|| ||||| || |||||||| | |||||||| | ||||| |||||||||||||||| |
Sbjct: 719 gtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccacaag 778
Query: 810 ccgaggg 816
|| ||||
Sbjct: 779 cctaggg 785
>gb|DR161131.1|DR161131 RTFE1_10_B09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_B09_A029 3', mRNA sequence
Length = 816
Score = 69.9 bits (35), Expect = 2e-010
Identities = 426/554 (76%), Gaps = 2/554 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 587 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 528
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 527 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 468
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 467 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 409
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 408 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 349
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 348 gtaagtagtgcatctagctccttccttgcttctgcaaaacgctctttatcagcagcatcc 289
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|| ||||||| |||||||| ||||| || || ||||| ||||| || | | || |||
Sbjct: 288 acgaggtatataacagcatccaccttggcataataatctttccagaccctcctagcaatc 229
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
|||||||| || | || || || ||||||||||| || || || ||||| ||||| ||
Sbjct: 228 tggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcggat 169
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| || | ||| || ||||| |||||||| || ||||| || || | ||| || ||||
Sbjct: 168 gttggatactgtgttggctgatgctgcactaatcgctcatcttttaacatatgaagcaag 109
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|| ||||| || |||||||| | |||||||| | ||||| |||||||||||||||| |
Sbjct: 108 gtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccacaag 49
Query: 810 ccgagggaggccag 823
|| | || ||||||
Sbjct: 48 cctanggtggccag 35
>gb|CO368414.1|CO368414 RTK1_40_B07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_B07_A029 5', mRNA sequence
Length = 851
Score = 67.9 bits (34), Expect = 8e-010
Identities = 427/554 (77%), Gaps = 3/554 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 760 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 701
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 700 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 641
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 640 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 582
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 581 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 522
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 521 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 462
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttccacacgcggcgcgcgatc 629
|| ||||||| |||||||| ||||| || || ||||| ||||| || | | || |||
Sbjct: 461 acgaggtatataacagcatccaccttggcataataatctttccagaccctcctagcaatc 402
Query: 630 tggtggccgccgaggtcgaacgccttgaacttgatcttgccgatgctgagctcctccgac 689
|||||||| || | || || || ||||||||||| || || || ||||| ||||| ||
Sbjct: 401 tggtggccacccaaatcaaaagctttgaacttgattttcccaatactgagttcctcggat 342
Query: 690 gtcgggtgctgcgtcggctggtgctgcaccaaccgctcgtccttgagcatgtggagcagc 749
|| || | ||| || ||||| ||||||| ||| ||||| || || | ||| || ||||
Sbjct: 341 gttggatactgtgttggctgatgctgca-caatcgctcatcttttaacatatgaagcaag 283
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
|| ||||| || |||||||| | |||||||| | ||||| |||||||||||||||| |
Sbjct: 282 gtagtcttccctgcgttgtctaaaccaaggaacaatatcttcgcctccttctgccacaag 223
Query: 810 ccgagggaggccag 823
|| |||| ||||||
Sbjct: 222 cctagggtggccag 209
>gb|CF392716.1|CF392716 RTDR3_5_C08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_C08_A022 5', mRNA
sequence
Length = 724
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 622 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 563
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 562 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 503
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 502 ttttttgcctccgcaaatctctctttatc 474
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 283 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 224
Query: 810 cc 811
||
Sbjct: 223 cc 222
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 332 actgcacatgaagacctcaa 351
||||||||||||||||||||
Sbjct: 701 actgcacatgaagacctcaa 682
>gb|CF394711.1|CF394711 RTDS2_7_F10.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_F10_A021 3', mRNA sequence
Length = 763
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 492 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 433
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 432 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 373
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 372 ttttttgcctccgcaaatctctctttatc 344
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 153 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 94
Query: 810 cc 811
||
Sbjct: 93 cc 92
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 624 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 565
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 564 atgaagacctcaa 552
>gb|CF395475.1|CF395475 RTDS2_11_F03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_F03_A021 5', mRNA sequence
Length = 708
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 617 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 558
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 557 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 498
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 497 ttttttgcctctgcaaatctctctttatc 469
