BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437779.2.1
(3727 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 339 5e-091
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 307 2e-081
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 291 1e-076
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 266 6e-069
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 258 1e-066
dbj|BD236020.1| Materials and method for modification of pl... 248 1e-063
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 248 1e-063
gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 ... 214 2e-053
gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus pota... 214 2e-053
gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late w... 206 5e-051
gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo li... 172 7e-041
gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch... 163 6e-038
gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compr... 159 1e-036
gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control P... 157 4e-036
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 157 4e-036
gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulf... 157 4e-036
dbj|BD235989.1| Materials and method for modification of pl... 157 4e-036
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 157 4e-036
gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compr... 151 2e-034
gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciat... 151 2e-034
gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Plani... 149 1e-033
gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood... 147 4e-033
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 145 2e-032
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 141 2e-031
gb|BQ701215.1|BQ701215 NXSI_023_H05_F NXSI (Nsf Xylem Side ... 137 4e-030
gb|AA556640.1|AA556640 495 Loblolly pine C Pinus taeda cDNA... 135 1e-029
gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered lo... 133 6e-029
gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clon... 129 9e-028
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 129 9e-028
gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDN... 127 4e-027
gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Plani... 123 6e-026
gb|BV079715.1| Pp_CesA3 Pinus pinaster megagametophytes Pin... 121 2e-025
gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side ... 117 3e-024
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 117 3e-024
gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus mag... 115 1e-023
gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood... 113 5e-023
gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control P... 111 2e-022
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 111 2e-022
gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus ... 109 8e-022
gb|DN609460.1|DN609460 EST962510 Subtracted pine embryo lib... 109 8e-022
gb|DT627755.1|DT627755 EST1156504 Subtracted pine embryo li... 109 8e-022
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 103 5e-020
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 98 3e-018
gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciat... 94 5e-017
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 94 5e-017
gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus ad... 94 5e-017
gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus adde... 94 5e-017
dbj|BD235986.1| Materials and method for modification of pl... 94 5e-017
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 94 5e-017
gb|AY764673.1|AY764673S1 Pinus taeda isolate 11 cellulose s... 94 5e-017
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 94 5e-017
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 94 5e-017
gb|AY764675.1|AY764675S1 Pinus taeda isolate 16 cellulose s... 94 5e-017
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 94 5e-017
gb|AY764677.1|AY764677S1 Pinus taeda isolate 25 cellulose s... 94 5e-017
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 94 5e-017
gb|AY764679.1|AY764679S1 Pinus taeda isolate 7 cellulose sy... 94 5e-017
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 94 5e-017
gb|AY764681.1|AY764681S1 Pinus taeda isolate 6 cellulose sy... 94 5e-017
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 94 5e-017
gb|AY764683.1|AY764683S1 Pinus taeda isolate 4 cellulose sy... 94 5e-017
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 94 5e-017
gb|AY764685.1|AY764685S1 Pinus taeda isolate 26 cellulose s... 94 5e-017
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 94 5e-017
gb|AY764687.1|AY764687S1 Pinus taeda isolate 9 cellulose sy... 94 5e-017
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 94 5e-017
gb|AY764689.1|AY764689S1 Pinus taeda isolate 23 cellulose s... 94 5e-017
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 94 5e-017
gb|AY764691.1|AY764691S1 Pinus taeda isolate 13 cellulose s... 94 5e-017
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 94 5e-017
gb|AY764693.1|AY764693S1 Pinus taeda isolate 30 cellulose s... 94 5e-017
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 94 5e-017
gb|AY764695.1|AY764695S1 Pinus taeda isolate 22 cellulose s... 94 5e-017
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 94 5e-017
gb|AY764697.1|AY764697S1 Pinus taeda isolate 32 cellulose s... 94 5e-017
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 94 5e-017
gb|AY764699.1|AY764699S1 Pinus taeda isolate 18 cellulose s... 94 5e-017
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 94 5e-017
gb|AY764701.1|AY764701S1 Pinus taeda isolate 10 cellulose s... 94 5e-017
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 94 5e-017
gb|AY764703.1|AY764703S1 Pinus taeda isolate 14 cellulose s... 94 5e-017
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 94 5e-017
gb|AY764705.1|AY764705S1 Pinus taeda isolate 21 cellulose s... 94 5e-017
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 94 5e-017
gb|AY764707.1|AY764707S1 Pinus taeda isolate 31 cellulose s... 94 5e-017
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 94 5e-017
gb|AY764709.1|AY764709S1 Pinus taeda isolate 5 cellulose sy... 94 5e-017
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 94 5e-017
gb|AY764711.1|AY764711S1 Pinus taeda isolate 2 cellulose sy... 94 5e-017
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 94 5e-017
gb|AY764713.1|AY764713S1 Pinus taeda isolate 3 cellulose sy... 94 5e-017
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 94 5e-017
gb|AY764715.1|AY764715S1 Pinus taeda isolate 19 cellulose s... 94 5e-017
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 94 5e-017
gb|AY764717.1|AY764717S1 Pinus taeda isolate 28 cellulose s... 94 5e-017
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 94 5e-017
gb|AY764719.1|AY764719S1 Pinus taeda isolate 17 cellulose s... 94 5e-017
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 94 5e-017
gb|AY764721.1|AY764721S1 Pinus taeda isolate 8 cellulose sy... 94 5e-017
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 94 5e-017
gb|AY764723.1|AY764723S1 Pinus taeda isolate 15 cellulose s... 94 5e-017
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 94 5e-017
gb|AY764725.1|AY764725S1 Pinus taeda isolate 1 cellulose sy... 94 5e-017
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 94 5e-017
gb|AY764727.1|AY764727S1 Pinus taeda isolate 29 cellulose s... 94 5e-017
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 94 5e-017
gb|AY764729.1|AY764729S1 Pinus taeda isolate 20 cellulose s... 94 5e-017
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 94 5e-017
gb|AY764731.1|AY764731S1 Pinus taeda isolate 27 cellulose s... 94 5e-017
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 94 5e-017
gb|AY764733.1|AY764733S1 Pinus taeda isolate 12 cellulose s... 94 5e-017
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 94 5e-017
gb|AY764735.1|AY764735S1 Pinus taeda isolate 24 cellulose s... 94 5e-017
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 94 5e-017
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 94 5e-017
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 92 2e-016
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 92 2e-016
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 92 2e-016
