BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440568.2.1
(1135 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO166154.1|CO166154 FLD1_59_E11.g1_A029 Root flooded Pin... 151 7e-035
gb|CO199093.1|CO199093 GEO1_18_F06.g1_A029 Root gravitropis... 143 2e-032
gb|CO199698.1|CO199698 GEO2_3_A04.b1_A032 Root gravitropism... 143 2e-032
gb|CO364807.1|CO364807 RTK1_21_H09.g1_A029 Roots minus pota... 143 2e-032
gb|CV032646.1|CV032646 RTNACL1_17_B05.g1_A029 Roots plus ad... 143 2e-032
gb|CX649179.1|CX649179 COLD1_33_B01.g1_A029 Root cold Pinus... 143 2e-032
gb|DR059653.1|DR059653 RTNIT1_19_A07.b1_A029 Roots minus ni... 143 2e-032
gb|DR117053.1|DR117053 RTMG1_4_A01.g1_A029 Roots minus magn... 143 2e-032
gb|DR117868.1|DR117868 RTMG1_9_E09.g1_A029 Roots minus magn... 141 7e-032
gb|DR179373.1|DR179373 RTMNUT1_21_E10.g2_A029 Roots minus m... 137 1e-030
gb|AW758611.1|AW758611 NXNV_075_F03_F Nsf Xylem Normal wood... 127 1e-027
gb|CV035181.1|CV035181 RTNACL1_14_F04.b1_A029 Roots plus ad... 103 2e-020
gb|CX648326.1|CX648326 COLD1_28_A03.b1_A029 Root cold Pinus... 103 2e-020
gb|BX250903.1|BX250903 BX250903 Pinus pinaster differenciat... 100 2e-019
gb|CF479618.1|CF479618 RTWW3_11_B10.b1_A022 Well-watered lo... 100 2e-019
gb|DR057067.1|DR057067 RTNIT1_2_G06.b1_A029 Roots minus nit... 100 2e-019
gb|DR059731.1|DR059731 RTNIT1_19_A07.g1_A029 Roots minus ni... 100 2e-019
gb|DR109526.1|DR109526 RTS1_3_A02.b1_A029 Roots minus sulfu... 100 2e-019
gb|DR119731.1|DR119731 RTMG1_25_D07.b1_A029 Roots minus mag... 100 2e-019
gb|DR179297.1|DR179297 RTMNUT1_21_E10.b2_A029 Roots minus m... 100 2e-019
gb|CF388596.1|CF388596 RTDR2_4_G03.g1_A021 Loblolly pine ro... 96 4e-018
gb|CF479736.1|CF479736 RTWW3_11_B10.g1_A022 Well-watered lo... 96 4e-018
gb|BE643669.1|BE643669 NXCI_041_E04_F NXCI (Nsf Xylem Compr... 92 6e-017
gb|CX650418.1|CX650418 COLD1_45_C02.g1_A029 Root cold Pinus... 92 6e-017
gb|CO196803.1|CO196803 GEO1_1_D11.g1_A029 Root gravitropism... 88 9e-016
gb|DR097452.1|DR097452 STRR1_34_F01.g3_A033 Stem Response R... 88 9e-016
gb|DR684696.1|DR684696 EST1074773 Normalized pine embryo li... 86 4e-015
gb|AW758745.1|AW758745 NXNV_089_A12_F Nsf Xylem Normal wood... 84 1e-014
gb|CV035245.1|CV035245 RTNACL1_14_F04.g1_A029 Roots plus ad... 84 1e-014
gb|CO162520.1|CO162520 FLD1_35_G08.g1_A029 Root flooded Pin... 82 6e-014
gb|CX652963.1|CX652963 COLD1_62_C06.g1_A029 Root cold Pinus... 82 6e-014
gb|DR092446.1|DR092446 STRR1_1_A05.g1_A033 Stem Response Re... 82 6e-014
gb|BQ655622.1|BQ655622 NXRV096_H10_F NXRV (Nsf Xylem Root w... 76 4e-012
gb|CX651001.1|CX651001 COLD1_49_B02.g1_A029 Root cold Pinus... 76 4e-012
gb|DN462343.1|DN462343 EST958142 Sequencing ESTs from loblo... 76 4e-012
gb|DR055876.1|DR055876 RTCA1_26_B11.g1_A029 Roots minus cal... 76 4e-012
gb|DR176904.1|DR176904 RTMNUT1_1_F02.g1_A029 Roots minus mi... 76 4e-012
gb|DT626859.1|DT626859 EST1159935 Sequencing ESTs from lobl... 76 4e-012
gb|BQ699948.1|BQ699948 NXRV132_B07_F NXRV (Nsf Xylem Root w... 74 1e-011
gb|BQ701997.1|BQ701997 NXSI_123_B05_F NXSI (Nsf Xylem Side ... 74 1e-011
gb|CF385731.1|CF385731 RTDR1_5_C07.g1_A015 Loblolly pine ro... 74 1e-011
gb|CF391262.1|CF391262 RTDR3_4_D07.g1_A022 Loblolly pine ro... 74 1e-011
gb|DN609116.1|DN609116 EST962166 Subtracted pine embryo lib... 74 1e-011
gb|DN610814.1|DN610814 EST963864 Subtracted pine embryo lib... 74 1e-011
gb|DN612637.1|DN612637 EST965687 Subtracted pine embryo lib... 74 1e-011
gb|DR020501.1|DR020501 STRS1_37_A04.g1_A034 Shoot tip pitch... 74 1e-011
gb|DR180714.1|DR180714 RTMNUT1_34_H07.b1_A029 Roots minus m... 74 1e-011
gb|DN609119.1|DN609119 EST962169 Subtracted pine embryo lib... 70 2e-010
gb|DR681853.1|DR681853 EST1071928 Normalized pine embryo li... 70 2e-010
gb|BM492145.1|BM492145 NXRV_021_C11_F NXRV (Nsf Xylem Root ... 68 9e-010
gb|CO199777.1|CO199777 GEO2_3_A04.g1_A032 Root gravitropism... 68 9e-010
gb|CF672063.1|CF672063 RTCNT1_61_C11.b1_A029 Root control P... 66 3e-009
gb|DR694353.1|DR694353 EST1084445 Normalized pine embryo li... 64 1e-008
gb|BX252090.1|BX252090 BX252090 Pinus pinaster differenciat... 62 5e-008
gb|CF386041.1|CF386041 RTDR1_7_A11.g1_A015 Loblolly pine ro... 60 2e-007
gb|CF477548.1|CF477548 RTWW3_8_A09.g1_A022 Well-watered lob... 60 2e-007
gb|CF479025.1|CF479025 RTWW3_21_C07.g1_A022 Well-watered lo... 60 2e-007
gb|CO160756.1|CO160756 FLD1_24_C04.b1_A029 Root flooded Pin... 60 2e-007
gb|DN463475.1|DN463475 EST959274 Sequencing ESTs from loblo... 60 2e-007
gb|DR096141.1|DR096141 STRR1_26_B03.b1_A033 Stem Response R... 60 2e-007
gb|DR096208.1|DR096208 STRR1_26_B03.g1_A033 Stem Response R... 60 2e-007
gb|DR161873.1|DR161873 RTFE1_14_A03.g1_A029 Roots minus iro... 60 2e-007
gb|DR385266.1|DR385266 RTHG1_7_D05.g1_A029 Roots plus added... 60 2e-007
gb|DT625008.1|DT625008 EST1159283 Sequencing ESTs from lobl... 60 2e-007
gb|CX652877.1|CX652877 COLD1_62_C06.b1_A029 Root cold Pinus... 58 8e-007
gb|DR047992.1|DR047992 RTBOR1_6_A03.b2_A029 Roots plus adde... 56 3e-006
gb|DR109605.1|DR109605 RTS1_3_A02.g1_A029 Roots minus sulfu... 56 3e-006
gb|AW010140.1|AW010140 ST02D12 Pine TriplEx shoot tip libra... 52 5e-005
gb|CD018659.1|CD018659 NXLV_041_C11_F NXLV (Nsf Xylem Late ... 52 5e-005
gb|CF672133.1|CF672133 RTCNT1_61_C11.g1_A029 Root control P... 52 5e-005
gb|DR010947.1|DR010947 HEAT1_2_G07.b1_A029 Root at 37 C for... 50 2e-004
gb|DT635729.1|DT635729 EST1150660 Normalized pine embryo li... 50 2e-004
gb|DT635766.1|DT635766 EST1150697 Normalized pine embryo li... 50 2e-004
gb|DR011020.1|DR011020 HEAT1_2_G07.g1_A029 Root at 37 C for... 48 8e-004
gb|CO364718.1|CO364718 RTK1_21_H09.b1_A029 Roots minus pota... 46 0.003
gb|DR117790.1|DR117790 RTMG1_9_E09.b1_A029 Roots minus magn... 46 0.003
gb|CF476188.1|CF476188 RTWW2_21_F05.g1_A021 Well-watered lo... 44 0.012
gb|CF478432.1|CF478432 RTWW3_20_F11.b1_A022 Well-watered lo... 44 0.012
gb|CO159647.1|CO159647 FLD1_14_H07.g1_A029 Root flooded Pin... 44 0.012
gb|CX649748.1|CX649748 COLD1_41_F04.b1_A029 Root cold Pinus... 44 0.012
gb|CX649831.1|CX649831 COLD1_41_F04.g1_A029 Root cold Pinus... 44 0.012
gb|DR010903.1|DR010903 HEAT1_2_C01.b1_A029 Root at 37 C for... 44 0.012
gb|DR053608.1|DR053608 RTCA1_12_E12.b1_A029 Roots minus cal... 44 0.012
gb|DR053691.1|DR053691 RTCA1_12_E12.g1_A029 Roots minus cal... 44 0.012
gb|DR056972.1|DR056972 RTNIT1_1_F04.g1_A029 Roots minus nit... 44 0.012
gb|BX248859.1|BX248859 BX248859 Pinus pinaster differenciat... 42 0.049
gb|BX250004.1|BX250004 BX250004 Pinus pinaster differenciat... 42 0.049
gb|BX250129.1|BX250129 BX250129 Pinus pinaster differenciat... 42 0.049
gb|BX254523.1|BX254523 BX254523 Pinus pinaster differenciat... 42 0.049
gb|BF517925.1|BF517925 NXSI_031_F12_F NXSI (Nsf Xylem Side ... 42 0.049
gb|BQ696138.1|BQ696138 NXPV_036_G08_F NXPV (Nsf Xylem Plani... 42 0.049
gb|BQ696313.1|BQ696313 NXPV_037_H06_F NXPV (Nsf Xylem Plani... 42 0.049
gb|BQ697386.1|BQ697386 NXPV_053_E03_F NXPV (Nsf Xylem Plani... 42 0.049
gb|BQ698596.1|BQ698596 NXPV_071_G11_F NXPV (Nsf Xylem Plani... 42 0.049
gb|CD021877.1|CD021877 NXNV_171_F04_F Nsf Xylem Normal wood... 42 0.049
gb|DR688648.1|DR688648 EST1078733 Normalized pine embryo li... 42 0.049
gb|DT634654.1|DT634654 EST1149585 Normalized pine embryo li... 42 0.049
dbj|BD267190.1| Compositions isolated from plant cells and ... 42 0.049
dbj|BD267395.1| Compositions isolated from plant cells and ... 42 0.049
gb|AA556197.1|AA556197 52 Loblolly pine N Pinus taeda cDNA ... 40 0.19
gb|AW758596.1|AW758596 NXNV_075_D01_F Nsf Xylem Normal wood... 40 0.19
gb|BG039780.1|BG039780 NXSI_103_H09_F NXSI (Nsf Xylem Side ... 40 0.19
gb|BG275709.1|BG275709 NXSI_145_A01_F NXSI (Nsf Xylem Side ... 40 0.19