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 278 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 219
Query: 810 cc 811
||
Sbjct: 218 cc 217
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 332 actgcacatgaagacctcaa 351
||||||||||||||||||||
Sbjct: 696 actgcacatgaagacctcaa 677
>gb|CF476981.1|CF476981 RTWW3_5_F05.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_F05_A022 3', mRNA sequence
Length = 757
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 226 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 167
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 166 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 107
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 106 ttttttgcctccgcaaatctctctttatc 78
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 358 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 299
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 298 atgaagacctcaa 286
>gb|CF477106.1|CF477106 RTWW3_5_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_F05_A022 5', mRNA sequence
Length = 729
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 594 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 535
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 534 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 475
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 474 ttttttgcctccgcaaatctctctttatc 446
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 255 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 196
Query: 810 cc 811
||
Sbjct: 195 cc 194
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 726 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 667
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 666 atgaagacctcaa 654
>gb|CX647889.1|CX647889 COLD1_25_D11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_D11_A029 3', mRNA sequence
Length = 799
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 394 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 335
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 334 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 275
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 274 ttttttgcctccgcaaatctctctttatc 246
Score = 46.1 bits (23), Expect = 0.003
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgcc 804
||||||||||| || || || |||||||| || || ||||||||||| |||||||
Sbjct: 55 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgcc 1
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 526 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 467
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 466 atgaagacctcaa 454
>gb|CX652773.1|CX652773 COLD1_61_H07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_H07_A029 3', mRNA sequence
Length = 638
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 233 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 174
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 173 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 114
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 113 ttttttgcctccgcaaatctctctttatc 85
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 365 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 306
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 305 atgaagacctcaa 293
>gb|CX652851.1|CX652851 COLD1_61_H07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_H07_A029 5', mRNA sequence
Length = 776
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 653 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 594
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 593 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 534
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 533 ttttttgcctccgcaaatctctctttatc 505
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 314 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 255
Query: 810 cc 811
||
Sbjct: 254 cc 253
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 332 actgcacatgaagacctcaa 351
||||||||||||||||||||
Sbjct: 732 actgcacatgaagacctcaa 713
>gb|DR019998.1|DR019998 STRS1_34_A01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_A01_A034 3', mRNA sequence
Length = 798
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 100 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 159
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 160 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 219
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 220 ttttttgcctccgcaaatctctctttatc 248
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 439 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 498
Query: 810 cc 811
||
Sbjct: 499 cc 500
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 332 actgcacatgaagacctcaa 351
||||||||||||||||||||
Sbjct: 21 actgcacatgaagacctcaa 40
>gb|DR020066.1|DR020066 STRS1_34_A01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_A01_A034 5', mRNA sequence
Length = 798
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 316 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 375
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 376 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 435
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 436 ttttttgcctccgcaaatctctctttatc 464
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 655 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 714
Query: 810 cc 811
||
Sbjct: 715 cc 716
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 184 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 243
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 244 atgaagacctcaa 256
