BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440958.2.1
(791 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus pota... 58 6e-007
gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clon... 40 0.13
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 40 0.13
gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism... 40 0.13
>gb|CO370451.1|CO370451 RTK1_68_A10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_A10_A029 3', mRNA sequence
Length = 824
Score = 58.0 bits (29), Expect = 6e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 240 aagtcgattatacatgactggggtgatgccgactgtgtcaagatactgaagaactgcaag 299
|||| |||||| |||||||||||||| | |||||| |||||||||||||| ||||| |
Sbjct: 147 aagtggattatgcatgactggggtgacgaggactgtatcaagatactgaagcgctgcagg 206
Query: 300 aaggc 304
|||||
Sbjct: 207 aaggc 211
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.13
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaaga 291
||||||||||| || | |||||| |||||||||||||||
Sbjct: 246 catgactggggcgacgaggactgtatcaagatactgaaga 285
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.13
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 252 catgactggggtgatgccgactgtgtcaagatactgaaga 291
||||||||||| || | |||||| |||||||||||||||
Sbjct: 246 catgactggggcgacgaggactgtatcaagatactgaaga 285
>gb|CO197585.1|CO197585 GEO1_7_B10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_B10_A029 5', mRNA sequence
Length = 777
Score = 40.1 bits (20), Expect = 0.13
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 270 gactgtgtcaagatactgaagaactgca 297
|||||| |||||||||||||||| ||||
Sbjct: 447 gactgtatcaagatactgaagaattgca 420
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,476
Number of Sequences: 355925
Number of extensions: 81476
Number of successful extensions: 20245
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20240
Number of HSP's gapped (non-prelim): 5
length of query: 791
length of database: 217,277,237
effective HSP length: 19
effective length of query: 772
effective length of database: 210,514,662
effective search space: 162517319064
effective search space used: 162517319064
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)