gb|BG317870.1|BG317870 NXPV_006_F08_F NXPV (Nsf Xylem Plani... 40 0.19
gb|BG318467.1|BG318467 NXPV_014_A02_F NXPV (Nsf Xylem Plani... 40 0.19
gb|BG318649.1|BG318649 NXPV_017_D06_F NXPV (Nsf Xylem Plani... 40 0.19
gb|BI076972.1|BI076972 NXPV_085_D11_F NXPV (Nsf Xylem Plani... 40 0.19
gb|BI643851.1|BI643851 NXPV_123_G06_F NXPV (Nsf Xylem Plani... 40 0.19
gb|BQ695489.1|BQ695489 NXPV_025_B05_F NXPV (Nsf Xylem Plani... 40 0.19
gb|BQ697080.1|BQ697080 NXPV_049_C06_F NXPV (Nsf Xylem Plani... 40 0.19
gb|CD025834.1|CD025834 NXSI_083_A03_F NXSI (Nsf Xylem Side ... 40 0.19
gb|BX681873.1|BX681873 BX681873 RS Pinus pinaster cDNA clon... 40 0.19
gb|CO200331.1|CO200331 GEO2_6_G03.g1_A032 Root gravitropism... 40 0.19
gb|CO365214.1|CO365214 RTK1_24_G12.b1_A029 Roots minus pota... 40 0.19
gb|CX713814.1|CX713814 RTPQ1_13_B05.g1_A032 Roots treated w... 40 0.19
gb|DR079189.1|DR079189 RTFEPL1_9_E02.g1_A029 Roots plus add... 40 0.19
gb|DR112952.1|DR112952 RTS1_31_H04.g1_A029 Roots minus sulf... 40 0.19
gb|DR180794.1|DR180794 RTMNUT1_34_H07.g1_A029 Roots minus m... 40 0.19
gb|DR684896.1|DR684896 EST1074973 Normalized pine embryo li... 40 0.19
gb|DR694488.1|DR694488 EST1084580 Normalized pine embryo li... 40 0.19
>gb|CO166154.1|CO166154 FLD1_59_E11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E11_A029 5', mRNA sequence
Length = 912
Score = 151 bits (76), Expect = 7e-035
Identities = 395/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 829 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 770
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 769 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 712
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 711 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 652
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 651 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 592
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 591 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 536
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| ||||| || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 535 ggagcatgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 476
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 475 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 416
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 415 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 356
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 355 tcaagccctttcgctgc 339
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 274 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 219
>gb|CO199093.1|CO199093 GEO1_18_F06.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_18_F06_A029 5', mRNA sequence
Length = 804
Score = 143 bits (72), Expect = 2e-032
Identities = 394/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Plus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 286 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 345
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 346 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 403
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 404 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 463
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 464 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 523
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 524 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 579
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 580 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 639
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 640 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 699
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 700 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 759
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 760 tcaagccctttcgctgc 776
>gb|CO199698.1|CO199698 GEO2_3_A04.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_3_A04_A032 3', mRNA sequence
Length = 785
Score = 143 bits (72), Expect = 2e-032
Identities = 394/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 519 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 460
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 459 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 402
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 401 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 342
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 341 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 282
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 281 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 226
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 225 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 166
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 165 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 106
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 105 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 46
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 45 tcaagccctttcgctgc 29
>gb|CO364807.1|CO364807 RTK1_21_H09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_H09_A029 5', mRNA sequence
Length = 795
Score = 143 bits (72), Expect = 2e-032
Identities = 394/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 675 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 616
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 615 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 558
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 557 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 498
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 497 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 438
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 437 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 382
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 381 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 322
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 321 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 262
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 261 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 202
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 201 tcaagccctttcgctgc 185
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 120 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 65
>gb|CV032646.1|CV032646 RTNACL1_17_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_17_B05_A029 5', mRNA sequence
Length = 851
Score = 143 bits (72), Expect = 2e-032
Identities = 394/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 506 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 447
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 446 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 389
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 388 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 329
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 328 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 269
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 268 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 213
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 212 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 153
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 152 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 93
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 92 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 33
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 32 tcaagccctttcgctgc 16
>gb|CX649179.1|CX649179 COLD1_33_B01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_33_B01_A029 5', mRNA sequence
Length = 849
Score = 143 bits (72), Expect = 2e-032
