BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440612.2.2
(665 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV135318.1|CV135318 EST846527 Sequencing ESTs from loblo... 40 0.11
gb|DT626033.1|DT626033 EST1157957 Sequencing ESTs from lobl... 40 0.11
gb|CF391916.1|CF391916 RTDR3_10_G03.g1_A022 Loblolly pine r... 38 0.44
gb|CF477448.1|CF477448 RTWW3_7_C11.g1_A022 Well-watered lob... 38 0.44
gb|CO167111.1|CO167111 FLD1_66_H09.g1_A029 Root flooded Pin... 38 0.44
gb|CO366742.1|CO366742 RTK1_29_F11.g1_A029 Roots minus pota... 38 0.44
gb|CV035992.1|CV035992 RTNACL1_43_H07.g1_A029 Roots plus ad... 38 0.44
gb|DR012859.1|DR012859 HEAT1_15_A07.g1_A029 Root at 37 C fo... 38 0.44
gb|DR014174.1|DR014174 HEAT1_23_G11.g1_A029 Root at 37 C fo... 38 0.44
gb|DR022739.1|DR022739 STRS1_53_D05.b1_A034 Shoot tip pitch... 38 0.44
gb|DR059739.1|DR059739 RTNIT1_19_B05.g1_A029 Roots minus ni... 38 0.44
gb|DR163596.1|DR163596 RTFE1_43_G05.g1_A029 Roots minus iro... 38 0.44
gb|DR177658.1|DR177658 RTMNUT1_6_D07.g1_A029 Roots minus mi... 38 0.44
gb|AY680404.1| Pinus taeda homeobox transcription factor KN... 38 0.44
>gb|CV135318.1|CV135318 EST846527 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICMA49 5' end, mRNA sequence
Length = 873
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgaggac 514
||||||||||||||||| ||||||
Sbjct: 849 gaggaggagcaggaggaggaggac 872
>gb|DT626033.1|DT626033 EST1157957 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA636 5' end, mRNA sequence
Length = 930
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgaggac 514
||||||||||||||||| ||||||
Sbjct: 849 gaggaggagcaggaggaggaggac 872
>gb|CF391916.1|CF391916 RTDR3_10_G03.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_G03_A022 5', mRNA
sequence
Length = 768
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||| |||||||||||||
Sbjct: 101 gaggaggaggaggaggacgagga 123
>gb|CF477448.1|CF477448 RTWW3_7_C11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_7_C11_A022 5', mRNA sequence
Length = 652
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||| |||||||||||||
Sbjct: 83 gaggaggaggaggaggacgagga 105
>gb|CO167111.1|CO167111 FLD1_66_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_66_H09_A029 5', mRNA sequence
Length = 618
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||||||||||| |||||
Sbjct: 585 gaggaggagcaggaggaggagga 607
>gb|CO366742.1|CO366742 RTK1_29_F11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_F11_A029 5', mRNA sequence
Length = 743
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||| |||||||||||||
Sbjct: 601 gaggaggaggaggaggacgagga 623
>gb|CV035992.1|CV035992 RTNACL1_43_H07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_43_H07_A029 5', mRNA sequence
Length = 792
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||| |||||||||||||
Sbjct: 42 gaggaggaggaggaggacgagga 64
>gb|DR012859.1|DR012859 HEAT1_15_A07.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_A07_A029 5', mRNA sequence
Length = 644
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 492 aggaggagcaggaggacgaggac 514
|||||||||||||||| ||||||
Sbjct: 565 aggaggagcaggaggaggaggac 543
>gb|DR014174.1|DR014174 HEAT1_23_G11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_23_G11_A029 5', mRNA sequence
Length = 818
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 393 cagttgttgctgctcatgc 411
|||||||||||||||||||
Sbjct: 521 cagttgttgctgctcatgc 503
>gb|DR022739.1|DR022739 STRS1_53_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_53_D05_A034 3', mRNA sequence
Length = 352
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||||||||||| |||||
Sbjct: 56 gaggaggagcaggaggaggagga 34
>gb|DR059739.1|DR059739 RTNIT1_19_B05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_B05_A029 5', mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||||||||||| |||||
Sbjct: 366 gaggaggagcaggaggaggagga 388
>gb|DR163596.1|DR163596 RTFE1_43_G05.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_G05_A029 5', mRNA sequence
Length = 813
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||||||||||| |||||
Sbjct: 367 gaggaggagcaggaggaggagga 389
>gb|DR177658.1|DR177658 RTMNUT1_6_D07.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_6_D07_A029 5', mRNA sequence
Length = 532
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||||||||||| |||||
Sbjct: 44 gaggaggagcaggaggaggagga 66
>gb|AY680404.1| Pinus taeda homeobox transcription factor KN3 (Kn3) mRNA, complete
cds
Length = 1903
Score = 38.2 bits (19), Expect = 0.44
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 491 gaggaggagcaggaggacgagga 513
||||||||| |||||||||||||
Sbjct: 490 gaggaggaggaggaggacgagga 512
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,336
Number of Sequences: 355925
Number of extensions: 70336
Number of successful extensions: 18708
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18692
Number of HSP's gapped (non-prelim): 16
length of query: 665
length of database: 217,277,237
effective HSP length: 19
effective length of query: 646
effective length of database: 210,514,662
effective search space: 135992471652
effective search space used: 135992471652
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)