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 92 2e-016
gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered lo... 92 2e-016
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 92 2e-016
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 92 2e-016
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 92 2e-016
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 92 2e-016
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 92 2e-016
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 92 2e-016
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 92 2e-016
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 92 2e-016
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 92 2e-016
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 92 2e-016
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 92 2e-016
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 92 2e-016
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 92 2e-016
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 92 2e-016
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 92 2e-016
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 92 2e-016
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 92 2e-016
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 92 2e-016
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 92 2e-016
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 92 2e-016
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 92 2e-016
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 92 2e-016
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 92 2e-016
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 92 2e-016
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 92 2e-016
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 92 2e-016
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 92 2e-016
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 92 2e-016
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 92 2e-016
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 92 2e-016
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 92 2e-016
gb|BF778216.1|BF778216 NXSI_083_G10_F NXSI (Nsf Xylem Side ... 90 8e-016
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 90 8e-016
gb|DR162195.1|DR162195 RTFE1_16_G12.b1_A029 Roots minus iro... 90 8e-016
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 88 3e-015
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 88 3e-015
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 88 3e-015
gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine r... 88 3e-015
gb|AW985306.1|AW985306 NXNV_135_F04_F Nsf Xylem Normal wood... 86 1e-014
gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root w... 86 1e-014
gb|BF169757.1|BF169757 NXCI_128_G07_F NXCI (Nsf Xylem Compr... 84 5e-014
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 84 5e-014
gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root w... 80 7e-013
gb|CD017587.1|CD017587 NXCI_129_A12_F NXCI (Nsf Xylem Compr... 78 3e-012
gb|CD016846.1|CD016846 NXCI_064_H04_F NXCI (Nsf Xylem Compr... 76 1e-011
gb|BE996842.1|BE996842 NXCI_103_B03_F NXCI (Nsf Xylem Compr... 72 2e-010
gb|CD022200.1|CD022200 NXPV_024_F02_F NXPV (Nsf Xylem Plani... 72 2e-010
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 70 7e-010
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 70 7e-010
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 66 1e-008
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 66 1e-008
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 66 1e-008
gb|BV102457.1| AY531556.SNP2 Pinus pinaster megagametophyte... 66 1e-008
gb|AY531556.1| Pinus pinaster putative cellulose synthase g... 66 1e-008
gb|AW010875.1|AW010875 ST12E01 Pine TriplEx shoot tip libra... 64 4e-008
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 64 4e-008
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 64 4e-008
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 64 4e-008
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 64 4e-008
gb|BF169694.1|BF169694 NXCI_126_F04_F NXCI (Nsf Xylem Compr... 64 4e-008
gb|BF609760.1|BF609760 NXSI_050_B03_F NXSI (Nsf Xylem Side ... 64 4e-008
gb|BG832808.1|BG832808 NXPV_080_C10_F NXPV (Nsf Xylem Plani... 64 4e-008
gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered lob... 64 4e-008
gb|CF666027.1|CF666027 RTCNT1_20_E07.b1_A029 Root control P... 64 4e-008
gb|CF668221.1|CF668221 RTCNT1_35_D11.b1_A029 Root control P... 64 4e-008
gb|CF672816.1|CF672816 RTCNT1_74_D05.b1_A029 Root control P... 64 4e-008
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 64 4e-008
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 64 4e-008
gb|DR101934.1|DR101934 STRR1_76_G04.g1_A033 Stem Response R... 64 4e-008
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 64 4e-008
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 64 4e-008
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 64 4e-008
gb|BE431393.1|BE431393 NXNV_181_F12_F Nsf Xylem Normal wood... 62 2e-007
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 62 2e-007
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 62 2e-007
gb|AW870284.1|AW870284 NXNV_128_H04_F Nsf Xylem Normal wood... 60 7e-007
gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood... 60 7e-007
gb|BE643725.1|BE643725 NXCI_043_H03_F NXCI (Nsf Xylem Compr... 60 7e-007
gb|BF610612.1|BF610612 NXSI_060_G02_F NXSI (Nsf Xylem Side ... 60 7e-007
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 58 3e-006
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 58 3e-006
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 58 3e-006
gb|BF777661.1|BF777661 NXSI_073_C10_F NXSI (Nsf Xylem Side ... 58 3e-006
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 58 3e-006
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 58 3e-006
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 56 1e-005
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 56 1e-005
gb|BG275715.1|BG275715 NXSI_145_B01_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BG275945.1|BG275945 NXSI_149_G12_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BM428045.1|BM428045 NXRV_008_A09_F NXRV (Nsf Xylem Root ... 56 1e-005
gb|CD021726.1|CD021726 NXNV_159_F12_F Nsf Xylem Normal wood... 56 1e-005
gb|CD024597.1|CD024597 NXRV056_C03_F NXRV (Nsf Xylem Root w... 56 1e-005
gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA... 54 4e-005
gb|BE209216.1|BE209216 NXNV_147_D10_F Nsf Xylem Normal wood... 54 4e-005
gb|BE643804.1|BE643804 NXCI_047_D12_F NXCI (Nsf Xylem Compr... 54 4e-005
gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root w... 54 4e-005
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 54 4e-005
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 54 4e-005
gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response R... 54 4e-005
gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library P... 52 2e-004
gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood... 52 2e-004
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 52 2e-004
gb|BE451860.1|BE451860 NXCI_004_B09_F NXCI (Nsf Xylem Compr... 52 2e-004
gb|BF010934.1|BF010934 NXCI_094_H06_F NXCI (Nsf Xylem Compr... 52 2e-004
gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BF778225.1|BF778225 NXSI_083_H07_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control P... 52 2e-004
gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus pota... 52 2e-004
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 50 7e-004
gb|BX250396.1|BX250396 BX250396 Pinus pinaster differenciat... 50 7e-004
gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compr... 50 7e-004
gb|BE656835.1|BE656835 NXCI_040_B06_F NXCI (Nsf Xylem Compr... 50 7e-004
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 50 7e-004
gb|BQ696934.1|BQ696934 NXPV_047_A09_F NXPV (Nsf Xylem Plani... 50 7e-004
gb|BQ701506.1|BQ701506 NXSI_065_D05_F NXSI (Nsf Xylem Side ... 50 7e-004
gb|CD017522.1|CD017522 NXCI_124_B01_F NXCI (Nsf Xylem Compr... 50 7e-004
gb|CD020015.1|CD020015 NXNV017A03 Nsf Xylem Normal wood Ver... 50 7e-004
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 50 7e-004
gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip libra... 48 0.003
gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip libra... 48 0.003
gb|AW290811.1|AW290811 NXNV047B05F Nsf Xylem Normal wood Ve... 48 0.003
gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciat... 48 0.003
gb|AW698302.1|AW698302 NXNV_071_E11_F Nsf Xylem Normal wood... 48 0.003
gb|AW784057.1|AW784057 NXNV_117_B10_F Nsf Xylem Normal wood... 48 0.003
gb|BE457983.1|BE457983 NXCI_008_H12_F NXCI (Nsf Xylem Compr... 48 0.003
gb|BF220717.1|BF220717 NXCI_149_G02_F NXCI (Nsf Xylem Compr... 48 0.003
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 48 0.003
gb|CD025512.1|CD025512 NXSI_059_C11_F NXSI (Nsf Xylem Side ... 48 0.003
gb|CD027470.1|CD027470 NXNV047B05 Nsf Xylem Normal wood Ver... 48 0.003
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 48 0.003
gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pin... 48 0.003
gb|AW056552.1|AW056552 ST51E06 Pine TriplEx shoot tip libra... 46 0.010
gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compr... 46 0.010
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 46 0.010
gb|BG832804.1|BG832804 NXPV_080_B12_F NXPV (Nsf Xylem Plani... 46 0.010
gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus mag... 46 0.010
gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iro... 46 0.010
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 46 0.010
gb|BV079717.1| Pp_CesA7 Pinus pinaster megagametophytes Pin... 46 0.010
gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clon... 44 0.041
gb|BE123803.1|BE123803 NXNV_156_F02_F Nsf Xylem Normal wood... 44 0.041
gb|BF516900.1|BF516900 NXSI_005_C02_F NXSI (Nsf Xylem Side ... 44 0.041
gb|BQ654688.1|BQ654688 NXRV084_D02_F NXRV (Nsf Xylem Root w... 44 0.041
gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root ... 44 0.041
gb|AA566934.1|AA566934 988 Loblolly pine CA Pinus taeda cDN... 42 0.16
gb|AW289623.1|AW289623 NXNV003H02F Nsf Xylem Normal wood Ve... 42 0.16
gb|BX255611.1|BX255611 BX255611 Pinus pinaster differenciat... 42 0.16
gb|CD028231.1|CD028231 NXNV003H02 Nsf Xylem Normal wood Ver... 42 0.16
gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stresse... 42 0.16
dbj|BD236021.1| Materials and method for modification of pl... 42 0.16
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 339 bits (171), Expect = 5e-091
Identities = 663/827 (80%)
Strand = Plus / Minus
Query: 1661 gcatatcggtcattcctatcaataccatcaaacctctgaggaaattggacataacagaca 1720
||||| || |||||||||||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct: 1775 gcataccgatcattcctatcaataccatcaaacctttgaggaaactggacgtaacaaaca 1716
Query: 1721 ttccttcctaggtttgggtccataaggaagcacatagcttctcgaagagccttgctatta 1780
| | || || || || ||||| | || ||||| || || || || ||||| ||||||
Sbjct: 1715 gacttcccaagattaggatccatcataaaacacatggcctcacgcagcgccttactatta 1656
Query: 1781 ttgatgtagtggtcacagtcaagattcaacatgtattgcccattagtaaggacagctgat 1840
|| || ||||| ||||| || || ||||||| || ||||| || || || |||||
Sbjct: 1655 tttatatagtgatcacaatcgaggttcaacagataagatccatttgtgagtactgctgaa 1596
Query: 1841 acacgaacaagtgcattcatggcaccagccttcttgtgatgttggaatccaggacgtttt 1900
||||| || | || |||||| ||||| || |||||||| |||||||| ||||| | |||
Sbjct: 1595 acacggaccaatgaattcatagcaccggctttcttgtggtgttggaagccaggcctcttt 1536
Query: 1901 tcacgagacacataaaccaaacgaggaagttcattgccttcaacgtcaagccctccactg 1960
|||||||||||||| || | ||| || ||||||||||||||| || | ||||||||||
Sbjct: 1535 tcacgagacacatagactagacgtggtagttcattgccttcagtatccatccctccactg 1476
Query: 1961 tgacccaggaaaacctgaatcattccaggatggtccctagtattgttcccaggccaaggt 2020
|| || | || ||||| ||||| |||||||||||||| ||||| || |||||||| ||
Sbjct: 1475 tgtcctaaaaacacctgtatcatcccaggatggtccctggtattatttccaggccaggga 1416
Query: 2021 gtaccatcttgcatgatccatccctcctcgggaactttttgtgcattggctacaagacca 2080
|| ||||||||||| | ||| ||||| || || || || || || || || ||||| ||
Sbjct: 1415 gtgccatcttgcataacccagccctcttcaggtaccttctgggccttcgcaacaagcgca 1356
Query: 2081 ttgatacgaactttgaattcttcatattctctcttcatggcccggcgttctttcacaaat 2140
||||| ||||| |||||||||||||||||||||||||| |||| || ||||| |||||
Sbjct: 1355 ttgatccgaaccttgaattcttcatattctctcttcattgccctccgctcttttacaaaa 1296
Query: 2141 gaagtttgaactttgtctttcaagtaatcaattttctgagcaaagtaccattccggagcc 2200
| || || |||||||| ||||||||||| |||||| | | |||||||| || |||||
Sbjct: 1295 gtaggctgtactttgtccttcaagtaatccattttcagtgagaagtaccactctggagct 1236
Query: 2201 ctaggctctatgttgtacttcttacagaacggaacccattttctagcaaactctgaagtt 2260
|| || || ||||| |||| || || || || |||||||| || ||||| |||||||||
Sbjct: 1235 ctgggttcaatgttaaactttttgcaaaatggcacccatttccttgcaaattctgaagtt 1176
Query: 2261 tcagagagagcatcaaaagtcagcatagcagctccatcatccgaaacatagcaagatacc 2320
|| || || | || ||||||| ||| || |||||||| || ||||||||||| || |||
Sbjct: 1175 tctgaaagggattcgaaagtcaacatggctgctccatcgtcagaaacatagcaggaaacc 1116
Query: 2321 ttgtcaaccggataatcgacagcaaggatggaaagcacagtatttgcagtgacaagagga 2380
|||||||| |||||||| |||| || || || || ||||| |||||||| |||||||||
Sbjct: 1115 ttgtcaacaggataatccacagacagaatcgacagaacagtgtttgcagtaacaagagga 1056
Query: 2381 ggctccttcataggatccacagtactgacaaagatatcaacaggagctaattgagatggt 2440
|||||||| | ||| || || ||||||||||| || |||| || ||| || || ||||||
Sbjct: 1055 ggctcctttaaagggtcaactgtactgacaaaaatgtcaatagcagccaactgtgatggt 996
Query: 2441 tcaccttctcggtcataccttaaagccagtctatcaaggtatgtttc 2487
||||||||||||||||| || ||||| || || ||||||||||||||
Sbjct: 995 tcaccttctcggtcatatctcaaagcaagcctgtcaaggtatgtttc 949
Score = 167 bits (84), Expect = 4e-039
Identities = 333/416 (80%)
Strand = Plus / Minus
Query: 824 ctaatctttgggatgatgaacttcccagtgagaagacaaactgctggcaatatgcagtac 883
||||||| ||| || || |||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 2621 ctaatctgtggtataataaacttcccagtgagaagacaaatagctggcaatgtgcaataa 2562
Query: 884 aggaggagcgggattgatgtgagtggataaattgttgtgttgatataagcaaatctctcc 943
| | | ||||| || |||| ||||||| ||| ||||| || || || | ||||||
Sbjct: 2561 accaccaaagggatagaagtgatgggataaactgtagtgtttatgtatgctagcctctcc 2502
Query: 944 aggaatttaagccgacctccatagccataccatatgggacaatgcctgctgaaaagaatt 1003
|| |||| |||| || ||||| |||||||| || || ||||| | ||||| |||||||
Sbjct: 2501 agccatttcagccttccaccataaccataccaaattgggcaatgacggctgagaagaatt 2442
Query: 1004 tcaatggaaccaagagcccaccgaagcacttgattcaaacgatccgaaaggttgatagga 1063
|||| ||||| | ||||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 2441 tcaacagaacccaatgcccatcgaagtacttggttcaaacgatcagaaagatttatagga 2382
Query: 1064 gcagatcccttgaaagctggtcgcttaggcatgcagtagattgatcgccagcctcgagca 1123
||||| || ||||| || || || |||||||||||| || |||| |||||| ||||||
Sbjct: 2381 gcagaccctttgaatgcagggcgaggaggcatgcagtaaatggatctccagccacgagca 2322
Query: 1124 tgcatcttgaatccggtgagaatgtcttctgtaacagaaccatagatccacccaatctca 1183
||||| || ||||| || | ||| ||||| || || |||||||| ||||| |||||||||
Sbjct: 2321 tgcattttaaatccagttaaaatatcttccgtcactgaaccataaatccaaccaatctca 2262
Query: 1184 gttccccagtcagttttgtcctcatagccacagctgatgacatgaatagcttcttt 1239
||||||||| || ||||| ||||| |||||||| || ||||| |||||||||||
Sbjct: 2261 cgtccccagtctgtcttgtcttcatacccacagctaataacatggatagcttcttt 2206
Score = 89.7 bits (45), Expect = 8e-016
Identities = 114/137 (83%)
Strand = Plus / Minus
Query: 617 gtgacagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggca 676
|||||||||||| | ||||| ||||| ||||| || ||||| | ||||||| ||| |||
Sbjct: 2828 gtgacagtgaagtttgtgtcaataccggcaaggactttcagcaacccctggacgactgca 2769
Query: 677 aataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatca 736
|| | ||| || || | ||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 2768 aagagatgagctgacacacctccaatgacccagaattgttcattcctccaccattcatca 2709
Query: 737 atgccaacaccactcca 753
|| ||||| ||||||||
Sbjct: 2708 ataccaaccccactcca 2692
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 1319 ccaaatctcttctccaagctcatttgagacataatcagcgatttctcatcatcaaactga 1378
|||||||| ||||| |||||| | |||||||| | ||| |||||||||||||||||
Sbjct: 2126 ccaaatcttttctctaagctcttctgagacatgagcagagatttctcatcatcaaatcct 2067
Query: 1379 gaaccttcaatcccttcctctatatcttcgagatt 1413
| |||||||| ||||| ||||||||||| |||||
Sbjct: 2066 gcaccttcaacgccttcttctatatcttccagatt 2032
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 2651 accattctgtacggatttattctggatgaaggaattggcacttttctagatagaggttgc 2710
|||||||| || ||||| || |||| |||||||| | ||| |||||||| ||||||||
Sbjct: 785 accattctatatggattgatcttggaagaaggaatggacacctttctagagagaggttga 726
Query: 2711 cgagtttcatcattca 2726
|||| |||||||||||
Sbjct: 725 cgagcttcatcattca 710