Identities = 394/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Plus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 322 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 381
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 382 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 439
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 440 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 499
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 500 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 559
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 560 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 615
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 616 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 675
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 676 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 735
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 736 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 795
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 796 tcaagccctttcgctgc 812
>gb|DR059653.1|DR059653 RTNIT1_19_A07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_A07_A029 3', mRNA sequence
Length = 837
Score = 143 bits (72), Expect = 2e-032
Identities = 394/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Plus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 182 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 241
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 242 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 299
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 300 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 359
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 360 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 419
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 420 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 475
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 476 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 535
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 536 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 595
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 596 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 655
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 656 tcaagccctttcgctgc 672
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 737 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 792
>gb|DR117053.1|DR117053 RTMG1_4_A01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_A01_A029 5', mRNA sequence
Length = 782
Score = 143 bits (72), Expect = 2e-032
Identities = 394/497 (79%), Gaps = 12/497 (2%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 673 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 614
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 613 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 556
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 555 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 496
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 495 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 436
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 435 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 380
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 379 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 320
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 319 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 260
Query: 699 acgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagatac 758
|| |||||||| | || || ||||| |||||||| || || ||||||||||||||||||
Sbjct: 259 acattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagatac 200
Query: 759 tcgaggcctttcgctgc 775
|| || |||||||||||
Sbjct: 199 tcaagccctttcgctgc 183
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 118 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 63
>gb|DR117868.1|DR117868 RTMG1_9_E09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_9_E09_A029 5', mRNA sequence
Length = 726
Score = 141 bits (71), Expect = 7e-032
Identities = 304/381 (79%), Gaps = 8/381 (2%)
Strand = Plus / Minus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
||||||||||| | || |||||||| || | |||||| || ||||| || ||||| ||
Sbjct: 655 tcaacacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctt 596
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
|| |||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| |||
Sbjct: 595 tgttgtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggaga 536
Query: 519 acaaccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcata 574
|| |||||||| ||||||||||||||||| |||||| || || ||||| |||||
Sbjct: 535 accaccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcata 480
Query: 575 ctcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccat 634
||||| || || || || || ||||| ||||| | ||| || ||||| || || |||||
Sbjct: 479 ttcaggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccat 420
Query: 635 gtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaag 694
|||||||||||| || || |||| ||| ||||| || || ||| || ||| || |||||
Sbjct: 419 gtcaggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaag 360
Query: 695 aaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaag 754
||| || |||||||| | || || ||||| |||||||| || || ||||||||||||||
Sbjct: 359 aagaacattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaag 300
Query: 755 atactcgaggcctttcgctgc 775
|||||| || |||||||||||
Sbjct: 299 atactcaagccctttcgctgc 279
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 214 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 159
>gb|DR179373.1|DR179373 RTMNUT1_21_E10.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_E10_A029 5', mRNA sequence
Length = 714
Score = 137 bits (69), Expect = 1e-030
Identities = 290/363 (79%), Gaps = 8/363 (2%)
Strand = Plus / Minus
Query: 417 ttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggcaat 476
|||||||| || | |||||| || ||||| || ||||| || || |||||||| |||| |
Sbjct: 698 ttgtcttcactcaatcttggagttgcccaagtaacaaggctttgttgtcccctaggcatt 639
Query: 477 gtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaaccccaaaactatat 536
|||||||| ||||| ||||| || ||||| || ||||| ||||| |||||||| ||||||
Sbjct: 638 gtatggtccacaggcttccttcctgtcaaaagttcaaggagaaccaccccaaagctatat 579
Query: 537 acatcactcttagagctgagt----tgcccagtcatcgcatactcaggcgcatggtatcc 592
||||||||||| |||||| || || ||||| ||||| ||||| || || || ||
Sbjct: 578 acatcactctt----ctgagtcaactgacctgtcatggcatattcaggagcgtgatagcc 523
Query: 593 gaatgttccgagaaccctagttgagtgaagccgagctgccatgtcaggagcttggttcga 652
|| ||||| ||||| | ||| || ||||| || || ||||||||||||||||| || ||
Sbjct: 522 aaaagttcccagaacacgagtggaatgaagtcgggcagccatgtcaggagcttgatttga 463
Query: 653 cagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggacgttgctagactt 712
|||| ||| ||||| || || ||| || ||| || |||||||| || |||||||| |
Sbjct: 462 aagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaagaacattgctagatct 403
Query: 713 gatgtctcggtgtatgatatggggctgcgctttctcatgaagatactcgaggcctttcgc 772
|| || ||||| |||||||| || || |||||||||||||||||||| || ||||||||
Sbjct: 402 aatatcacggtggatgatatgaggttgagctttctcatgaagatactcaagccctttcgc 343
Query: 773 tgc 775
|||
Sbjct: 342 tgc 340
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 275 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 220
>gb|AW758611.1|AW758611 NXNV_075_F03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_075_F03 5' similar to Arabidopsis thaliana
sequence At3g59350 protein kinase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 399
Score = 127 bits (64), Expect = 1e-027
Identities = 255/318 (80%), Gaps = 8/318 (2%)
Strand = Plus / Minus