>gb|DR047742.1|DR047742 RTBOR1_3_E01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_E01_A029 3', mRNA sequence
Length = 665
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 259 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 200
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 199 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 140
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 139 ttttttgcctccgcaaatctctctttatc 111
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 391 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 332
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 331 atgaagacctcaa 319
>gb|DR053270.1|DR053270 RTCA1_10_B11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_10_B11_A029 3', mRNA sequence
Length = 745
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 229 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 170
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 169 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 110
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 109 ttttttgcctccgcaaatctctctttatc 81
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 361 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 302
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 301 atgaagacctcaa 289
>gb|DR053344.1|DR053344 RTCA1_10_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_10_B11_A029 5', mRNA sequence
Length = 672
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 649 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 590
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 589 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 530
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 529 ttttttgcctccgcaaatctctctttatc 501
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 310 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 251
Query: 810 cc 811
||
Sbjct: 250 cc 249
>gb|DR057516.1|DR057516 RTNIT1_6_F07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_F07_A029 3', mRNA sequence
Length = 857
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 420 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 361
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 360 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 301
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 300 ttttttgcctccgcaaatctctctttatc 272
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 81 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 22
Query: 810 cc 811
||
Sbjct: 21 cc 20
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 552 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 493
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 492 atgaagacctcaa 480
>gb|DR057604.1|DR057604 RTNIT1_6_F07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_F07_A029 5', mRNA sequence
Length = 903
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 635 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 576
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 575 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 516
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 515 ttttttgcctccgcaaatctctctttatc 487
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 296 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 237
Query: 810 cc 811
||
Sbjct: 236 cc 235
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 767 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 708
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 707 atgaagacctcaa 695
>gb|DR178525.1|DR178525 RTMNUT1_12_G11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_G11_A029 3', mRNA sequence
Length = 757
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 236 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 177
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 176 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 117
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 116 ttttttgcctccgcaaatctctctttatc 88
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 368 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 309
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 308 atgaagacctcaa 296
>gb|DR178613.1|DR178613 RTMNUT1_12_G11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_G11_A029 5', mRNA sequence
Length = 744
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 434 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 375
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 374 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 315
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 314 ttttttgcctccgcaaatctctctttatc 286
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 95 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 36
Query: 810 cc 811
||
Sbjct: 35 cc 34
Score = 42.1 bits (21), Expect = 0.044
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 279 atgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgcac 338
|||||||| |||| ||| || | ||| ||||| || ||||| || | ||| | |||||||
Sbjct: 566 atgtactgagagagccatttaataccttcaccataacccattttcctaacgatactgcac 507
Query: 339 atgaagacctcaa 351
|||||||||||||
Sbjct: 506 atgaagacctcaa 494
>gb|DR683803.1|DR683803 EST1073879 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL47 3' end, mRNA sequence
Length = 663
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 565 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 506
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 505 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 446
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 445 ttttttgcctccgcaaatctctctttatc 417