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 401 aggaaggggtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaaagaggt 460
||||| ||||| || |||||||||||||| |||||||| ||||| || ||||| || ||
Sbjct: 3044 aggaaagggtaaagatggacaatcacccaaaacgcaaaaaagagttttccgaacagggga 2985
Query: 461 ccccatg 467
|||||||
Sbjct: 2984 ccccatg 2978
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 307 bits (155), Expect = 2e-081
Identities = 767/971 (78%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
|||||||||||||| || ||||||||||| ||||| |||||| ||| ||| ||||| ||
Sbjct: 2089 ccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatcaaag 2030
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagga 1702
|| || ||||| | || || || |||||||| | |||||||||||| || ||||||||
Sbjct: 2029 aatacggtgtttcgattggcgtaacggtcattgcgatcaataccatcgaatctctgaggg 1970
Query: 1703 aattggacataacagacattccttcctaggtttgggtccataaggaagcacatagcttct 1762
||||||||||||||||| || || || | | || ||||| | |||||||| |||||
Sbjct: 1969 aattggacataacagacttttctcccaacctgaggatccatcataaagcacatggcttcc 1910
Query: 1763 cgaagagccttgctattattgatgtagtggtcacagtcaagattcaacatgtattgccca 1822
| | |||||||| || || |||||||| ||||| || ||||||| ||| || | ||
Sbjct: 1909 ctgattgccttgctgttgttaatgtagtgatcacaatccagattcagcataaatggagca 1850
Query: 1823 ttagtaaggacagctgatacacgaacaagtgcattcatggcaccagccttcttgtgatgt 1882
|| || || ||||| || || ||||| | |||||||||||||| ||||||||||||||
Sbjct: 1849 ttggtgagcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtgatgc 1790
Query: 1883 tggaatccaggacgtttttcacgagacacataaaccaaacgaggaagttcattgccttca 1942
||||| ||||| | || |||||||| ||||| || | |||||||| |||||||||||
Sbjct: 1789 tggaaaccaggtctcttctcacgagaaacatatactagccgaggaagctcattgccttct 1730
Query: 1943 acgtcaagccctccactgtgacccaggaaaacctgaatcattccaggatggtccctagta 2002
|| || || ||||||||||||| ||| || || ||||| ||||||||||| | |||
Sbjct: 1729 gtatcgaggccgccactgtgacccaagaacacttggatcataccaggatggtcacgggta 1670
Query: 2003 ttgttcccaggccaaggtgtaccatcttgcatgatccatccctcctcgggaactttttgt 2062
|| || ||||||||||| ||||| |||||||| ||||||| |||| ||| |||||
Sbjct: 1669 ttattaccaggccaaggcgtaccgtcttgcattgtccatccttccttgggcactttagag 1610
Query: 2063 gcattggctacaagaccattgatacgaactttgaattcttcatattctctcttcatggcc 2122
|| || || || | | |||||| || || ||||||||||||||||||||||||||||||
Sbjct: 1609 gcctttgcaaccaaccgattgatgcgcaccttgaattcttcatattctctcttcatggcc 1550
Query: 2123 cggcgttctttcacaaatgaagtttgaactttgtctttcaagtaatcaattttctgagca 2182
||||| ||||| ||||| | | ||||| |||||| |||| || |||||||||||||
Sbjct: 1549 cggcgctctttgacaaaggtgggttgaaatttgtccttcagatagtcaattttctgagag 1490
Query: 2183 aagtaccattccggagccctaggctctatgttgtacttcttacagaacggaacccatttt 2242
|| || ||| ||||| | |||||| |||| | | ||||| ||||| || |||||||||
Sbjct: 1489 aaatagatttcgggagcgcgaggctcaatgtcgaatttcttgcagaatggtacccatttt 1430
Query: 2243 ctagcaaactctgaagtttcagagagagcatcaaaagtcagcatagcagctccatcatcc 2302
|| ||||| ||||| || |||||||||| |||||||| ||||| | ||||| |||||
Sbjct: 1429 ctggcaaattctgaggtctcagagagagattcaaaagtaagcatcgacgctccgtcatca 1370
Query: 2303 gaaacatagcaagataccttgtcaaccggataatcgacagcaaggatggaaagcacagta 2362
|| ||||| || || || ||||| || || || || || | |||||| || | || |||
Sbjct: 1369 gagacataacaggacacattgtctacagggtagtctactgaaaggattgataatactgta 1310
Query: 2363 tttgcagtgacaagaggaggctccttcataggatccacagtactgacaaagatatcaaca 2422
|| ||||| || | |||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct: 1309 ttggcagtaaccaaaggaggctccttcagtggatccacagtactcacaaagaggtcaaca 1250
Query: 2423 ggagctaattgagatggttcaccttctcggtcataccttaaagccagtctatcaaggtat 2482
|| || | |||||||| |||||||| || |||||||| | ||||| |||||| ||
Sbjct: 1249 ggtgcaagcattgatggttcgccttctcgttcgtaccttaatgacagtcgatcaagatac 1190
Query: 2483 gtttcacggttgattggggaccactttgggaactgatccaaaatccaggacaaagcaaac 2542
|||||||| |||| || ||||||| || |||||||| | |||||| ||||| ||||||
Sbjct: 1189 gtttcacgactgataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaac 1130
Query: 2543 cagatctcaca 2553
||||| |||||
Sbjct: 1129 cagatttcaca 1119
Score = 147 bits (74), Expect = 4e-033
Identities = 254/314 (80%)
Strand = Plus / Minus
Query: 920 gtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccatatg 979
||||||||||| |||||||| || || |||| || | || |||||||||||||| ||
Sbjct: 2740 gtgttgatataggcaaatctttcaagccatttcagacctcccccatagccataccagatt 2681
Query: 980 ggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattc 1039
|| ||||| ||||| | | |||||| | || || | |||||| || | ||| || |||
Sbjct: 2680 gggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgcaacacctggttc 2621
Query: 1040 aaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcag 1099
||||| || || || ||||| |||||||| || ||||| |||| ||| || ||||| |||
Sbjct: 2620 aaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttgggcatacag 2561
Query: 1100 tagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaaca 1159
|| || || ||||||||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 2560 taaatggaccgccagcctcgagtgtgcatcttgaatccagtcagaatgtcctctgtgact 2501
Query: 1160 gaaccatagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctg 1219
|| ||||||||||| |||| ||| ||||||| || |||||||| ||||| |||||||||
Sbjct: 2500 gatccatagatccatccaagctcttttccccattccgttttgtcttcatatccacagctg 2441
Query: 1220 atgacatgaatagc 1233
||||||||||||||
Sbjct: 2440 atgacatgaatagc 2427
Score = 91.7 bits (46), Expect = 2e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 374 cggttctgcttccccatgaggcccttgaggaaggggtacaggtggacaatcacccagaac 433
||||||||| | |||||||| ||||||||||| || |||||||| ||||| ||||||||
Sbjct: 3283 cggttctgcctgcccatgagacccttgaggaaaggatacaggtgcacaataacccagaat 3224
Query: 434 gcaaagaagagcttcccgaaaagaggtccccatgactg 471
|||||||| ||||| || || ||||| |||||||||||
Sbjct: 3223 gcaaagaaaagcttacccaagagaggaccccatgactg 3186
Score = 87.7 bits (44), Expect = 3e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 674 gcaaataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattca 733
||||| ||||| ||||||| || ||||| ||||||||||| || || | |||||||||
Sbjct: 2986 gcaaaaaaatgtgcagaaacccctccaataacccagaactgttcatttcgccaccattct 2927
Query: 734 tcaatgccaacaccactccacctcatctcaaggataccagtggcaaagattgagat 789
||||||| || |||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 2926 tcaatgctcactccactccacctcatttccagaataccagtggcaaaaattgagat 2871
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 2645 acaatgaccattctgtacggatttattctggatgaaggaattggcacttttc 2696
||||||||||||| ||| ||||||||| || ||||||||||||||||||||
Sbjct: 1027 acaatgaccattcggtatggatttattttgcttgaaggaattggcacttttc 976
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 291 bits (147), Expect = 1e-076
Identities = 489/603 (81%)
Strand = Plus / Minus
Query: 1855 attcatggcaccagccttcttgtgatgttggaatccaggacgtttttcacgagacacata 1914
|||||| ||||| || |||||||| |||||||| ||||| | |||||||||||||||||
Sbjct: 647 attcatagcaccggctttcttgtggtgttggaagccaggcctcttttcacgagacacata 588
Query: 1915 aaccaaacgaggaagttcattgccttcaacgtcaagccctccactgtgacccaggaaaac 1974
|| | ||| || ||||||||||||||| || | |||||||||||| || | || ||
Sbjct: 587 gactagacgtggtagttcattgccttcagtatccatccctccactgtgtcctaaaaacac 528
Query: 1975 ctgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttgcat 2034
||| ||||| |||||||||||||| ||||| || |||||||| | || |||||||||||
Sbjct: 527 ctgtatcatcccaggatggtccctggtattatttccaggccagagagtgccatcttgcat 468
Query: 2035 gatccatccctcctcgggaactttttgtgcattggctacaagaccattgatacgaacttt 2094
| ||| ||||| || || || || || || || || ||||| ||||||| ||||| ||
Sbjct: 467 aacccagccctcttcaggtaccttctgggccttcgcaacaagcgcattgatccgaacctt 408
Query: 2095 gaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttgaacttt 2154
|||||||||||||||||||||||| |||| || ||||| ||||| | || || |||||
Sbjct: 407 gaattcttcatattctctcttcattgccctccgctcttttacaaaagtaggctgtacttt 348
Query: 2155 gtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctctatgtt 2214
||| ||||||||||| |||||| | | ||||||||| || ||||| || || || |||||
Sbjct: 347 gtccttcaagtaatccattttcagtgaaaagtaccactctggagctctgggttcaatgtt 288
Query: 2215 gtacttcttacagaacggaacccattttctagcaaactctgaagtttcagagagagcatc 2274
|||| || || || || |||||||| || ||||| ||||||||||| || || | ||
Sbjct: 287 aaactttttgcaaaatggcacccatttccttgcaaattctgaagtttctgaaagggattc 228
Query: 2275 aaaagtcagcatagcagctccatcatccgaaacatagcaagataccttgtcaaccggata 2334
||||||| ||| || |||||||| || ||||||||||| || ||||||||||| |||||
Sbjct: 227 gaaagtcaacatggctgctccatcgtcagaaacatagcaggaaaccttgtcaacaggata 168