Query: 462 tgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaaca 521
|||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| |||||
Sbjct: 369 tgtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacc 310
Query: 522 accccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactc 577
|||||||| ||||||||||||||||| |||||| || || ||||| ||||| ||
Sbjct: 309 accccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattc 254
Query: 578 aggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtc 637
||| || || || || || ||||| ||||| | ||| || ||||| || || ||||||||
Sbjct: 253 aggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtc 194
Query: 638 aggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaag 697
||||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 193 aggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaag 134
Query: 698 gacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaagata 757
|| |||||||| | || || ||||| |||||||| || || |||||||||||||||||
Sbjct: 133 aacattgctagatctaatatcacggtggatgatatgaggttgagctttctcatgaagata 74
Query: 758 ctcgaggcctttcgctgc 775
||| || |||||||||||
Sbjct: 73 ctcaagccctttcgctgc 56
>gb|CV035181.1|CV035181 RTNACL1_14_F04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_14_F04_A029 3', mRNA sequence
Length = 805
Score = 103 bits (52), Expect = 2e-020
Identities = 308/389 (79%), Gaps = 12/389 (3%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 388 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 329
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 328 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 271
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 270 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 211
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 210 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 151
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 150 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 95
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| ||||| || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 94 ggagcatgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 35
Query: 639 ggagcttggttcgacagatcaaagtcagc 667
|||||||| || || |||| ||| |||||
Sbjct: 34 ggagcttgatttgaaagattaaaatcagc 6
>gb|CX648326.1|CX648326 COLD1_28_A03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_A03_A029 3', mRNA sequence
Length = 674
Score = 103 bits (52), Expect = 2e-020
Identities = 308/389 (79%), Gaps = 12/389 (3%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 409 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 350
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 349 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 292
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 291 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 232
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 231 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 172
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 171 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 116
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| ||||| || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 115 ggagcatgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 56
Query: 639 ggagcttggttcgacagatcaaagtcagc 667
|||||||| || || |||| ||| |||||
Sbjct: 55 ggagcttgatttgaaagattaaaatcagc 27
>gb|BX250903.1|BX250903 BX250903 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042F12 similar to PROTEIN KINASE APK1B,
mRNA sequence
Length = 664
Score = 99.6 bits (50), Expect = 2e-019
Identities = 214/265 (80%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 415 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 356
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 355 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 298
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 297 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 238
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 237 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 178
Query: 523 ccccaaaactatatacatcactctt 547
||||||| |||||||||||||||||
Sbjct: 177 ccccaaagctatatacatcactctt 153
>gb|CF479618.1|CF479618 RTWW3_11_B10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_11_B10_A022 3', mRNA sequence
Length = 548
Score = 99.6 bits (50), Expect = 2e-019
Identities = 214/265 (80%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 282 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 223
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 222 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 165
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 164 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 105
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 104 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 45
Query: 523 ccccaaaactatatacatcactctt 547
||||||| |||||||||||||||||
Sbjct: 44 ccccaaagctatatacatcactctt 20
>gb|DR057067.1|DR057067 RTNIT1_2_G06.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_2_G06_A029 3', mRNA sequence
Length = 784
Score = 99.6 bits (50), Expect = 2e-019
Identities = 214/265 (80%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 393 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 334
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 333 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 276
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 275 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 216
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 215 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 156
Query: 523 ccccaaaactatatacatcactctt 547
||||||| |||||||||||||||||
Sbjct: 155 ccccaaagctatatacatcactctt 131
>gb|DR059731.1|DR059731 RTNIT1_19_A07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_A07_A029 5', mRNA sequence
Length = 797
Score = 99.6 bits (50), Expect = 2e-019
Identities = 339/431 (78%), Gaps = 12/431 (2%)
Strand = Plus / Plus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 360 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 419
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 420 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 477
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 478 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 537
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 538 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 597
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 598 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 653
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 654 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 713
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 714 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 773
Query: 699 acgttgctaga 709
|| ||||||||
Sbjct: 774 acattgctaga 784
>gb|DR109526.1|DR109526 RTS1_3_A02.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_A02_A029 3', mRNA sequence
Length = 647
Score = 99.6 bits (50), Expect = 2e-019
Identities = 214/265 (80%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 380 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 321
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 320 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 263
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 262 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 203
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 202 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 143
Query: 523 ccccaaaactatatacatcactctt 547
||||||| |||||||||||||||||
Sbjct: 142 ccccaaagctatatacatcactctt 118
>gb|DR119731.1|DR119731 RTMG1_25_D07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_D07_A029 3', mRNA sequence
Length = 558
Score = 99.6 bits (50), Expect = 2e-019