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 226 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 167
Query: 810 cc 811
||
Sbjct: 166 cc 165
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 332 actgcacatgaagacctcaa 351
||||||||||||||||||||
Sbjct: 644 actgcacatgaagacctcaa 625
>gb|DR688962.1|DR688962 EST1079048 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC61 3' end, mRNA sequence
Length = 776
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 677 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 618
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 617 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 558
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 557 ttttttgcctccgcaaatctctctttatc 529
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||| ||||||| ||||||||||||
Sbjct: 338 gtggtcttgcctgcattatctaggccaagaaatagaatcctggcctctttctgccacagg 279
Query: 810 cc 811
||
Sbjct: 278 cc 277
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 332 actgcacatgaagacctcaa 351
||||||||||||||||||||
Sbjct: 756 actgcacatgaagacctcaa 737
>gb|DT635043.1|DT635043 EST1149974 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGC55 3' end, mRNA sequence
Length = 785
Score = 65.9 bits (33), Expect = 3e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 411 aggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttg 470
|||||||||| ||| || ||||| |||||||| || |||||||| ||||||||||||||
Sbjct: 685 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 626
Query: 471 ccaaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcc 530
|| | || | || || ||||| | |||||||||||| || || | ||||||||||||
Sbjct: 625 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 566
Query: 531 ttctttgattcagcaaatcgctccttatc 559
|| |||| || ||||||| ||| |||||
Sbjct: 565 ttttttgcctccgcaaatctctctttatc 537
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||| ||||||| ||||||||||||
Sbjct: 346 gtggtcttgcctgcattatctaggccaagaaatagaatcctggcctctttctgccacagg 287
Query: 810 cc 811
||
Sbjct: 286 cc 285
>gb|DR047805.1|DR047805 RTBOR1_3_E01.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_E01_A029 5', mRNA sequence
Length = 632
Score = 63.9 bits (32), Expect = 1e-008
Identities = 119/148 (80%)
Strand = Plus / Minus
Query: 412 ggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgc 471
||||||||| ||| || ||||| |||||||| || |||||||| |||||||||||||| |
Sbjct: 632 ggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgtttc 573
Query: 472 caaggatgagaaatggaacattggccaaagaatcatcagacaggagagcatcgagctcct 531
| | || | || || ||||| | |||||||||||| || || | |||||||||||||
Sbjct: 572 ctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcct 513
Query: 532 tctttgattcagcaaatcgctccttatc 559
| |||| || ||||||| ||| |||||
Sbjct: 512 tatttgcctccgcaaatctctctttatc 485
Score = 58.0 bits (29), Expect = 7e-007
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 294 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 235
Query: 810 c 810
|
Sbjct: 234 c 234
>gb|BX249833.1|BX249833 BX249833 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP029C02, mRNA sequence
Length = 680
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 472 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 413
Query: 810 cc 811
||
Sbjct: 412 cc 411
>gb|CF394792.1|CF394792 RTDS2_7_F10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_F10_A021 5', mRNA sequence
Length = 734
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 460 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 401
Query: 810 cc 811
||
Sbjct: 400 cc 399
>gb|DR683411.1|DR683411 EST1073487 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG84 3' end, mRNA sequence
Length = 609
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 226 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 167
Query: 810 cc 811
||
Sbjct: 166 cc 165
>gb|DT631650.1|DT631650 EST1146581 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFB15 3' end, mRNA sequence
Length = 749
Score = 60.0 bits (30), Expect = 2e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 750 gtggtcttgccggcgttgtcgaggccaaggaagaggatcttggcctccttctgccacagg 809
||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||
Sbjct: 350 gtggtcttgcctgcattatctaggccaagaaatagaatcttggcctctttctgccacagg 291
Query: 810 cc 811
||
Sbjct: 290 cc 289
>gb|BF777684.1|BF777684 NXSI_073_G02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_073_G02 5' similar to Arabidopsis thaliana
sequence At4g02080 SAR1/GTP-binding secretory factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 507
Score = 56.0 bits (28), Expect = 3e-006
Identities = 267/344 (77%), Gaps = 2/344 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 379 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 320
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 319 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 260
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 259 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 201
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 200 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 141
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 140 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 81
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttcca 613
|| ||||||| |||||||| ||||| || || ||||| |||||
Sbjct: 80 acgaggtatataacagcatccaccttggcataataatctttcca 37
>gb|CO161486.1|CO161486 FLD1_29_D12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_D12_A029 3', mRNA sequence
Length = 850
Score = 56.0 bits (28), Expect = 3e-006
