BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.1
(643 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF392716.1|CF392716 RTDR3_5_C08.g1_A022 Loblolly pine ro... 68 5e-010
gb|CF394711.1|CF394711 RTDS2_7_F10.b1_A021 Drought-stressed... 68 5e-010
gb|CF395475.1|CF395475 RTDS2_11_F03.g1_A021 Drought-stresse... 68 5e-010
gb|CF476981.1|CF476981 RTWW3_5_F05.b1_A022 Well-watered lob... 68 5e-010
gb|CF477106.1|CF477106 RTWW3_5_F05.g1_A022 Well-watered lob... 68 5e-010
gb|CX647889.1|CX647889 COLD1_25_D11.b1_A029 Root cold Pinus... 68 5e-010
gb|CX652773.1|CX652773 COLD1_61_H07.b1_A029 Root cold Pinus... 68 5e-010
gb|CX652851.1|CX652851 COLD1_61_H07.g1_A029 Root cold Pinus... 68 5e-010
gb|DR019998.1|DR019998 STRS1_34_A01.b1_A034 Shoot tip pitch... 68 5e-010
gb|DR020066.1|DR020066 STRS1_34_A01.g1_A034 Shoot tip pitch... 68 5e-010
gb|DR047742.1|DR047742 RTBOR1_3_E01.b1_A029 Roots plus adde... 68 5e-010
gb|DR053270.1|DR053270 RTCA1_10_B11.b1_A029 Roots minus cal... 68 5e-010
gb|DR053344.1|DR053344 RTCA1_10_B11.g1_A029 Roots minus cal... 68 5e-010
gb|DR057516.1|DR057516 RTNIT1_6_F07.b1_A029 Roots minus nit... 68 5e-010
gb|DR057604.1|DR057604 RTNIT1_6_F07.g1_A029 Roots minus nit... 68 5e-010
gb|DR178525.1|DR178525 RTMNUT1_12_G11.b1_A029 Roots minus m... 68 5e-010
gb|DR178613.1|DR178613 RTMNUT1_12_G11.g1_A029 Roots minus m... 68 5e-010
gb|DR683803.1|DR683803 EST1073879 Normalized pine embryo li... 68 5e-010
gb|DR688962.1|DR688962 EST1079048 Normalized pine embryo li... 68 5e-010
gb|DT635043.1|DT635043 EST1149974 Normalized pine embryo li... 68 5e-010
gb|DR047805.1|DR047805 RTBOR1_3_E01.g1_A029 Roots plus adde... 60 1e-007
gb|DR683411.1|DR683411 EST1073487 Normalized pine embryo li... 60 1e-007
gb|DT631650.1|DT631650 EST1146581 Normalized pine embryo li... 60 1e-007
gb|BE123509.1|BE123509 NXNV_149_A09_F Nsf Xylem Normal wood... 56 2e-006
gb|CF394792.1|CF394792 RTDS2_7_F10.g1_A021 Drought-stressed... 40 0.11
>gb|CF392716.1|CF392716 RTDR3_5_C08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_C08_A022 5', mRNA
sequence
Length = 724
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 622 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 563
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 562 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 503
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 502 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 443
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 442 accttggcataataatctttccagac 417
>gb|CF394711.1|CF394711 RTDS2_7_F10.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_F10_A021 3', mRNA sequence
Length = 763
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 492 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 433
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 432 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 373
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 372 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 313
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 312 accttggcataataatctttccagac 287
>gb|CF395475.1|CF395475 RTDS2_11_F03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_F03_A021 5', mRNA sequence
Length = 708
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 617 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 558
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 557 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 498
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 497 ttttttgcctctgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 438
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 437 accttggcataataatctttccagac 412
>gb|CF476981.1|CF476981 RTWW3_5_F05.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_F05_A022 3', mRNA sequence
Length = 757
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 226 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 167
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 166 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 107
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 106 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 47
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 46 accttggcataataatctttccagac 21
>gb|CF477106.1|CF477106 RTWW3_5_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_F05_A022 5', mRNA sequence
Length = 729
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 594 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 535
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 534 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 475
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 474 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 415
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 414 accttggcataataatctttccagac 389
>gb|CX647889.1|CX647889 COLD1_25_D11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_D11_A029 3', mRNA sequence
Length = 799
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 394 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 335
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 334 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 275
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 274 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 215
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 214 accttggcataataatctttccagac 189
>gb|CX652773.1|CX652773 COLD1_61_H07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_H07_A029 3', mRNA sequence
Length = 638
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 233 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 174
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 173 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 114
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 113 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 54
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 53 accttggcataataatctttccagac 28