Identities = 214/265 (80%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 292 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 233
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 232 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 175
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 174 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 115
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 114 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 55
Query: 523 ccccaaaactatatacatcactctt 547
||||||| |||||||||||||||||
Sbjct: 54 ccccaaagctatatacatcactctt 30
>gb|DR179297.1|DR179297 RTMNUT1_21_E10.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_E10_A029 3', mRNA sequence
Length = 761
Score = 99.6 bits (50), Expect = 2e-019
Identities = 339/431 (78%), Gaps = 12/431 (2%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 429 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 370
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 369 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 312
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 311 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 252
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| || ||||| || ||||| ||||| |
Sbjct: 251 gtcccctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggagaacca 192
Query: 523 ccccaaaactatatacatcactcttagagctgagt----tgcccagtcatcgcatactca 578
||||||| ||||||||||||||||| |||||| || || ||||| ||||| |||
Sbjct: 191 ccccaaagctatatacatcactctt----ctgagtcaactgacctgtcatggcatattca 136
Query: 579 ggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtca 638
|| || || || || || ||||| ||||| | ||| || ||||| || || |||||||||
Sbjct: 135 ggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcgggcagccatgtca 76
Query: 639 ggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaagg 698
|||||||| || || |||| ||| ||||| || || ||| || ||| || ||||||||
Sbjct: 75 ggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtcaaaaagaaga 16
Query: 699 acgttgctaga 709
|| ||||||||
Sbjct: 15 acattgctaga 5
>gb|CF388596.1|CF388596 RTDR2_4_G03.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_G03_A021 5', mRNA
sequence
Length = 708
Score = 95.6 bits (48), Expect = 4e-018
Identities = 215/270 (79%), Gaps = 8/270 (2%)
Strand = Plus / Minus
Query: 510 tcaagaagaacaaccccaaaactatatacatcactcttagagctgagt----tgcccagt 565
||||| ||||| |||||||| ||||||||||||||||| |||||| || || ||
Sbjct: 702 tcaaggagaaccaccccaaagctatatacatcactctt----ctgagtcaactgacctgt 647
Query: 566 catcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccg 625
||| ||||| ||||| || || || || || ||||| ||||| | ||| || ||||| ||
Sbjct: 646 catggcatattcaggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcg 587
Query: 626 agctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtc 685
|| ||||||||||||||||| || || |||| ||| ||||| || || ||| || |||
Sbjct: 586 ggcagccatgtcaggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtc 527
Query: 686 atcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgcttt 745
|| |||||||| || |||||||| | || || ||||| |||||||| || || |||||
Sbjct: 526 gtcaaaaagaagaacattgctagatctaatatcacggtggatgatatgaggttgagcttt 467
Query: 746 ctcatgaagatactcgaggcctttcgctgc 775
||||||||||||||| || |||||||||||
Sbjct: 466 ctcatgaagatactcaagccctttcgctgc 437
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 372 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 317
>gb|CF479736.1|CF479736 RTWW3_11_B10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_11_B10_A022 5', mRNA sequence
Length = 675
Score = 95.6 bits (48), Expect = 4e-018
Identities = 215/270 (79%), Gaps = 8/270 (2%)
Strand = Plus / Minus
Query: 510 tcaagaagaacaaccccaaaactatatacatcactcttagagctgagt----tgcccagt 565
||||| ||||| |||||||| ||||||||||||||||| |||||| || || ||
Sbjct: 668 tcaaggagaaccaccccaaagctatatacatcactctt----ctgagtcaactgacctgt 613
Query: 566 catcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccg 625
||| ||||| ||||| || || || || || ||||| ||||| | ||| || ||||| ||
Sbjct: 612 catggcatattcaggagcgtgatagccaaaagttcccagaacacgagtggaatgaagtcg 553
Query: 626 agctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtc 685
|| ||||||||||||||||| || || |||| ||| ||||| || || ||| || |||
Sbjct: 552 ggcagccatgtcaggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtc 493
Query: 686 atcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgcttt 745
|| |||||||| || |||||||| | || || ||||| |||||||| || || |||||
Sbjct: 492 gtcaaaaagaagaacattgctagatctaatatcacggtggatgatatgaggttgagcttt 433
Query: 746 ctcatgaagatactcgaggcctttcgctgc 775
||||||||||||||| || |||||||||||
Sbjct: 432 ctcatgaagatactcaagccctttcgctgc 403
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 338 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 283
>gb|BE643669.1|BE643669 NXCI_041_E04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_041_E04 5' similar to Arabidopsis
thaliana sequence At2g43230 protein kinase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 282
Score = 91.7 bits (46), Expect = 6e-017
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
||||||||||| | || |||||||| || | |||||| || ||||| || ||||| ||
Sbjct: 162 tcaacacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctt 103
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
|| ||||| || |||| ||||||||| ||||| ||||| || ||||| || ||||| |||
Sbjct: 102 tgttgtccnctaggcattgtatggtccacaggcttccttcctgtcaaaagttcaaggaga 43
Query: 519 acaaccccaaaactatatacatcactctt 547
|| |||||||| |||||||||||||||||
Sbjct: 42 accaccccaaagctatatacatcactctt 14
>gb|CX650418.1|CX650418 COLD1_45_C02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_C02_A029 5', mRNA sequence
Length = 653
Score = 91.7 bits (46), Expect = 6e-017
Identities = 213/265 (80%), Gaps = 4/265 (1%)
Strand = Plus / Minus
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
||||||||||| |||||||| || || || || ||||| || || |||||||| || ||
Sbjct: 299 ttgacaacaatactcatgttaggacgaaaatctgcttcatactgcacacacaatgccgca 240
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtccc-ctccaagtcttgag-tcaa 402
||||| || | ||| |||||||| || |||||||| || | || ||| |||| | ||||
Sbjct: 239 acagcagccatctttgcaacagcctttggaggatattcactcttcaa--cttgggatcaa 182
Query: 403 cacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
||||||| | || |||||||| || | |||||| || ||||| || ||||| || || |
Sbjct: 181 cacactgctttactttgtcttcactcaatcttggagttgcccaagtaacaaggctttgtt 122
Query: 463 gtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaacaa 522
||||||| |||| ||||||||| ||||| ||||| | ||||| || ||||| ||||| |
Sbjct: 121 gtcccctaggcattgtatggtccacaggcttccttcatgtcaaaagttcaaggagaacca 62
Query: 523 ccccaaaactatatacatcactctt 547
||||||| |||||||||||||||||
Sbjct: 61 ccccaaagctatatacatcactctt 37
>gb|CO196803.1|CO196803 GEO1_1_D11.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_1_D11_A029 5', mRNA sequence
Length = 641
Score = 87.7 bits (44), Expect = 9e-016
Identities = 170/212 (80%)
Strand = Plus / Minus
Query: 564 gtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagc 623
||||| ||||| ||||| || || || || || ||||| ||||| | ||| || |||||
Sbjct: 609 gtcatggcatattcaggagcgtgatagccaaaagttcccagaacacgagtggaatgaagt 550
Query: 624 cgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcg 683
|| || ||||||||||||||||| || || |||| ||| ||||| || || ||| || |
Sbjct: 549 cgggcagccatgtcaggagcttgatttgaaagattaaaatcagcaattttggctgcaaag 490
Query: 684 tcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgct 743
|| || |||||||| || |||||||| | || || ||||| |||||||| || || |||
Sbjct: 489 tcgtcaaaaagaagaacattgctagatctaatatcacggtggatgatatgaggttgagct 430
Query: 744 ttctcatgaagatactcgaggcctttcgctgc 775
||||||||||||||||| || |||||||||||
Sbjct: 429 ttctcatgaagatactcaagccctttcgctgc 398