Identities = 267/344 (77%), Gaps = 2/344 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 474 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 415
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 414 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 355
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 354 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 296
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 295 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 236
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 235 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 176
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttcca 613
|| ||||||| |||||||| ||||| || || ||||| |||||
Sbjct: 175 acgaggtatataacagcatccaccttggcataataatctttcca 132
>gb|CO161559.1|CO161559 FLD1_29_D12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_D12_A029 5', mRNA sequence
Length = 817
Score = 56.0 bits (28), Expect = 3e-006
Identities = 267/344 (77%), Gaps = 2/344 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 559 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 500
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 499 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 440
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 439 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 381
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 380 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 321
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 320 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 261
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttcca 613
|| ||||||| |||||||| ||||| || || ||||| |||||
Sbjct: 260 acgaggtatataacagcatccaccttggcataataatctttcca 217
>gb|CO368334.1|CO368334 RTK1_40_B07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_B07_A029 3', mRNA sequence
Length = 817
Score = 56.0 bits (28), Expect = 3e-006
Identities = 267/344 (77%), Gaps = 2/344 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 484 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 425
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 424 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 365
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 364 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 306
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 305 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 246
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 245 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 186
Query: 570 accaggtatactacagcatcaacctttgcgtagtaatccttcca 613
|| ||||||| |||||||| ||||| || || ||||| |||||
Sbjct: 185 acgaggtatataacagcatccaccttggcataataatctttcca 142
>gb|BE123509.1|BE123509 NXNV_149_A09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_149_A09 5' similar to Arabidopsis thaliana
sequence At4g02080 SAR1/GTP-binding secretory factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 277
Score = 54.0 bits (27), Expect = 1e-005
Identities = 105/131 (80%)
Strand = Plus / Minus
Query: 429 agctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgagaaatgga 488
||||| |||||||| || |||||||| |||||||||||||| || | || | || ||
Sbjct: 240 agctcatcttcagatgctgcatatggaatatcaatcttgtttcctaaaatcaagaaaggc 181
Query: 489 acattggccaaagaatcatcagacaggagagcatcgagctccttctttgattcagcaaat 548
||||| | |||||||||||| || || | |||||||||||||| |||| || ||||||
Sbjct: 180 acatttgtcaaagaatcatctgaaagtaaggcatcgagctccttttttgcctccgcaaat 121
Query: 549 cgctccttatc 559
| ||| |||||
Sbjct: 120 ctctctttatc 110
>gb|CF478002.1|CF478002 RTWW3_17_D11.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_D11_A022 3', mRNA sequence
Length = 597
Score = 52.0 bits (26), Expect = 5e-005
Identities = 253/326 (77%), Gaps = 2/326 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 341 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 282
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 281 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 222
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 221 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 163
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 162 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 103
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 102 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 43
Query: 570 accaggtatactacagcatcaacctt 595
|| ||||||| |||||||| |||||
Sbjct: 42 acgaggtatataacagcatccacctt 17
>gb|CO157997.1|CO157997 FLD1_3_F02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_3_F02_A029 5', mRNA sequence
Length = 726
Score = 52.0 bits (26), Expect = 5e-005
Identities = 262/338 (77%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 277 tgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaacactgc 336
||||||||||||| | |||||||| ||| ||||| || ||||| || || || | |||||
Sbjct: 349 tgatgtactgggacagccacttgataccttcaccatatcccatttttcggacgatactgc 408
Query: 337 acatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgcccttcccgg 396
|||| || ||||||| || || ||||| || ||| | |||||||| ||||| || |
Sbjct: 409 acataaacacctcaataggtcgtacattagaatcggacaaattgaccttacccttaccag 468
Query: 397 ttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatggg 455
| ||| || |||| |||||| |||| ||| || || || || || || || ||||| ||
Sbjct: 469 tggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgcataaggt 527
Query: 456 atatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatcagacagg 515
||||| || ||||| || ||||| ||||| || ||||| | ||| |||||||| | ||
Sbjct: 528 atatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatctgtaagt 587
