BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side ... 115 2e-024
gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C fo... 115 2e-024
gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo li... 115 2e-024
gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo li... 115 2e-024
gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciat... 107 5e-022
gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 88... 103 8e-021
gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side ... 103 8e-021
gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for... 103 8e-021
gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus adde... 103 8e-021
gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus adde... 103 8e-021
gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood... 98 5e-019
gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side ... 98 5e-019
gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus cal... 88 5e-016
gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus cal... 88 5e-016
gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side ... 82 3e-014
gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side ... 82 3e-014
gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side ... 82 3e-014
gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root w... 80 1e-013
gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clon... 80 1e-013
gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood... 72 3e-011
gb|DN609444.1|DN609444 EST962494 Subtracted pine embryo lib... 72 3e-011
gb|DN609958.1|DN609958 EST963008 Subtracted pine embryo lib... 72 3e-011
gb|DT627623.1|DT627623 EST1156372 Subtracted pine embryo li... 72 3e-011
gb|DT627893.1|DT627893 EST1156642 Subtracted pine embryo li... 72 3e-011
gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciat... 70 1e-010
gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pin... 70 1e-010
gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciat... 64 7e-009
gb|BX682858.1|BX682858 BX682858 Pinus pinaster differenciat... 56 2e-006
gb|BX683008.1|BX683008 BX683008 Pinus pinaster differenciat... 56 2e-006
gb|DR011315.1|DR011315 HEAT1_5_B01.b1_A029 Root at 37 C for... 54 7e-006
gb|CD017085.1|CD017085 NXCI_068_E12_F NXCI (Nsf Xylem Compr... 52 3e-005
gb|DR014570.1|DR014570 HEAT1_50_G04.b1_A029 Root at 37 C fo... 48 4e-004
gb|DR691205.1|DR691205 EST1081291 Normalized pine embryo li... 40 0.10
gb|DT636467.1|DT636467 EST1151398 Normalized pine embryo li... 40 0.10
gb|CO200374.1|CO200374 GEO2_7_C03.b1_A032 Root gravitropism... 38 0.40
>gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_A08 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 115 bits (58), Expect = 2e-024
Identities = 181/222 (81%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||||||||| |||||
Sbjct: 266 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcaatgagatcaac 207
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||| ||||| ||||| |||||||| | | ||| |||| ||||| ||||| ||
Sbjct: 206 atgagtcataagcatacgcctacagcagtatctcaccaaccccaatgcatcaagagcgtc 147
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||||||||||| || ||||||||||| |||||| || |||||||| ||
Sbjct: 146 cccttcagtatagtcggcctgcagaaggtcgaggtacgtatcccatttattcccaatcac 87
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| |||||||| || || || |||||||||||||| |||||
Sbjct: 86 ctttccgcaggtaaaacaacgaactgggataatcattttcac 45
>gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_G04_A029 5', mRNA sequence
Length = 808
Score = 115 bits (58), Expect = 2e-024
Identities = 181/222 (81%)
Strand = Plus / Plus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||||||||| |||||
Sbjct: 243 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcaatgagatcaac 302
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||| ||||| ||||| |||||||| | | ||| |||| ||||| ||||| ||
Sbjct: 303 atgagtcataagcatacgcctacagcagtatctcaccaaccccaatgcatcaagagcgtc 362
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||||||||||| || ||||||||||| |||||| || |||||||| ||
Sbjct: 363 cccttcagtatagtcggcctgcagaaggtcgaggtacgtatcccatttattcccaatcac 422
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| |||||||| || || || |||||||||||||| |||||
Sbjct: 423 ctttccgcaggtaaaacaacgaactgggataatcattttcac 464
>gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC887 3' end, mRNA sequence
Length = 503
Score = 115 bits (58), Expect = 2e-024
Identities = 181/222 (81%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||||||||| |||||
Sbjct: 226 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcaatgagatcaac 167
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||| ||||| ||||| |||||||| | | ||| |||| ||||| ||||| ||
Sbjct: 166 atgagtcataagcatacgcctacagcagtatctcaccaaccccaatgcatcaagagcgtc 107
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||||||||||| || ||||||||||| |||||| || |||||||| ||
Sbjct: 106 cccttcagtatagtcggcctgcagaaggtcgaggtacgtatcccatttattcccaatcac 47
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| |||||||| || || || |||||||||||||| |||||
Sbjct: 46 ctttccgcaggtaaaacaacgaactgggataatcattttcac 5
>gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG860 3' end, mRNA sequence
Length = 511
Score = 115 bits (58), Expect = 2e-024
Identities = 181/222 (81%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||||||||| |||||
Sbjct: 234 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcaatgagatcaac 175
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||| ||||| ||||| |||||||| | | ||| |||| ||||| ||||| ||
Sbjct: 174 atgagtcataagcatacgcctacagcagtatctcaccaaccccaatgcatcaagagcgtc 115
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||||||||||| || ||||||||||| |||||| || |||||||| ||
Sbjct: 114 cccttcagtatagtcggcctgcagaaggtcgaggtacgtatcccatttattcccaatcac 55
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| |||||||| || || || |||||||||||||| |||||