Query: 2335 atcgacagcaaggatggaaagcacagtatttgcagtgacaagaggaggctccttcatagg 2394
||| |||| || || || || ||||| |||||||| ||||||||||||||||| | |||
Sbjct: 167 atccacagacagaatcgacagaacagtgtttgcagtaacaagaggaggctcctttaaagg 108
Query: 2395 atccacagtactgacaaagatatcaacaggagctaattgagatggttcaccttctcggtc 2454
|| || ||||||||||| || |||| || ||| || || ||||||||||||||||||||
Sbjct: 107 gtcaactgtactgacaaaaatgtcaatagcagccaactgtgatggttcaccttctcggtc 48
Query: 2455 ata 2457
|||
Sbjct: 47 ata 45
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 266 bits (134), Expect = 6e-069
Identities = 626/790 (79%)
Strand = Plus / Minus
Query: 1661 gcatatcggtcattcctatcaataccatcaaacctctgaggaaattggacataacagaca 1720
|||||||| ||||| || ||||| ||||||||||| ||||| || || |||||||||||
Sbjct: 2528 gcatatcgatcatttctgtcaatgccatcaaacctttgagggaactgaacataacagact 2469
Query: 1721 ttccttcctaggtttgggtccataaggaagcacatagcttctcgaagagccttgctatta 1780
||| | || || | || ||||| | || ||||| || || ||||| ||| |||| ||
Sbjct: 2468 ttcttcccaagagtaggatccatcataaaacacatggcctcacgaagggccctgctgttg 2409
Query: 1781 ttgatgtagtggtcacagtcaagattcaacatgtattgcccattagtaaggacagctgat 1840
|| || || |||||||| |||||||| | ||| || | ||||| ||||| || || ||
Sbjct: 2408 tttatataatggtcacaatcaagattgagcatataagggccattggtaagaactgcggaa 2349
Query: 1841 acacgaacaagtgcattcatggcaccagccttcttgtgatgttggaatccaggacgtttt 1900
|||||||| | || |||||| |||||||| || ||||| |||| || ||||| | |||
Sbjct: 2348 acacgaaccaatgaattcattgcaccagcttttttgtggtgttcaaaaccaggtctcttt 2289
Query: 1901 tcacgagacacataaaccaaacgaggaagttcattgccttcaacgtcaagccctccactg 1960
|||||||| ||||| || | ||||| ||||||||||| || ||||||||| |||||
Sbjct: 2288 tcacgagaaacatatacaagtcgaggtagttcattgccatcggtgtcaagcccaccacta 2229
Query: 1961 tgacccaggaaaacctgaatcattccaggatggtccctagtattgttcccaggccaaggt 2020
||||| | ||| ||||| ||||| ||||||||||||| ||||| || ||||||||||||
Sbjct: 2228 tgacctaagaacacctgtatcatcccaggatggtcccgggtattatttccaggccaaggt 2169
Query: 2021 gtaccatcttgcatgatccatccctcctcgggaactttttgtgcattggctacaagacca 2080
|| ||||||||||| ||||| || || || ||||| || || || || || |||||| ||
Sbjct: 2168 gttccatcttgcataatccagccttcttcaggaaccttctgagctttagcaacaagagca 2109
Query: 2081 ttgatacgaactttgaattcttcatattctctcttcatggcccggcgttctttcacaaat 2140
||||| || || ||||| |||||||||||||||||||| || | |||||||| |||||
Sbjct: 2108 ttgattcggaccttgaactcttcatattctctcttcattgctctacgttcttttacaaaa 2049
Query: 2141 gaagtttgaactttgtctttcaagtaatcaattttctgagcaaagtaccattccggagcc 2200
|||| ||| ||||| || |||| || || || || |||||||| ||||| || ||||||
Sbjct: 2048 gaaggttgcactttatccttcagatagtctatcttttgagcaaaataccactctggagcc 1989
Query: 2201 ctaggctctatgttgtacttcttacagaacggaacccattttctagcaaactctgaagtt 2260
|| || || || | | || ||| || || |||||||| || ||||| ||||| |||
Sbjct: 1988 ctgggttcaatatcaaattttttaacaaatggcacccatttccttgcaaattctgaggtt 1929
Query: 2261 tcagagagagcatcaaaagtcagcatagcagctccatcatccgaaacatagcaagatacc 2320
||||| || || ||||| || ||||| ||||||||||| || || ||||| || || ||
Sbjct: 1928 tcagaaagggcttcaaatgttagcattgcagctccatcgtcagacacataacatgaaact 1869
Query: 2321 ttgtcaaccggataatcgacagcaaggatggaaagcacagtatttgcagtgacaagagga 2380
|| ||||| ||||| || |||| ||| || || | ||||||||||| || |||||||||
Sbjct: 1868 ttatcaactggatagtccacagaaagaattgacaaaacagtatttgccgtcacaagagga 1809
Query: 2381 ggctccttcataggatccacagtactgacaaagatatcaacaggagctaattgagatggt 2440
||||||||||||||||| || || |||||||| |||||||||| ||| || ||||||||
Sbjct: 1808 ggctccttcataggatcaactgtgctgacaaaaatatcaacagcagccaactgagatggc 1749
Query: 2441 tcaccttctc 2450
|| |||||||
Sbjct: 1748 tctccttctc 1739
Score = 149 bits (75), Expect = 1e-033
Identities = 297/371 (80%)
Strand = Plus / Minus
Query: 968 ccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccga 1027
|||||||| || |||||||||||||| | ||||||||| | || || | |||||| ||
Sbjct: 3215 ccataccaaattggacaatgcctgctaagaagaatttccacagagcccaaagcccatcgc 3156
Query: 1028 agcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgc 1087
|| ||||| |||| |||||| ||||| || || ||||||||||||||||| || || ||
Sbjct: 3155 agaacttggttcagacgatcagaaagattaattggagcagatcccttgaatgcagggcga 3096
Query: 1088 ttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatg 1147
|||||| ||||| ||||||||||| || ||||||||||| || || || || | |||
Sbjct: 3095 ggaggcatacagtatattgatcgccaaccacgagcatgcattttaaagccagtcaaaata 3036
Query: 1148 tcttctgtaacagaaccatagatccacccaatctcagttccccagtcagttttgtcctca 1207
|||||||| ||||||||||| ||||| |||||||| ||||||| || | ||||| |||
Sbjct: 3035 tcttctgtcacagaaccatatatccaaccaatctcttttccccaatctgacttgtcttca 2976
Query: 1208 tagccacagctgatgacatgaatagcttctttcagaagagactctggagttgcagattgt 1267
|| ||||||||||| ||||| || |||||||| | | | | |||||||||||||||
Sbjct: 2975 taaccacagctgattacatggattgcttcttttaataaatcagcaggagttgcagattgt 2916
Query: 1268 ggaacaccgccatattccatcagagtagaggctacaaaaacactggactggccaaatctc 1327
|| |||||||||| ||||| |||| || || ||||||||| ||| || |||||| |
Sbjct: 2915 ggcacaccgccattctccatttgagtggatgccacaaaaacaagggattgaccaaatttt 2856
Query: 1328 ttctccaagct 1338
||||| |||||
Sbjct: 2855 ttctctaagct 2845
Score = 79.8 bits (40), Expect = 7e-013
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 698 ccaatgacccagaactgctcgttcctccaccattcatcaatgccaacaccactcca 753
||||| |||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 3485 ccaatcacccagaactgctcattcctccaccattcatcaatgccaaccccgctcca 3430
Score = 46.1 bits (23), Expect = 0.010
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 398 ttgaggaaggggtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaaaga 457
|||||||| || || ||||| ||||||||||| || ||||| ||||| ||||| || ||
Sbjct: 3785 ttgaggaaaggataaaggtgaacaatcacccaaaaagcaaaaaagagtttcccaaacagg 3726
Query: 458 ggtccccatga 468
|| ||||||||
Sbjct: 3725 ggaccccatga 3715
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 258 bits (130), Expect = 1e-066
Identities = 492/613 (80%)
Strand = Plus / Plus
Query: 1973 acctgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttgc 2032
||||| ||||| || |||||||| | ||| ||||| || ||||| || || |||||||||
Sbjct: 13 acctggatcatccccggatggtctcgagtgttgttgcctggccatggagttccatcttgc 72
Query: 2033 atgatccatccctcctcgggaactttttgtgcattggctacaagaccattgatacgaact 2092
||| |||||||||| || || ||||| || || ||||| |||||| |||| || || |
Sbjct: 73 atggtccatccctcttctggcactttntgcgctttggccacaagagcattaatccggatc 132
Query: 2093 ttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttgaact 2152
||| | ||||||||||| |||||||| || | |||||||| ||||| |||| || |||
Sbjct: 133 ttgtactcttcatattccctcttcattgctctccgttctttaacaaaggaaggctgtact 192
Query: 2153 ttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctctatg 2212
|| || ||||| |||||||| ||||| |||||||| |||| |||||||| ||||| ||
Sbjct: 193 ttatccttcaaataatcaatcttctgggcaaagtagaattctggagccctgggctcgata 252
Query: 2213 ttgtacttcttacagaacggaacccattttctagcaaactctgaagtttcagagagagca 2272
|||| || || || || || ||||| || || || || ||||||||||| || || |
Sbjct: 253 ctgtattttttgcaaaatggcacccacttccttgcgaattctgaagtttctgaaagggtt 312
Query: 2273 tcaaaagtcagcatagcagctccatcatccgaaacatagcaagataccttgtcaaccgga 2332
|||||||||| ||| || ||||||||||| ||||||||||| || || || || || |||
Sbjct: 313 tcaaaagtcaacattgccgctccatcatcagaaacatagcatgaaactttatcgacagga 372
Query: 2333 taatcgacagcaaggatggaaagcacagtatttgcagtgacaagaggaggctccttcata 2392
||||| || |||||||| || || ||||||||||| |||||||||||||||||||| | |
Sbjct: 373 taatccacggcaaggatagacagaacagtatttgctgtgacaagaggaggctcctttaga 432
Query: 2393 ggatccacagtactgacaaagatatcaacaggagctaattgagatggttcaccttctcgg 2452
|||||||| ||||||||||| ||||||||| || || |||||||| || ||||||| |
Sbjct: 433 ggatccactgtactgacaaaaatatcaacaccggccaactgagatggctctccttctctg 492
Query: 2453 tcataccttaaagccagtctatcaaggtatgtttcacggttgattggggaccactttggg 2512
||| |||| |||| || || ||||| |||||||| ||||| || || ||| || ||
Sbjct: 493 tcaaacctcaaagaaagcctgtcaagatatgtttctcggttaatgggcatccatttagga 552
Query: 2513 aactgatccaaaatccaggacaaagcaaaccagatctcacatatgacggataaaagccac 2572
||||| || | |||||| |||| |||||||||| ||||||||| ||||| | |||||
Sbjct: 553 aactggtcaagaatccatgacacggcaaaccagacctcacatatcacggagaccagccaa 612
Query: 2573 agtggatatgcat 2585
|||||||||||||
Sbjct: 613 agtggatatgcat 625
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 248 bits (125), Expect = 1e-063
Identities = 620/785 (78%)
Strand = Plus / Minus
Query: 1769 gccttgctattattgatgtagtggtcacagtcaagattcaacatgtattgcccattagta 1828
||||||||||| || |||||||| ||||| || ||||||| ||| || | |||| ||
Sbjct: 1897 gccttgctattgttaatgtagtgatcacaatccagattcagcataaatggagcattggtg 1838