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 333 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 278
>gb|DR097452.1|DR097452 STRR1_34_F01.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_F01_A033 5', mRNA sequence
Length = 847
Score = 87.7 bits (44), Expect = 9e-016
Identities = 170/212 (80%)
Strand = Plus / Minus
Query: 564 gtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagc 623
||||| ||||| ||||| || || || || || ||||| ||||| | ||| || |||||
Sbjct: 834 gtcatggcatattcaggagcgtgatagccaaaagttcccagaacacgagtggaatgaagt 775
Query: 624 cgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcg 683
|| || ||||||||||||||||| || || |||| ||| ||||| || || ||| || |
Sbjct: 774 cgggcagccatgtcaggagcttgatttgaaagattaaaatcagcaattttggctgcaaag 715
Query: 684 tcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgct 743
|| || |||||||| || |||||||| | || || ||||| |||||||| || || |||
Sbjct: 714 tcgtcaaaaagaagaacattgctagatctaatatcacggtggatgatatgaggttgagct 655
Query: 744 ttctcatgaagatactcgaggcctttcgctgc 775
||||||||||||||||| || |||||||||||
Sbjct: 654 ttctcatgaagatactcaagccctttcgctgc 623
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 558 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 503
>gb|DR684696.1|DR684696 EST1074773 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAV65 3' end, mRNA sequence
Length = 606
Score = 85.7 bits (43), Expect = 4e-015
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 597 gttccgagaaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacaga 656
||||| ||||| | ||| || ||||| || || ||||||||||||||||| || || |||
Sbjct: 575 gttcccagaacacgagtggaatgaagtcgggcagccatgtcaggagcttgatttgaaaga 516
Query: 657 tcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatg 716
| ||| ||||| || || ||| || ||| || |||||||| || |||||||| | ||
Sbjct: 515 ttaaaatcagcaattttggctgcaaagtcgtcaaaaagaagaacattgctagatctaata 456
Query: 717 tctcggtgtatgatatggggctgcgctttctcatgaagatactcgaggcctttcgctgc 775
|| ||||| |||||||| || || |||||||||||||||||||| || |||||||||||
Sbjct: 455 tcacggtggatgatatgaggttgagctttctcatgaagatactcaagccctttcgctgc 397
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 332 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 277
>gb|AW758745.1|AW758745 NXNV_089_A12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_089_A12 5' similar to Arabidopsis thaliana
sequence At2g30740 putative protein kinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 385
Score = 83.8 bits (42), Expect = 1e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 630 gccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcg 689
||||||||||||||||| || || |||| ||| ||||| || || ||| || ||| ||
Sbjct: 343 gccatgtcaggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtca 284
Query: 690 aaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctca 749
|||||||| || |||||||| | || || ||||| |||||||| || || |||||||||
Sbjct: 283 aaaagaagaacattgctagatctaatatcacggtggatgatatgaggttgagctttctca 224
Query: 750 tgaagatactcgaggcctttcgctgc 775
||||||||||| || |||||||||||
Sbjct: 223 tgaagatactcaagccctttcgctgc 198
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 133 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 78
>gb|CV035245.1|CV035245 RTNACL1_14_F04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_14_F04_A029 5', mRNA sequence
Length = 849
Score = 83.8 bits (42), Expect = 1e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 630 gccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcg 689
||||||||||||||||| || || |||| ||| ||||| || || ||| || ||| ||
Sbjct: 849 gccatgtcaggagcttgatttgaaagattaaaatcagcaattttggctgcaaagtcgtca 790
Query: 690 aaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctca 749
|||||||| || |||||||| | || || ||||| |||||||| || || |||||||||
Sbjct: 789 aaaagaagaacattgctagatctaatatcacggtggatgatatgaggttgagctttctca 730
Query: 750 tgaagatactcgaggcctttcgctgc 775
||||||||||| || |||||||||||
Sbjct: 729 tgaagatactcaagccctttcgctgc 704
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 639 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 584
>gb|CO162520.1|CO162520 FLD1_35_G08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_G08_A029 5', mRNA sequence
Length = 874
Score = 81.8 bits (41), Expect = 6e-014
Identities = 271/345 (78%), Gaps = 2/345 (0%)
Strand = Plus / Plus
Query: 426 ctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcg 485
||||| ||||| || ||||| || ||||| ||||| || || | ||||||||| || ||
Sbjct: 177 ctaagccttggggttgcccatgtgacaaggctctgttgaccacgtggcaatgtgtgatca 236
Query: 486 acaggtttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactc 545
|| ||||| || |||||||| |||||||| || |||| ||||| || || ||||||||
Sbjct: 237 actggttttctgccagtcaatagctcaaggaggacaatgccaaagctgtaaacatcactt 296
Query: 546 tta-gagctgagttgcccagtcatcgcatactcaggcgcatggtatccgaatgttccgag 604
|| ||| || ||| || |||||||| || || || |||||||| || |||||||| ||
Sbjct: 297 ttttgagtcga-ttgtcctgtcatcgcgtattctggagcatggtaaccaaatgttccaag 355
Query: 605 aaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacagatcaaagtc 664
|| | ||| || |||||||| || | ||||||||||| |||||| || | |||||| ||
Sbjct: 356 cacacgagtggaatgaagccgtgccgacatgtcaggagattggtttgatatatcaaaatc 415
Query: 665 agcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatgtctcggtg 724
||| ||||| ||| || ||| |||||||| | ||| ||||||||||| || || |||||
Sbjct: 416 agctatctttgctgtatagtcgtcgaaaagtaagacattgctagacttaatatcccggtg 475
Query: 725 tatgatatggggctgcgctttctcatgaagatactcgaggccttt 769
|||||| | || || || |||||||| || ||||| || |||||
Sbjct: 476 aatgataggcggttgtgccttctcatggaggtactccagcccttt 520
>gb|CX652963.1|CX652963 COLD1_62_C06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_C06_A029 5', mRNA sequence
Length = 795
Score = 81.8 bits (41), Expect = 6e-014
Identities = 271/345 (78%), Gaps = 2/345 (0%)
Strand = Plus / Minus
Query: 426 ctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcg 485
||||| ||||| || ||||| || ||||| ||||| || || | ||||||||| || ||
Sbjct: 758 ctaagccttggggttgcccatgtgacaaggctctgttgaccacgtggcaatgtgtgatca 699
Query: 486 acaggtttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactc 545
|| ||||| || |||||||| |||||||| || |||| ||||| || || ||||||||
Sbjct: 698 actggttttctgccagtcaatagctcaaggaggacaatgccaaagctgtaaacatcactt 639
Query: 546 tta-gagctgagttgcccagtcatcgcatactcaggcgcatggtatccgaatgttccgag 604
|| ||| || ||| || |||||||| || || || |||||||| || |||||||| ||
Sbjct: 638 ttttgagtcga-ttgtcctgtcatcgcgtattctggagcatggtaaccaaatgttccaag 580
Query: 605 aaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacagatcaaagtc 664
|| | ||| || |||||||| || | ||||||||||| |||||| || | |||||| ||
Sbjct: 579 cacacgagtggaatgaagccgtgccgacatgtcaggagattggtttgatatatcaaaatc 520
Query: 665 agcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatgtctcggtg 724
||| ||||| ||| || ||| |||||||| | ||| ||||||||||| || || |||||
Sbjct: 519 agctatctttgctgtatagtcgtcgaaaagtaagacattgctagacttaatatcccggtg 460
Query: 725 tatgatatggggctgcgctttctcatgaagatactcgaggccttt 769
|||||| | || || || |||||||| || ||||| || |||||
Sbjct: 459 aatgataggcggttgtgccttctcatggaggtactcaagcccttt 415
>gb|DR092446.1|DR092446 STRR1_1_A05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_A05_A033 5', mRNA sequence
Length = 849
Score = 81.8 bits (41), Expect = 6e-014
Identities = 271/345 (78%), Gaps = 2/345 (0%)
Strand = Plus / Minus
Query: 426 ctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcg 485
||||| ||||| || ||||| || ||||| ||||| || || | ||||||||| || ||
Sbjct: 349 ctaagccttggggttgcccatgtgacaaggctctgttgaccacgtggcaatgtgtgatca 290
Query: 486 acaggtttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactc 545
|| ||||| || |||||||| |||||||| || |||| ||||| || || ||||||||
Sbjct: 289 actggttttctgccagtcaatagctcaaggaggacaatgccaaagctgtaaacatcactt 230
Query: 546 tta-gagctgagttgcccagtcatcgcatactcaggcgcatggtatccgaatgttccgag 604