Sbjct: 54 ctttccgcaggtaaaacaacgaactgggataatcattttcac 13
>gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122E04, mRNA sequence
Length = 615
Score = 107 bits (54), Expect = 5e-022
Identities = 180/222 (81%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||| ||||| |||||
Sbjct: 292 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcgatgagatcaac 233
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||||||||| ||||| |||||||| | | ||| |||| ||||| ||||| ||
Sbjct: 232 atgagtcatgagcatacgcctacagcagtatctcaccaaccccaatgcatcaagagcgtc 173
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||||||||||| || ||||||||||| |||||| || |||||||| ||
Sbjct: 172 cccttcagtatagtcggcctgcagaaggtcgaggtacgtatcccatttattcccaatcac 113
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| |||||||| || || || || ||||||||||| |||||
Sbjct: 112 ctttccgcaggtaaaacatcgaaccgggataatcattttcac 71
>gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 8887r, mRNA sequence
Length = 667
Score = 103 bits (52), Expect = 8e-021
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 214 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 155
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 154 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 95
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 94 ccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttcac 35
>gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_D09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 103 bits (52), Expect = 8e-021
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 216 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 157
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 156 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 97
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 96 ccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttcac 37
>gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B01_A029 5', mRNA sequence
Length = 552
Score = 103 bits (52), Expect = 8e-021
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 198 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 139
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 138 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 79
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 78 ccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttcac 19
>gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 3', mRNA sequence
Length = 550
Score = 103 bits (52), Expect = 8e-021
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 217 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 158
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 157 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 98
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 97 ccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttcac 38
>gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 5', mRNA sequence
Length = 528
Score = 103 bits (52), Expect = 8e-021
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 198 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 139
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 138 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 79
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 78 ccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttcac 19
>gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_157_C09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 316
Score = 97.6 bits (49), Expect = 5e-019
Identities = 147/180 (81%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| || || |||||||| | | ||| |
Sbjct: 206 cttctcgatgagatcaacatgagtcatcagcatacgnctacagcagtatctcaccaaccc 147
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 146 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 87
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 86 ccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttcac 27
>gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_G01 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 97.6 bits (49), Expect = 5e-019
Identities = 178/222 (80%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||||||||| |||||
Sbjct: 249 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcaatgagatcaac 190
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||| ||||| || |||||||| | | ||| |||| ||||| ||||| ||
Sbjct: 189 atgagtcataagcatacgnnnacagcagtatctcaccaaccccaatgcatcaagagcgtc 130
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| | ||||||||||| || ||||||||||| |||||| || |||||||| ||
Sbjct: 129 cccttcagtatagtcggcctgcagaaggtcgaggtacgtatcccatttattcccaatcac 70
Query: 457 cttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| |||||||| || || || |||||||||||||| |||||
Sbjct: 69 ctttccgcaggtaaaacaacgaactgggataatcattttcac 28
>gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 3', mRNA sequence
Length = 769
Score = 87.7 bits (44), Expect = 5e-016
Identities = 146/180 (81%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 225 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 166
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 165 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 106
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||| ||||| | || || ||||||||||| |||||
Sbjct: 105 ccatttattcccaatcacctttccgcaagtgaaaaatcgaacggggataatcattttcac 46
>gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 5', mRNA sequence
Length = 771
Score = 87.7 bits (44), Expect = 5e-016
Identities = 146/180 (81%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 220 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 161
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 160 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 101
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| ||||| ||||| ||||| | || || ||||||||||| |||||
Sbjct: 100 ccatttattcccaatcacctttccgcaagtgaaaaatcgaacggggataatcattttcac 41
>gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_080_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 280
Score = 81.8 bits (41), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 378 ccaaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagat 437
|||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| |
Sbjct: 165 ccaatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgt 106
Query: 438 cccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttca 497
|||| || |||||||| ||||| ||||||||||| || || || ||||||||||| ||||
Sbjct: 105 cccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttca 46
Query: 498 c 498
|
Sbjct: 45 c 45
>gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_090_G07 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 233
Score = 81.8 bits (41), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 378 ccaaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagat 437
|||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| |
Sbjct: 157 ccaatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgt 98
Query: 438 cccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttca 497
|||| || |||||||| ||||| ||||||||||| || || || ||||||||||| ||||
Sbjct: 97 cccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttca 38
Query: 498 c 498
|
Sbjct: 37 c 37
>gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 81.8 bits (41), Expect = 3e-014
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 378 ccaaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagat 437
|||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| |
Sbjct: 138 ccaatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgt 79
Query: 438 cccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttca 497
|||| || |||||||| ||||| ||||||||||| || || || ||||||||||| ||||
Sbjct: 78 cccatttattcccaatcacctttccgcaggtgaaacatcgaacggggataatcattttca 19
Query: 498 c 498
|
Sbjct: 18 c 18
>gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_H06 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 79.8 bits (40), Expect = 1e-013
Identities = 146/180 (81%), Gaps = 1/180 (0%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||| | |||||||| | | ||| |
Sbjct: 241 cttctcgatgagatcaacatgagtcatcagcatacgcatacagcagtatctcaccaaccc 182
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||||| ||
Sbjct: 181 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtatgtgtc 122
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||| || |||||||| | ||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 121 ccatttattcccaatca-ctttccgcaggtgaaacatcgaacggggataatcattttcac 63
>gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clone RN63C03, mRNA sequence
Length = 595
Score = 79.8 bits (40), Expect = 1e-013
Identities = 127/156 (81%)
Strand = Plus / Minus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||| ||||| |||||
Sbjct: 231 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcgatgagatcaac 172
Query: 337 atgtgtcatgagcattcgcctgcagcagtagcggaacaattccaaagcatccagagcatc 396
||| ||||||||||| ||||| |||||||| | | ||| |||| ||||| ||||| ||
Sbjct: 171 atgagtcatgagcatacgcctacagcagtatctcaccaaccccaatgcatcaagagcgtc 112
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggta 432
|||||| | ||||||||||| || |||||||||||
Sbjct: 111 cccttcagtatagtcggcctgcagaaggtcgaggta 76
>gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_158_B04 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 160
Score = 71.9 bits (36), Expect = 3e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcag 466
||||||||||| || |||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 111 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 52
Query: 467 gtgaagcagcgcactgggataatcatcttcac 498
||||| || || || ||||||||||| |||||
Sbjct: 51 gtgaaacatcgaacggggataatcattttcac 20
>gb|DN609444.1|DN609444 EST962494 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAC94, mRNA sequence
Length = 477
Score = 71.9 bits (36), Expect = 3e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcag 466
||||||||||| || |||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 318 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 377
Query: 467 gtgaagcagcgcactgggataatcatcttcac 498
||||| || || || ||||||||||| |||||
Sbjct: 378 gtgaaacatcgaacggggataatcattttcac 409
>gb|DN609958.1|DN609958 EST963008 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAJ67, mRNA sequence
Length = 477
Score = 71.9 bits (36), Expect = 3e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcag 466
||||||||||| || |||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 318 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 377
Query: 467 gtgaagcagcgcactgggataatcatcttcac 498
||||| || || || ||||||||||| |||||
Sbjct: 378 gtgaaacatcgaacggggataatcattttcac 409
>gb|DT627623.1|DT627623 EST1156372 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCO70 5' end, mRNA sequence
Length = 477
Score = 71.9 bits (36), Expect = 3e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcag 466
||||||||||| || |||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 160 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 101
Query: 467 gtgaagcagcgcactgggataatcatcttcac 498
||||| || || || ||||||||||| |||||
Sbjct: 100 gtgaaacatcgaacggggataatcattttcac 69
>gb|DT627893.1|DT627893 EST1156642 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCR88 5' end, mRNA sequence
Length = 477
Score = 71.9 bits (36), Expect = 3e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcag 466
||||||||||| || |||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 160 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttccgcag 101
Query: 467 gtgaagcagcgcactgggataatcatcttcac 498
||||| || || || ||||||||||| |||||
Sbjct: 100 gtgaaacatcgaacggggataatcattttcac 69
>gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048G01 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 477