Query: 1829 aggacagctgatacacgaacaagtgcattcatggcaccagccttcttgtgatgttggaat 1888
|| ||||| || || ||||| | |||||||||||||| |||||||||||||| |||||
Sbjct: 1837 agcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtgatgctggaaa 1778
Query: 1889 ccaggacgtttttcacgagacacataaaccaaacgaggaagttcattgccttcaacgtca 1948
||||| | || |||||||| ||||| || | |||||||| ||||||||||| ||
Sbjct: 1777 ccaggtctcttctcacgagaaacatatactagccgaggaagctcattgccttctgtatcg 1718
Query: 1949 agccctccactgtgacccaggaaaacctgaatcattccaggatggtccctagtattgttc 2008
|| || ||||||||||||| ||| || || ||||| ||||||||||| | ||||| ||
Sbjct: 1717 aggccgccactgtgacccaagaacacttggatcataccaggatggtcacgggtattatta 1658
Query: 2009 ccaggccaaggtgtaccatcttgcatgatccatccctcctcgggaactttttgtgcattg 2068
||||||||||| ||||| |||||||| ||||||| |||| ||| ||||| || ||
Sbjct: 1657 ccaggccaaggcgtaccgtcttgcattgtccatccttccttgggcactttagaggccttt 1598
Query: 2069 gctacaagaccattgatacgaactttgaattcttcatattctctcttcatggcccggcgt 2128
|| || | | |||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct: 1597 gcaaccaaccgattgatgcgcaccttgaattcttcatattctctcttcatggcacggcgc 1538
Query: 2129 tctttcacaaatgaagtttgaactttgtctttcaagtaatcaattttctgagcaaagtac 2188
||||| ||||| | | ||||| |||||| |||| || ||||||||||||| || ||
Sbjct: 1537 tctttgacaaaggtgggttgaaatttgtccttcagatagtcaattttctgagagaaatag 1478
Query: 2189 cattccggagccctaggctctatgttgtacttcttacagaacggaacccattttctagca 2248
||| ||||| | |||||| |||| | | ||||| ||||| || ||||||||||| |||
Sbjct: 1477 atttcgggagcgcgaggctcaatgtcgaatttcttgcagaatggtacccattttctggca 1418
Query: 2249 aactctgaagtttcagagagagcatcaaaagtcagcatagcagctccatcatccgaaaca 2308
|| ||||| || |||||||||| |||||||| ||||| | ||||| ||||| || |||
Sbjct: 1417 aattctgaggtctcagagagagattcaaaagtaagcatcgacgctccgtcatcagagaca 1358
Query: 2309 tagcaagataccttgtcaaccggataatcgacagcaaggatggaaagcacagtatttgca 2368
|| || || || ||||| || || || || || | |||||| || | || ||||| |||
Sbjct: 1357 taacaggacacattgtctacagggtagtctactgaaaggattgataatactgtattggca 1298
Query: 2369 gtgacaagaggaggctccttcataggatccacagtactgacaaagatatcaacaggagct 2428
|| || | |||||||||||||| ||||| |||||||| ||||||| |||||||| ||
Sbjct: 1297 gtaaccaaaggaggctccttcagtggatctacagtactcacaaagaggtcaacaggtgca 1238
Query: 2429 aattgagatggttcaccttctcggtcataccttaaagccagtctatcaaggtatgtttca 2488
| |||||||| |||||||| || |||||||| | ||||| |||||| || ||||||
Sbjct: 1237 agcattgatggttcgccttctcgttcgtaccttaatgacagtcgatcaagatacgtttca 1178
Query: 2489 cggttgattggggaccactttgggaactgatccaaaatccaggacaaagcaaaccagatc 2548
|| |||| || ||||||| || |||||||| | |||||| ||||| |||||||||||
Sbjct: 1177 cgactgataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaaccagatt 1118
Query: 2549 tcaca 2553
|||||
Sbjct: 1117 tcaca 1113
Score = 147 bits (74), Expect = 4e-033
Identities = 254/314 (80%)
Strand = Plus / Minus
Query: 920 gtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccatatg 979
||||||||||| |||||||| || || |||| || | || |||||||||||||| ||
Sbjct: 2734 gtgttgatataggcaaatctttcaagccatttcagacctcccccatagccataccagatt 2675
Query: 980 ggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattc 1039
|| ||||| ||||| | | |||||| | || || | |||||| || | ||| || |||
Sbjct: 2674 gggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgcaacacctggttc 2615
Query: 1040 aaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcag 1099
||||| || || || ||||| |||||||| || ||||| |||| ||| || ||||| |||
Sbjct: 2614 aaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttgggcatacag 2555
Query: 1100 tagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaaca 1159
|| || || ||||||||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 2554 taaatggaccgccagcctcgagtgtgcatcttgaatccagtcagaatgtcctctgtgact 2495
Query: 1160 gaaccatagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctg 1219
|| ||||||||||| |||| ||| ||||||| || |||||||| ||||| |||||||||
Sbjct: 2494 gatccatagatccatccaagctcttttccccattccgttttgtcttcatatccacagctg 2435
Query: 1220 atgacatgaatagc 1233
||||||||||||||
Sbjct: 2434 atgacatgaatagc 2421
Score = 97.6 bits (49), Expect = 3e-018
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
|||||||||||||| || ||||||||||| ||||| |||||| ||| ||| ||||| ||
Sbjct: 2083 ccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatcaaag 2024
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagga 1702
|| || ||||| | || || || |||||||| | |||||||||||| || ||||||||
Sbjct: 2023 aatacggtgtttcgattggcgtaacggtcattgcgatcaataccatcgaatctctgaggg 1964
Query: 1703 aattggacataacagac 1719
|||||||||||||||||
Sbjct: 1963 aattggacataacagac 1947
Score = 91.7 bits (46), Expect = 2e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 374 cggttctgcttccccatgaggcccttgaggaaggggtacaggtggacaatcacccagaac 433
||||||||| | |||||||| ||||||||||| || |||||||| ||||| ||||||||
Sbjct: 3277 cggttctgcctgcccatgagacccttgaggaaaggatacaggtgcacaatgacccagaat 3218
Query: 434 gcaaagaagagcttcccgaaaagaggtccccatgactg 471
|||||||| ||||| || || ||||| |||||||||||
Sbjct: 3217 gcaaagaaaagcttacccaagagaggaccccatgactg 3180
Score = 79.8 bits (40), Expect = 7e-013
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 674 gcaaataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattca 733
||||| ||||| ||||||| || ||||| ||||||||||| || || | |||||||||
Sbjct: 2980 gcaaaaaaatgtgcagaaacccctccaataacccagaactgttcatttcgccaccattct 2921
Query: 734 tcaatgccaacaccactccacctcatctcaaggataccagtggcaaagattgagat 789
||||||| || |||||||||||||| | || |||||||||||||| ||||||||
Sbjct: 2920 tcaatgctcactccactccacctcattttcagaataccagtggcaaaaattgagat 2865
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 2645 acaatgaccattctgtacggatttattctggatgaaggaattggcacttttc 2696
||||||||||||| ||| ||||||||| || ||||||||||||||||||||
Sbjct: 1021 acaatgaccattcggtatggatttattttgcttgaaggaattggcacttttc 970
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 248 bits (125), Expect = 1e-063
Identities = 557/701 (79%)
Strand = Plus / Minus
Query: 1853 gcattcatggcaccagccttcttgtgatgttggaatccaggacgtttttcacgagacaca 1912
|||||||||||||| |||||||||||||| ||||| ||||| | || |||||||| |||
Sbjct: 1829 gcattcatggcaccggccttcttgtgatgctggaaaccaggtctcttctcacgagaaaca 1770
Query: 1913 taaaccaaacgaggaagttcattgccttcaacgtcaagccctccactgtgacccaggaaa 1972
|| || | |||||||| ||||||||||| || || || ||||||||||||| |||
Sbjct: 1769 tatactagccgaggaagctcattgccttctgtatcgaggccgccactgtgacccaagaac 1710
Query: 1973 acctgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttgc 2032
|| || ||||| ||||||||||| | ||||| || ||||||||||| ||||| ||||||
Sbjct: 1709 acttggatcataccaggatggtcacgggtattattaccaggccaaggcgtaccgtcttgc 1650
Query: 2033 atgatccatccctcctcgggaactttttgtgcattggctacaagaccattgatacgaact 2092
|| ||||||| |||| ||| ||||| || || || || | | |||||| || ||
Sbjct: 1649 attgtccatccttccttgggcactttagaggcctttgcaaccaaccgattgatgcgcacc 1590
Query: 2093 ttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttgaact 2152
||||||||||||||||||||||||||||||||||| ||||| ||||| | | ||||| |
Sbjct: 1589 ttgaattcttcatattctctcttcatggcccggcgctctttgacaaaggtgggttgaaat 1530
Query: 2153 ttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctctatg 2212
||||| |||| || ||||||||||||| || || ||| ||||| | |||||| |||
Sbjct: 1529 ttgtccttcagatagtcaattttctgagagaaatagatttcgggagcgcgaggctcaatg 1470
Query: 2213 ttgtacttcttacagaacggaacccattttctagcaaactctgaagtttcagagagagca 2272
| | | ||||| ||||| || ||||||||||| ||||| ||||| || ||||||||||
Sbjct: 1469 tcgaatttcttgcagaatggtacccattttctggcaaattctgaggtctcagagagagat 1410
Query: 2273 tcaaaagtcagcatagcagctccatcatccgaaacatagcaagataccttgtcaaccgga 2332
|||||||| ||||| | ||||| ||||| || ||||| || || || ||||| || ||
Sbjct: 1409 tcaaaagtaagcatcgacgctccgtcatcagagacataacaggacacattgtctacaggg 1350
Query: 2333 taatcgacagcaaggatggaaagcacagtatttgcagtgacaagaggaggctccttcata 2392
|| || || | |||||| || | || ||||| ||||| || | ||||||||||||||
Sbjct: 1349 tagtctactgaaaggattgataatactgtattggcagtaaccaaaggaggctccttcagt 1290
Query: 2393 ggatccacagtactgacaaagatatcaacaggagctaattgagatggttcaccttctcgg 2452
||||| |||||||| ||||||| |||||||| || | |||||||| ||||||||
Sbjct: 1289 ggatctacagtactcacaaagaggtcaacaggtgcaagcattgatggttcgccttctcgt 1230
Query: 2453 tcataccttaaagccagtctatcaaggtatgtttcacggttgattggggaccactttggg 2512
|| |||||||| | ||||| |||||| || |||||||| |||| || ||||||| ||
Sbjct: 1229 tcgtaccttaatgacagtcgatcaagatacgtttcacgactgataggcaaccacttggga 1170
Query: 2513 aactgatccaaaatccaggacaaagcaaaccagatctcaca 2553
|||||||| | |||||| ||||| ||||||||||| |||||