|| ||| || ||| || |||||||| || || || |||||||| || |||||||| ||
Sbjct: 229 ttttgagtcga-ttgtcctgtcatcgcgtattctggagcatggtaaccaaatgttccaag 171
Query: 605 aaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacagatcaaagtc 664
|| | ||| || |||||||| || | ||||||||||| |||||| || | |||||| ||
Sbjct: 170 cacacgagtggaatgaagccgtgccgacatgtcaggagattggtttgatatatcaaaatc 111
Query: 665 agcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatgtctcggtg 724
||| ||||| ||| || ||| |||||||| | ||| ||||||||||| || || |||||
Sbjct: 110 agctatctttgctgtatagtcgtcgaaaagtaagacattgctagacttaatatcccggtg 51
Query: 725 tatgatatggggctgcgctttctcatgaagatactcgaggccttt 769
|||||| | || || || |||||||| || ||||| || |||||
Sbjct: 50 aatgataggcggttgtgccttctcatggaggtactcaagcccttt 6
>gb|BQ655622.1|BQ655622 NXRV096_H10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV096_H10 5' similar to Arabidopsis thaliana
sequence At3g59350 protein kinase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 709
Score = 75.8 bits (38), Expect = 4e-012
Identities = 191/242 (78%)
Strand = Plus / Minus
Query: 729 atatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaaccgctatc 788
|||||||||||| ||||||||||||| |||||||| || || ||||| ||||| || ||
Sbjct: 466 atatggggctgcactttctcatgaaggtactcgagaccctttgctgcaccaacagcaatt 407
Query: 789 ttcacacgttgcgaccacgataagactggaccgggttgagcccctttaacccctttcctt 848
||||| | |||| ||| | |||||||| ||||||||||| | || ||||||| |
Sbjct: 406 ttcaccctttgcatccaatccagaactggacctggttgagccccctgcactcctttccgt 347
Query: 849 ccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggagt 908
||||| | || ||||| | || |||||||| || ||||||||||| | || |||||
Sbjct: 346 ccatgtaaaatgtcatgtaaagagcccattgttgcaaactcataagccaatacacggaga 287
Query: 909 gtcccatcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttgacacc 968
||||| ||| |||||||||| | || ||| || | || ||||||||||||||||| |||
Sbjct: 286 gtcccctcaacacagtaacccaccagctcaactatatggtcatgcttcagccttgagacc 227
Query: 969 at 970
||
Sbjct: 226 at 225
>gb|CX651001.1|CX651001 COLD1_49_B02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_49_B02_A029 5', mRNA sequence
Length = 774
Score = 75.8 bits (38), Expect = 4e-012
Identities = 191/242 (78%)
Strand = Plus / Minus
Query: 729 atatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaaccgctatc 788
|||||||||||| ||||||||||||| |||||||| || || ||||| ||||| || ||
Sbjct: 267 atatggggctgcactttctcatgaaggtactcgagaccctttgctgcaccaacagcaatt 208
Query: 789 ttcacacgttgcgaccacgataagactggaccgggttgagcccctttaacccctttcctt 848
||||| | |||| ||| | |||||||| ||||||||||| | || ||||||| |
Sbjct: 207 ttcaccctttgcatccaatccagaactggacctggttgagccccctgcactcctttccgt 148
Query: 849 ccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggagt 908
||||| | || ||||| | || |||||||| || ||||||||||| | || |||||
Sbjct: 147 ccatgtaaaatgtcatgtaaagagcccattgttgcaaactcataagccaatacacggaga 88
Query: 909 gtcccatcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttgacacc 968
||||| ||| |||||||||| | || ||| || | || ||||||||||||||||| |||
Sbjct: 87 gtcccctcaacacagtaacccaccagctcaactatatggtcatgcttcagccttgagacc 28
Query: 969 at 970
||
Sbjct: 27 at 26
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 565 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 506
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 505 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 449
>gb|DN462343.1|DN462343 EST958142 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIL22 5' end, mRNA sequence
Length = 879
Score = 75.8 bits (38), Expect = 4e-012
Identities = 191/242 (78%)
Strand = Plus / Minus
Query: 729 atatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaaccgctatc 788
|||||||||||| ||||||||||||| |||||||| || || ||||| ||||| || ||
Sbjct: 825 atatggggctgcactttctcatgaaggtactcgagaccctttgctgcaccaacagcaatt 766
Query: 789 ttcacacgttgcgaccacgataagactggaccgggttgagcccctttaacccctttcctt 848
||||| | |||| ||| | |||||||| ||||||||||| | || ||||||| |
Sbjct: 765 ttcaccctttgcatccaatccagaactggacctggttgagccccctgcactcctttccgt 706
Query: 849 ccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggagt 908
||||| | || ||||| | || |||||||| || ||||||||||| | || |||||
Sbjct: 705 ccatgtaaaatgtcatgtaaagagcccattgttgcaaactcataagccaatacacggaga 646
Query: 909 gtcccatcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttgacacc 968
||||| ||| |||||||||| | || ||| || | || ||||||||||||||||| |||
Sbjct: 645 gtcccctcaacacagtaacccaccagctcaactatatggtcatgcttcagccttgagacc 586
Query: 969 at 970
||
Sbjct: 585 at 584
>gb|DR055876.1|DR055876 RTCA1_26_B11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_B11_A029 5', mRNA sequence
Length = 289
Score = 75.8 bits (38), Expect = 4e-012
Identities = 164/206 (79%)
Strand = Plus / Minus
Query: 564 gtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagc 623
|||||||| || || || |||||||| || |||||||| || || | ||| || ||||||
Sbjct: 280 gtcatcgcgtattctggagcatggtaaccaaatgttccaagcacacgagtggaatgaagc 221
Query: 624 cgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcg 683
|| || | ||||||||||| |||||| || | |||||| ||||| ||||| ||| || |
Sbjct: 220 cgtgccgacatgtcaggagattggtttgatatatcaaaatcagctatctttgctgtatag 161
Query: 684 tcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgct 743
|| |||||||| | ||| ||||||||||| || || ||||| |||||| | || || ||
Sbjct: 160 tcgtcgaaaagtaagacattgctagacttaatatcccggtgaatgataggcggttgtgcc 101
Query: 744 ttctcatgaagatactcgaggccttt 769
|||||||| || ||||| || |||||
Sbjct: 100 ttctcatggaggtactcaagcccttt 75
>gb|DR176904.1|DR176904 RTMNUT1_1_F02.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_1_F02_A029 5', mRNA sequence
Length = 508
Score = 75.8 bits (38), Expect = 4e-012
Identities = 164/206 (79%)
Strand = Plus / Minus
Query: 564 gtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagc 623
|||||||| || || || |||||||| || |||||||| || || | ||| || ||||||
Sbjct: 443 gtcatcgcgtattctggagcatggtaaccaaatgttccaagcacacgagtggaatgaagc 384
Query: 624 cgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcg 683
|| || | ||||||||||| |||||| || | |||||| ||||| ||||| ||| || |
Sbjct: 383 cgtgccgacatgtcaggagattggtttgatatatcaaaatcagctatctttgctgtatag 324
Query: 684 tcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgct 743
|| |||||||| | ||| ||||||||||| || || ||||| |||||| | || || ||
Sbjct: 323 tcgtcgaaaagtaagacattgctagacttaatatcccggtgaatgataggcggttgtgcc 264
Query: 744 ttctcatgaagatactcgaggccttt 769
|||||||| || ||||| || |||||
Sbjct: 263 ttctcatggaggtactcaagcccttt 238
>gb|DT626859.1|DT626859 EST1159935 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAS19 5' end, mRNA sequence
Length = 951
Score = 75.8 bits (38), Expect = 4e-012
Identities = 191/242 (78%)
Strand = Plus / Minus
Query: 729 atatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaaccgctatc 788
|||||||||||| ||||||||||||| |||||||| || || ||||| ||||| || ||
Sbjct: 825 atatggggctgcactttctcatgaaggtactcgagaccctttgctgcaccaacagcaatt 766
Query: 789 ttcacacgttgcgaccacgataagactggaccgggttgagcccctttaacccctttcctt 848
||||| | |||| ||| | |||||||| ||||||||||| | || ||||||| |
Sbjct: 765 ttcaccctttgcatccaatccagaactggacctggttgagccccctgcactcctttccgt 706
Query: 849 ccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggagt 908
||||| | || ||||| | || |||||||| || ||||||||||| | || |||||
Sbjct: 705 ccatgtaaaatgtcatgtaaagagcccattgttgcaaactcataagccaatacacggaga 646
Query: 909 gtcccatcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttgacacc 968
||||| ||| |||||||||| | || ||| || | || ||||||||||||||||| |||
Sbjct: 645 gtcccctcaacacagtaacccaccagctcaactatatggtcatgcttcagccttgagacc 586
Query: 969 at 970
||
Sbjct: 585 at 584
>gb|BQ699948.1|BQ699948 NXRV132_B07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV132_B07 5' similar to Arabidopsis thaliana