Score = 69.9 bits (35), Expect = 1e-010
Identities = 95/115 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 128 cttctcgatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 69
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtat 433
||| ||||| ||||| |||||||| | ||||||||||| || ||||||||||||
Sbjct: 68 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtat 14
>gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_F04_A029 3', mRNA sequence
Length = 840
Score = 69.9 bits (35), Expect = 1e-010
Identities = 95/115 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 514 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 455
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtat 433
||| ||||| ||||| |||||||| | ||||||||||| || ||||||||||||
Sbjct: 454 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgaggtat 400
>gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035A03 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 466
Score = 63.9 bits (32), Expect = 7e-009
Identities = 92/112 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 112 cttctcgatgagatcaacatgagtcataagcatacgcctacagcagtatctcaccaaccc 53
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgagg 430
||| ||||| ||||| |||||||| | ||||||||||| || |||||||||
Sbjct: 52 caatgcatcaagagcgtccccttcagtatagtcggcctgcagaaggtcgagg 1
>gb|BX682858.1|BX682858 BX682858 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122G09 similar to DNA-directed RNA polymerase
II, mRNA sequence
Length = 633
Score = 56.0 bits (28), Expect = 2e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||| ||||| |||||
Sbjct: 443 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcgatgagatcaac 502
Query: 337 atgtgtcatgagcattcgcctgcagcag 364
||| ||||||||||| ||||| ||||||
Sbjct: 503 atgagtcatgagcatacgcctacagcag 530
>gb|BX683008.1|BX683008 BX683008 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126H09 similar to DNA-directed RNA polymerase
II, mRNA sequence
Length = 631
Score = 56.0 bits (28), Expect = 2e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 277 ttaacttgtctcggtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaac 336
||||||||| ||| || |||||| |||||||| || | | |||||| ||||| |||||
Sbjct: 444 ttaacttgtttcgctcctctctaaagtgttgtaattcaaaagcttctcgatgagatcaac 503
Query: 337 atgtgtcatgagcattcgcctgcagcag 364
||| ||||||||||| ||||| ||||||
Sbjct: 504 atgagtcatgagcatacgcctacagcag 531
>gb|DR011315.1|DR011315 HEAT1_5_B01.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B01_A029 3', mRNA sequence
Length = 426
Score = 54.0 bits (27), Expect = 7e-006
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| ||||| |||||||| ||||| ||||| ||||| |||||||| | | ||| |
Sbjct: 100 cttctcgatgagatcaacatgagtcatcagcatacgcctacagcagtatctcaccaaccc 41
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctg 417
||| ||||| ||||| |||||||| | |||||||||||
Sbjct: 40 caatgcatcaagagcgtccccttcagtatagtcggcctg 2
>gb|CD017085.1|CD017085 NXCI_068_E12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_068_E12 5' similar to Arabidopsis
thaliana sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 157
Score = 52.0 bits (26), Expect = 3e-005
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcag 466
||||||||||| || |||||||||||| ||||| || |||||||| ||||| | |||
Sbjct: 112 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacctttcnncag 53
Query: 467 gtgaagcagcgcactgggataatcatcttcac 498
|||| || || || ||||||||||| |||||
Sbjct: 52 atgaaacatcgaacggggataatcattttcac 21
>gb|DR014570.1|DR014570 HEAT1_50_G04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_G04_A029 3', mRNA sequence
Length = 809
Score = 48.1 bits (24), Expect = 4e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 447 tcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||||||| ||||| |||||||| || || || |||||||||||||| |||||
Sbjct: 1 tcccaatcacctttccgcaggtaaaacaacgaactgggataatcattttcac 52
>gb|DR691205.1|DR691205 EST1081291 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD551 3' end, mRNA sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.10
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
||||||||||| || |||||||||||| ||||| || |||||||| ||||
Sbjct: 376 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacct 325
Score = 40.1 bits (20), Expect = 0.10
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 455 accttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 192 acctttccgcaggtgaaacatcgaacggggataatcattttcac 149
>gb|DT636467.1|DT636467 EST1151398 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGS19 3' end, mRNA sequence
Length = 846
Score = 40.1 bits (20), Expect = 0.10
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 407 tagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
||||||||||| || |||||||||||| ||||| || |||||||| ||||
Sbjct: 384 tagtcggcctgcagaaggtcgaggtatgtgtcccatttattcccaatcacct 333
Score = 40.1 bits (20), Expect = 0.10
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 455 accttgccgcaggtgaagcagcgcactgggataatcatcttcac 498
||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 200 acctttccgcaggtgaaacatcgaacggggataatcattttcac 157
>gb|CO200374.1|CO200374 GEO2_7_C03.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_C03_A032 3', mRNA sequence
Length = 706
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 182 cacaacccatttctactga 200
|||||||||||||||||||
Sbjct: 681 cacaacccatttctactga 663
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,394
Number of Sequences: 355925
Number of extensions: 63394
Number of successful extensions: 17084
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17040
Number of HSP's gapped (non-prelim): 37
length of query: 605
length of database: 217,277,237
effective HSP length: 19
effective length of query: 586
effective length of database: 210,514,662
effective search space: 123361591932
effective search space used: 123361591932
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)