Query: 516 agagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatctaccagg 575
|| ||||| ||||||||| ||| ||| ||||| ||||| |||||| ||||| || |||
Sbjct: 588 agtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatccacgagg 647
Query: 576 tatactacagcatcaacctttgcgtagtaatccttcca 613
|||| |||||||| ||||| || || ||||| |||||
Sbjct: 648 tatataacagcatccaccttggcataataatctttcca 685
>gb|CX653063.1|CX653063 COLD1_63_E02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_E02_A029 3', mRNA sequence
Length = 658
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 729 tccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatc 788
|||||||||||||| || || || ||||| || || ||||||||||| ||||| ||||||
Sbjct: 179 tccttgagcatgtgaagaagggtagtctttcctgcattgtcgaggcccaggaaaaggatc 120
Query: 789 tt 790
||
Sbjct: 119 tt 118
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 597 gcgtagtaatccttccacac 616
||||||||||||||||||||
Sbjct: 311 gcgtagtaatccttccacac 292
>gb|CX653144.1|CX653144 COLD1_63_E02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_E02_A029 5', mRNA sequence
Length = 663
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 729 tccttgagcatgtggagcagcgtggtcttgccggcgttgtcgaggccaaggaagaggatc 788
|||||||||||||| || || || ||||| || || ||||||||||| ||||| ||||||
Sbjct: 160 tccttgagcatgtgaagaagggtagtctttcctgcattgtcgaggcccaggaaaaggatc 101
Query: 789 tt 790
||
Sbjct: 100 tt 99
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 597 gcgtagtaatccttccacac 616
||||||||||||||||||||
Sbjct: 292 gcgtagtaatccttccacac 273
>gb|DR162039.1|DR162039 RTFE1_15_A01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_15_A01_A029 5', mRNA sequence
Length = 436
Score = 52.0 bits (26), Expect = 5e-005
Identities = 134/170 (78%)
Strand = Plus / Minus
Query: 654 ttgaacttgatcttgccgatgctgagctcctccgacgtcgggtgctgcgtcggctggtgc 713
||||||||||| || || || ||||| ||||| || || || | ||| || ||||| |||
Sbjct: 327 ttgaacttgattttcccaatactgagttcctcggatgttggatactgtgttggctgatgc 268
Query: 714 tgcaccaaccgctcgtccttgagcatgtggagcagcgtggtcttgccggcgttgtcgagg 773
||||| || ||||| || || | ||| || |||| || ||||| || |||||||| |
Sbjct: 267 tgcactaatcgctcatcttttaacatatgaagcaaggtagtcttccctgcgttgtctaaa 208
Query: 774 ccaaggaagaggatcttggcctccttctgccacaggccgagggaggccag 823
|||||||| | ||||| |||||||||||||||| ||| |||| ||||||
Sbjct: 207 ccaaggaacaatatcttcgcctccttctgccacaagcctagggtggccag 158
>gb|DR180801.1|DR180801 RTMNUT1_35_A02.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_A02_A029 3', mRNA sequence
Length = 687
Score = 52.0 bits (26), Expect = 5e-005
Identities = 253/326 (77%), Gaps = 2/326 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 328 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 269
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 268 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 209
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 208 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 150
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 149 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 90
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 89 gtaagtagtgcatctagctccttccttgcttctgcaaaacgctctttatcagcagcatcc 30
Query: 570 accaggtatactacagcatcaacctt 595
|| ||||||| |||||||| |||||
Sbjct: 29 acgaggtatataacagcatccacctt 4
>gb|DR746018.1|DR746018 RTCU1_34_D10.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_34_D10_A029 3', mRNA sequence
Length = 687
Score = 52.0 bits (26), Expect = 5e-005
Identities = 253/326 (77%), Gaps = 2/326 (0%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 328 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 269
Query: 331 cactgcacatgaagacctcaagtggacggacattggagtcgccaaggttgaccttgccct 390
||||||||| || ||||||| || || ||||| || ||| | |||||||| ||||
Sbjct: 268 tactgcacataaacacctcaataggtcgtacattagaatcggacaaattgaccttaccct 209
Query: 391 tcccggttgtg-aagttgctaaggcctaggtgataccgtagctcctcttcagaggcagca 449
| || || ||| || |||| |||||| |||| ||| || || || || || || || |||
Sbjct: 208 taccagtggtgtaatttgc-aaggcccaggtaataacgaagttcttcctctgatgctgca 150
Query: 450 tatgggatatcaatcttgttgccaaggatgagaaatggaacattggccaaagaatcatca 509
|| || ||||| || ||||| || ||||| ||||| || ||||| | ||| ||||||||
Sbjct: 149 taaggtatatctattttgtttcctaggatcagaaaaggtacattcgtcaatgaatcatct 90
Query: 510 gacaggagagcatcgagctccttctttgattcagcaaatcgctccttatcatatgcatct 569
| || || ||||| ||||||||| ||| ||| ||||| ||||| |||||| |||||
Sbjct: 89 gtaagtagtgcatctagctccttccttgcttctgcaaagcgctctttatcagcagcatcc 30
Query: 570 accaggtatactacagcatcaacctt 595
|| ||||||| |||||||| |||||
Sbjct: 29 acgaggtatataacagcatccacctt 4
>gb|DR119725.1|DR119725 RTMG1_25_C09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_C09_A029 3', mRNA sequence
Length = 676
Score = 50.1 bits (25), Expect = 2e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 271 cctacttgatgtactgggagacccacttgaaaccatcaccgtagcccatcttgcgaacaa 330
|||| |||||||||||||| | |||||||| ||| ||||| || ||||| || || || |
Sbjct: 318 cctatttgatgtactgggacagccacttgataccttcaccatatcccatttttcggacga 259
Query: 331 cactgcacatgaagacctcaa 351
||||||||| || |||||||
Sbjct: 258 tactgcacataaacacctcaa 238
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,200
Number of Sequences: 355925
Number of extensions: 126200
Number of successful extensions: 34221
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34085
Number of HSP's gapped (non-prelim): 135
length of query: 1019
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1000
effective length of database: 210,514,662
effective search space: 210514662000
effective search space used: 210514662000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)