sequence At2g43230 protein kinase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 73.8 bits (37), Expect = 1e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 441 gcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctccca 500
||||| || ||||| || || |||||||| |||| ||||||||| ||||| ||||| ||
Sbjct: 268 gcccaagtaacaaggctttgttgtcccctaggcattgtatggtccacaggcttccttcct 209
Query: 501 gtcaacagctcaagaagaacaaccccaaaactatatacatc 541
||||| || ||||| ||||| |||||||| |||||||||||
Sbjct: 208 gtcaaaagttcaaggagaaccaccccaaagctatatacatc 168
>gb|BQ701997.1|BQ701997 NXSI_123_B05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_123_B05 5' similar to Arabidopsis thaliana
sequence At2g30740 putative protein kinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 406
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 140 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 81
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 80 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 24
>gb|CF385731.1|CF385731 RTDR1_5_C07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_5_C07_A015 5', mRNA
sequence
Length = 697
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 568 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 627
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 628 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 684
>gb|CF391262.1|CF391262 RTDR3_4_D07.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_4_D07_A022 5', mRNA
sequence
Length = 612
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 447 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 388
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 387 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 331
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 729 atatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaac 781
|||||||||||| ||||||||||||| |||||||| || || ||||| |||||
Sbjct: 149 atatggggctgcactttctcatgaaggtactcgagaccctttgctgcaccaac 97
>gb|DN609116.1|DN609116 EST962166 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA877, mRNA sequence
Length = 427
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 326 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 267
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 266 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 210
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 729 atatggggctgcgctttctcatgaag 754
|||||||||||| |||||||||||||
Sbjct: 28 atatggggctgcactttctcatgaag 3
>gb|DN610814.1|DN610814 EST963864 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAU37, mRNA sequence
Length = 614
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 289 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 348
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 349 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 405
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 729 atatggggctgcgctttctcatgaag 754
|||||||||||| |||||||||||||
Sbjct: 587 atatggggctgcactttctcatgaag 612
>gb|DN612637.1|DN612637 EST965687 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABI21, mRNA sequence
Length = 614
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 289 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 348
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 349 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 405
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 729 atatggggctgcgctttctcatgaag 754
|||||||||||| |||||||||||||
Sbjct: 587 atatggggctgcactttctcatgaag 612
>gb|DR020501.1|DR020501 STRS1_37_A04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_A04_A034 5', mRNA sequence
Length = 726
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 353 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 294
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 293 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 237
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 729 atatggggctgcgctttctcatgaagatactcgag 763
|||||||||||| ||||||||||||| ||||||||
Sbjct: 55 atatggggctgcactttctcatgaaggtactcgag 21
>gb|DR180714.1|DR180714 RTMNUT1_34_H07.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_H07_A029 3', mRNA sequence
Length = 804
Score = 73.8 bits (37), Expect = 1e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 431 tcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacagg 490
|||||| || ||||| || ||||||||||| ||||||| |||| ||| || || |||||
Sbjct: 160 tcttggagttgcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacagg 101
Query: 491 tttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
||| || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 100 ttttctacctgtcaggagttcaagtagaactaccccaaagctatatacatcactctt 44
>gb|DN609119.1|DN609119 EST962169 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA880, mRNA sequence
Length = 343
Score = 69.9 bits (35), Expect = 2e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 441 gcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctccca 500
||||| || ||||||||||| ||||||| |||| ||| || || |||||||| || ||
Sbjct: 7 gcccaagtaacaagactctgttgtccccgaggcattgtgtgatctacaggttttctacct 66
Query: 501 gtcaacagctcaagaagaacaaccccaaaactatatacatcactctt 547
|||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 67 gtcaggagttcaagtagaactaccccaaagctatatacatcactctt 113
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 729 atatggggctgcgctttctcatgaag 754
|||||||||||| |||||||||||||
Sbjct: 295 atatggggctgcactttctcatgaag 320
>gb|DR681853.1|DR681853 EST1071928 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA270 3' end, mRNA sequence
Length = 460
Score = 69.9 bits (35), Expect = 2e-010
Identities = 143/179 (79%)
Strand = Plus / Minus
Query: 597 gttccgagaaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacaga 656
||||| ||||| | ||| || ||||| || || ||||||||||||||||| || || |||
Sbjct: 456 gttcccagaacacgagtggaatgaagtcgggcagccatgtcaggagcttgatttgaaaga 397
Query: 657 tcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatg 716
| ||| ||||| || || ||| || ||| || |||||||| || ||| |||| | ||
Sbjct: 396 ttaaaatcagcaattttggctgcaaagtcgtcaaaaagaagaacattggtagatataata 337
Query: 717 tctcggtgtatgatatggggctgcgctttctcatgaagatactcgaggcctttcgctgc 775
|| ||||| |||||||| || || ||||||||||||||||| || || |||||||||||
Sbjct: 336 tcacggtggatgatatgaggttgagctttctcatgaagataatcaagccctttcgctgc 278
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 840 cctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|||||||||||||| | || ||||| | ||||||||| || || |||||||||||
Sbjct: 213 cctttccttccatgtaaaatgtcatgtaaggaacccatagttgcaaactcataagc 158
>gb|BM492145.1|BM492145 NXRV_021_C11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_021_C11 5' similar to Arabidopsis thaliana
sequence At2g47060 putative protein kinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 268
Score = 67.9 bits (34), Expect = 9e-010
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 690 aaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctca 749
|||||||| || |||||||| | || || ||||| |||||||| || || |||||||||
Sbjct: 125 aaaagaagaacattgctagatctaatatcacggtggatgatatgaggttgagctttctca 66
Query: 750 tgaagatactcgaggcctttcgctgc 775
||||||||||| || |||||||||||
Sbjct: 65 tgaagatactcaagccctttcgctgc 40
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,609
Number of Sequences: 355925
Number of extensions: 104609
Number of successful extensions: 27391
Number of sequences better than 0.5: 121
Number of HSP's better than 0.5 without gapping: 119
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27143
Number of HSP's gapped (non-prelim): 227
length of query: 1135
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1116
effective length of database: 210,514,662
effective search space: 234934362792
effective search space used: 234934362792
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)