>gb|CX652851.1|CX652851 COLD1_61_H07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_61_H07_A029 5', mRNA sequence
Length = 776
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 653 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 594
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 593 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 534
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 533 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 474
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 473 accttggcataataatctttccagac 448
>gb|DR019998.1|DR019998 STRS1_34_A01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_A01_A034 3', mRNA sequence
Length = 798
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Plus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 100 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 159
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 160 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 219
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 220 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 279
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 280 accttggcataataatctttccagac 305
>gb|DR020066.1|DR020066 STRS1_34_A01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_A01_A034 5', mRNA sequence
Length = 798
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Plus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 316 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 375
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 376 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 435
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 436 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 495
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 496 accttggcataataatctttccagac 521
>gb|DR047742.1|DR047742 RTBOR1_3_E01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_E01_A029 3', mRNA sequence
Length = 665
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 259 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 200
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 199 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 140
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 139 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 80
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 79 accttggcataataatctttccagac 54
>gb|DR053270.1|DR053270 RTCA1_10_B11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_10_B11_A029 3', mRNA sequence
Length = 745
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 229 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 170
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 169 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 110
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 109 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 50
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 49 accttggcataataatctttccagac 24
>gb|DR053344.1|DR053344 RTCA1_10_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_10_B11_A029 5', mRNA sequence
Length = 672
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 649 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 590
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 589 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 530
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 529 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 470
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 469 accttggcataataatctttccagac 444
>gb|DR057516.1|DR057516 RTNIT1_6_F07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_F07_A029 3', mRNA sequence
Length = 857
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 420 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 361
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 360 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 301
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 300 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 241
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 240 accttggcataataatctttccagac 215
>gb|DR057604.1|DR057604 RTNIT1_6_F07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_6_F07_A029 5', mRNA sequence
Length = 903
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 635 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 576
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 575 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 516
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 515 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 456
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 455 accttggcataataatctttccagac 430
>gb|DR178525.1|DR178525 RTMNUT1_12_G11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_G11_A029 3', mRNA sequence
Length = 757
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 236 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 177
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 176 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 117
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 116 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 57
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 56 accttggcataataatctttccagac 31
>gb|DR178613.1|DR178613 RTMNUT1_12_G11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_G11_A029 5', mRNA sequence
Length = 744
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 434 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 375
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 374 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 315
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 314 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 255
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 254 accttggcataataatctttccagac 229
>gb|DR683803.1|DR683803 EST1073879 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL47 3' end, mRNA sequence
Length = 663
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 565 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 506
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 505 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 446
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 445 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 386
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 385 accttggcataataatctttccagac 360
>gb|DR688962.1|DR688962 EST1079048 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACC61 3' end, mRNA sequence
Length = 776
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 677 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 618
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 617 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 558
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 557 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 498
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 497 accttggcataataatctttccagac 472
>gb|DT635043.1|DT635043 EST1149974 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGC55 3' end, mRNA sequence
Length = 785
Score = 67.9 bits (34), Expect = 5e-010
Identities = 163/206 (79%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 685 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgttt 626
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 625 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 566
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 565 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 506
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 505 accttggcataataatctttccagac 480
>gb|DR047805.1|DR047805 RTBOR1_3_E01.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_E01_A029 5', mRNA sequence
Length = 632
Score = 60.0 bits (30), Expect = 1e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 436 ggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgtt 493
||||||||| ||| |||||||| |||||||| || ||||| || ||||||||||||||
Sbjct: 632 ggcctaggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgtt 575
>gb|DR683411.1|DR683411 EST1073487 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG84 3' end, mRNA sequence
Length = 609
Score = 60.0 bits (30), Expect = 1e-007
Identities = 162/206 (78%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||| ||||||||||
Sbjct: 565 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaataccaatcttgttt 506
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 505 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 446
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 445 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 386
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 385 accttggcataataatctttccagac 360
>gb|DT631650.1|DT631650 EST1146581 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFB15 3' end, mRNA sequence
Length = 749
Score = 60.0 bits (30), Expect = 1e-007
Identities = 162/206 (78%)
Strand = Plus / Minus
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|||||||||| ||| |||||||| |||||||| || ||||| || ||| ||||||||||
Sbjct: 689 aggcctaggtaatagcgcagctcatcttcagatgctgcatatggaataccaatcttgttt 630
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| | || | || || ||||||| ||| ||||||||||| || | || || ||||||
Sbjct: 629 cctaaaatcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcc 570
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
||||||| || ||||||| ||| ||||| ||||| |||| || || ||||||||
Sbjct: 569 ttttttgcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatcc 510
Query: 615 acctttgcgtagtaatccttccagac 640
||||| || || ||||| ||||||||
Sbjct: 509 accttggcataataatctttccagac 484
>gb|BE123509.1|BE123509 NXNV_149_A09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_149_A09 5' similar to Arabidopsis thaliana
sequence At4g02080 SAR1/GTP-binding secretory factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 277
Score = 56.0 bits (28), Expect = 2e-006
Identities = 157/200 (78%)
Strand = Plus / Minus
Query: 441 aggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaagg 500
|||| ||| |||||||| |||||||| || ||||| || |||||||||||||| || |
Sbjct: 252 aggtaatagcgcagctcatcttcagatgctgcatatggaatatcaatcttgtttcctaaa 193
Query: 501 atgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctttttt 560
|| | || || ||||||| ||| ||||||||||| || | || || ||||||||||||
Sbjct: 192 atcaagaaaggcacatttgtcaaagaatcatctgaaagtaaggcatcgagctcctttttt 133
Query: 561 gattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaaccttt 620
| || ||||||| ||| ||||| ||||| |||| || || |||||||| |||||
Sbjct: 132 gcctccgcaaatctctctttatccgcggcatcaaccaaatagaccacagcatccaccttg 73
Query: 621 gcgtagtaatccttccagac 640
|| || ||||| ||||||||
Sbjct: 72 gcataataatctttccagac 53
>gb|CF394792.1|CF394792 RTDS2_7_F10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_F10_A021 5', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.11
Identities = 101/128 (78%)
Strand = Plus / Minus
Query: 513 acatttgccaaggaatcatctgacaggagagcgtccagctccttttttgattcagcaaat 572
||||||| ||| ||||||||||| || | || || ||||||||||||| || ||||||
Sbjct: 721 acatttgtcaaagaatcatctgaaagtaaggcatcgagctccttttttgcctccgcaaat 662
Query: 573 cgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaatcc 632
| ||| ||||| ||||| |||| || || |||||||| ||||| || || |||||
Sbjct: 661 ctctctttatccgcggcatcaaccaaatagaccacagcatccaccttggcataataatct 602
Query: 633 ttccagac 640
||||||||
Sbjct: 601 ttccagac 594
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,202
Number of Sequences: 355925
Number of extensions: 73202
Number of successful extensions: 18136
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18070
Number of HSP's gapped (non-prelim): 66
length of query: 643
length of database: 217,277,237
effective HSP length: 19
effective length of query: 624
effective length of database: 210,514,662
effective search space: 131361149088
effective search space used: 131361149088
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)