Sbjct: 1169 aactgatcaagaatccatgacaaggcaaaccagatttcaca 1129
Score = 147 bits (74), Expect = 4e-033
Identities = 254/314 (80%)
Strand = Plus / Minus
Query: 920 gtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccatatg 979
||||||||||| |||||||| || || |||| || | || |||||||||||||| ||
Sbjct: 2750 gtgttgatataggcaaatctttcaagccatttcagacctcccccatagccataccagatt 2691
Query: 980 ggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattc 1039
|| ||||| ||||| | | |||||| | || || | |||||| || | ||| || |||
Sbjct: 2690 gggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgcaacacctggttc 2631
Query: 1040 aaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcag 1099
||||| || || || ||||| |||||||| || ||||| |||| ||| || ||||| |||
Sbjct: 2630 aaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttgggcatacag 2571
Query: 1100 tagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaaca 1159
|| || || ||||||||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 2570 taaatggaccgccagcctcgagtgtgcatcttgaatccagtcagaatgtcctctgtgact 2511
Query: 1160 gaaccatagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctg 1219
|| ||||||||||| |||| ||| ||||||| || |||||||| ||||| |||||||||
Sbjct: 2510 gatccatagatccatccaagctcttttccccattccgttttgtcttcatatccacagctg 2451
Query: 1220 atgacatgaatagc 1233
||||||||||||||
Sbjct: 2450 atgacatgaatagc 2437
Score = 97.6 bits (49), Expect = 3e-018
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
|||||||||||||| || ||||||||||| ||||| |||||| ||| ||| ||||| ||
Sbjct: 2099 ccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatcaaag 2040
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagga 1702
|| || ||||| | || || || |||||||| | |||||||||||| || ||||||||
Sbjct: 2039 aatacggtgtttcgattggcgtaacggtcattgcgatcaataccatcgaatctctgaggg 1980
Query: 1703 aattggacataacagac 1719
|||||||||||||||||
Sbjct: 1979 aattggacataacagac 1963
Score = 91.7 bits (46), Expect = 2e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 374 cggttctgcttccccatgaggcccttgaggaaggggtacaggtggacaatcacccagaac 433
||||||||| | |||||||| ||||||||||| || |||||||| ||||| ||||||||
Sbjct: 3293 cggttctgcctgcccatgagacccttgaggaaaggatacaggtgcacaatgacccagaat 3234
Query: 434 gcaaagaagagcttcccgaaaagaggtccccatgactg 471
|||||||| ||||| || || ||||| |||||||||||
Sbjct: 3233 gcaaagaaaagcttacccaagagaggaccccatgactg 3196
Score = 87.7 bits (44), Expect = 3e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 674 gcaaataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattca 733
||||| ||||| ||||||| || ||||| ||||||||||| || || | |||||||||
Sbjct: 2996 gcaaaaaaatgtgcagaaacccctccaataacccagaactgttcatttcgccaccattct 2937
Query: 734 tcaatgccaacaccactccacctcatctcaaggataccagtggcaaagattgagat 789
||||||| || |||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 2936 tcaatgctcactccactccacctcatttccagaataccagtggcaaaaattgagat 2881
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 2645 acaatgaccattctgtacggatttattctggatgaaggaattggcacttttc 2696
||||||||||||| ||| ||||||||| || ||||||||||||||||||||
Sbjct: 1037 acaatgaccattcggtatggatttattttgcttgaaggaattggcacttttc 986
>gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_A01_A029 3', mRNA sequence
Length = 681
Score = 214 bits (108), Expect = 2e-053
Identities = 276/332 (83%)
Strand = Plus / Plus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | |||||||||| |||||||| |||||
Sbjct: 23 tagccataccaaattggacaatgcctgctcagtagaatttcaacagaaccaagggcccat 82
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
|| |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||
Sbjct: 83 cggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaatgcagga 142
Query: 1085 cgcttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgaga 1144
|| |||||||||||| ||||| |||||||||||||||||| || || || || | |
Sbjct: 143 cgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaacccagtcaaa 202
Query: 1145 atgtcttctgtaacagaaccatagatccacccaatctcagttccccagtcagttttgtcc 1204
|| |||||||| ||||||||||| |||||||||||||| ||||||| || | |||||
Sbjct: 203 atatcttctgtgacagaaccataaatccacccaatctcttttccccattctgacttgtct 262
Query: 1205 tcatagccacagctgatgacatgaatagcttctttcagaagagactctggagttgcagat 1264
||||| ||||||||||| |||||||| |||||||||| | ||| | ||| | ||||||
Sbjct: 263 tcatatccacagctgataacatgaatggcttctttcaataaagaagcaggattcgcagat 322
Query: 1265 tgtggaacaccgccatattccatcagagtaga 1296
||||||| ||| |||| |||||| || |||||
Sbjct: 323 tgtggaagaccaccattttccatgagggtaga 354
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1319 ccaaatctcttctccaagctcatttgagacataatcagcgatttctcatcatcaaa 1374
|||||||| ||||| |||||| |||| ||||| | || |||||||||||||||||
Sbjct: 377 ccaaatcttttctctaagctcctttgggacatgagcaatgatttctcatcatcaaa 432
>gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_A04_A029 5', mRNA sequence
Length = 695
Score = 214 bits (108), Expect = 2e-053
Identities = 276/332 (83%)
Strand = Plus / Minus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | |||||||||| |||||||| |||||
Sbjct: 350 tagccataccaaattggacaatgcctgctcagtagaatttcaacagaaccaagggcccat 291
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
|| |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||
Sbjct: 290 cggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaatgcagga 231
Query: 1085 cgcttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgaga 1144
|| |||||||||||| ||||| |||||||||||||||||| || || || || | |
Sbjct: 230 cgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaacccagtcaaa 171
Query: 1145 atgtcttctgtaacagaaccatagatccacccaatctcagttccccagtcagttttgtcc 1204
|| |||||||| ||||||||||| |||||||||||||| ||||||| || | |||||
Sbjct: 170 atatcttctgtgacagaaccataaatccacccaatctcttttccccattctgacttgtct 111
Query: 1205 tcatagccacagctgatgacatgaatagcttctttcagaagagactctggagttgcagat 1264
||||| ||||||||||| |||||||| |||||||||| | ||| | ||| | ||||||
Sbjct: 110 tcatatccacagctgataacatgaatggcttctttcaataaagaagcaggattcgcagat 51
Query: 1265 tgtggaacaccgccatattccatcagagtaga 1296
||||||| ||| |||| |||||| || |||||
Sbjct: 50 tgtggaagaccaccattttccatgagggtaga 19
Score = 65.9 bits (33), Expect = 1e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 668 aagacggcaaataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccac 727
||||||||||| | ||| || || | ||| ||||| ||||| || ||||| |||||||||
Sbjct: 647 aagacggcaaacagatgtgctgatacacctccaataacccaaaattgctcattcctccac 588
Query: 728 cattcatcaatgccaac 744
|||||||||||||||||
Sbjct: 587 cattcatcaatgccaac 571
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 836 atgatgaacttcccagtgagaagacaaactgctggca 872
||||| |||||||| || ||||||||||| |||||||
Sbjct: 479 atgataaacttccctgtaagaagacaaacagctggca 443
>gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV105_E07 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 758
Score = 206 bits (104), Expect = 5e-051
Identities = 275/332 (82%)
Strand = Plus / Minus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | | |||||||| |||||||| |||||
Sbjct: 398 tagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagggcccat 339
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
|||| |||||||||||||||||| ||||| ||||| || |||||||||||||| || ||
Sbjct: 338 cgaaacacttgattcaaacgatctgaaagattgattggtgcagatcccttgaatgcagga 279
Query: 1085 cgcttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgaga 1144
|| |||||||||||| ||||| |||||||||||||||||| || || || || | |
Sbjct: 278 cgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaacccagtcaaa 219
Query: 1145 atgtcttctgtaacagaaccatagatccacccaatctcagttccccagtcagttttgtcc 1204
|| |||||||| ||||||||||| |||||||||||||| ||||||| || | |||||
Sbjct: 218 atatcttctgtgacagaaccataaatccacccaatctcttttccccattctgacttgtct 159
Query: 1205 tcatagccacagctgatgacatgaatagcttctttcagaagagactctggagttgcagat 1264
||||| ||||||||||| |||||||| |||||||||| | ||| | ||| | ||||||
Sbjct: 158 tcatatccacagctgataacatgaatggcttctttcaataaagaagcaggattcgcagat 99
Query: 1265 tgtggaacaccgccatattccatcagagtaga 1296
||||||| ||| |||| |||||| || |||||
Sbjct: 98 tgtggaagaccaccattttccatgagggtaga 67
Score = 50.1 bits (25), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 698 ccaatgacccagaactgctcgttcctccaccattcatcaatgcc 741
||||| ||||| || | ||| |||||||||||||||||||||||
Sbjct: 665 ccaataacccaaaattnctcattcctccaccattcatcaatgcc 622
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 836 atgatgaacttcccagtgagaagacaaactgctggca 872
||||| |||||||| || ||||||||||| |||||||
Sbjct: 527 atgataaacttccctgtaagaagacaaacagctggca 491
>gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC32 3' end, mRNA sequence
Length = 737
Score = 172 bits (87), Expect = 7e-041
Identities = 237/287 (82%)
Strand = Plus / Minus
Query: 1010 gaaccaagagcccaccgaagcacttgattcaaacgatccgaaaggttgataggagcagat 1069
|||||||| ||||| || |||||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 731 gaaccaagggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagat 672
Query: 1070 cccttgaaagctggtcgcttaggcatgcagtagattgatcgccagcctcgagcatgcatc 1129
|||||||| || || || ||| |||||||| ||||| ||||||||||||||||||
Sbjct: 671 cccttgaatgcaggacgtgcaggtatgcagtatattgaaatccagcctcgagcatgcatt 612
Query: 1130 ttgaatccggtgagaatgtcttctgtaacagaaccatagatccacccaatctcagttccc 1189
|| || || || | ||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 611 ttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccc 552
Query: 1190 cagtcagttttgtcctcatagccacagctgatgacatgaatagcttctttcagaagagac 1249
|| || | ||||| ||||| ||||||||||| |||||||| |||||||||| | |||
Sbjct: 551 cattctgacttgtcttcatatccacagctgataacatgaatggcttctttcaataaagaa 492
Query: 1250 tctggagttgcagattgtggaacaccgccatattccatcagagtaga 1296
| ||| | ||||||||||||| ||| |||| |||||| || |||||
Sbjct: 491 gcaggattcgcagattgtggaagaccaccattttccatgagggtaga 445
Score = 77.8 bits (39), Expect = 3e-012
Identities = 111/135 (82%)
Strand = Plus / Minus
Query: 1579 acaaccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatc 1638
|||||| || ||||||||||| |||||||| || ||||| | |||||||||| | |||||
Sbjct: 156 acaacctgtacccacataaacaggcccttggataccatcgaaacctctcaaggtgatatc 97
Query: 1639 gaaaaacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctg 1698
|| ||||||||||| | || |||||||| || | | |||||| |||||||| |||||
Sbjct: 96 aaagaacacagtgttacgattagcatatcgatcgtgtcgatcaatgccatcaaatctctg 37
Query: 1699 aggaaattggacata 1713
|||||| || |||||
Sbjct: 36 aggaaactgtacata 22
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1319 ccaaatctcttctccaagctcatttgagacataatcagcgatttctcatcatcaaa 1374
|||||||| ||||| |||||| |||| ||||| | || |||||||||||||||||
Sbjct: 422 ccaaatcttttctctaagctcctttgggacatgagcaatgatttctcatcatcaaa 367
>gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_H10_A034 5', mRNA sequence
Length = 557
Score = 163 bits (82), Expect = 6e-038
Identities = 184/218 (84%)
Strand = Plus / Minus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | | |||||||| |||||||| |||||
Sbjct: 224 tagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagggcccat 165
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
||||||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||
Sbjct: 164 cgaagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaatgcagga 105
Query: 1085 cgcttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgaga 1144
|| |||||||||||| ||||| |||||||||||||||||| || || || || | |
Sbjct: 104 cgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaacccagtcaaa 45
Query: 1145 atgtcttctgtaacagaaccatagatccacccaatctc 1182
|| |||| ||| ||||||||||| ||||||||||||||
Sbjct: 44 atatcttatgtgacagaaccataaatccacccaatctc 7
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 698 ccaatgacccagaactgctcgttcctccaccattcatcaatgccaac 744
||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 491 ccaataacccaaaattgctcattcctccaccattcatcaatgccaac 445
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 836 atgatgaacttcccagtgagaagacaaactgctggca 872
||||| |||||||| || ||||||||||| |||||||
Sbjct: 353 atgataaacttccctgtaagaagacaaacagctggca 317
>gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_064_G04 5' similar to Arabidopsis
thaliana sequence At4g18780 cellulose synthase catalytic
subunit (IRX1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 463
Score = 159 bits (80), Expect = 1e-036
Identities = 210/254 (82%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 415 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 356
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 355 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 296
Query: 1106 gatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaacagaacca 1165
|| ||||| ||||| ||||||||||| || || |||||||||||||| |||||||||
Sbjct: 295 gagcgccaccctcgnnagtgcatcttgaaacctgttagaatgtcttctgtcacagaacca 236
Query: 1166 tagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgaca 1225
|||||||| || | ||| | ||||| || ||||| || || |||||||||||||| |||
Sbjct: 235 tagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcaca 176
Query: 1226 tgaatagcttcttt 1239
|| |||||||||||
Sbjct: 175 tgtatagcttcttt 162
>gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D05_A029 5', mRNA sequence
Length = 763
Score = 157 bits (79), Expect = 4e-036
Identities = 213/255 (83%), Gaps = 2/255 (0%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 492 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 433
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 432 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 373
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 372 gagcgccatcctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 314
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgac 1224
||||||||| || | ||| | ||||| || ||||| || || |||||||||||||| ||
Sbjct: 313 atagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcac 254
Query: 1225 atgaatagcttcttt 1239
||| |||||||||||
Sbjct: 253 atgtatagcttcttt 239
>gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_17_D10_A029 3', mRNA sequence
Length = 821
Score = 157 bits (79), Expect = 4e-036
Identities = 213/255 (83%), Gaps = 2/255 (0%)
Strand = Plus / Plus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 459 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 518
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 519 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 578
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 579 gagcgccatcctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 637
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgac 1224
||||||||| || | ||| | ||||| || ||||| || || |||||||||||||| ||
Sbjct: 638 atagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcac 697
Query: 1225 atgaatagcttcttt 1239
||| |||||||||||
Sbjct: 698 atgtatagcttcttt 712
Score = 52.0 bits (26), Expect = 2e-004
Identities = 113/142 (79%)
Strand = Plus / Plus
Query: 617 gtgacagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggca 676
|||||||| ||| | |||||||| || || | ||||| || ||||| || || || |||
Sbjct: 87 gtgacagtaaagttggtgtcgatgcccgccaataccttgagaagaccttgaaaaactgca 146
Query: 677 aataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatca 736
|| ||||| ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 147 aaaaaatgagcagagactcctccaatcacccaaaactgttcgttcctccaccattcttcg 206
Query: 737 atgccaacaccactccacctca 758
|||| || |||||||| ||||
Sbjct: 207 atgctcactccactccatctca 228
>gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_14_B08_A029 3', mRNA sequence
Length = 632
Score = 157 bits (79), Expect = 4e-036
Identities = 213/255 (83%), Gaps = 2/255 (0%)
Strand = Plus / Plus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 253 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 312
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 313 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 372
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 373 gagcgccaccctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 431
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgac 1224
||||||||| || | ||| | ||||| || ||||| || || |||||||||||||| ||
Sbjct: 432 atagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcac 491
Query: 1225 atgaatagcttcttt 1239
||| |||||||||||
Sbjct: 492 atgtatagcttcttt 506
>dbj|BD235989.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 619
Score = 157 bits (79), Expect = 4e-036
Identities = 213/255 (83%), Gaps = 2/255 (0%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 372 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 313
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 312 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 253
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 252 gagcgccatcctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 194
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgac 1224
||||||||| || | ||| | ||||| || ||||| || || |||||||||||||| ||
Sbjct: 193 atagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcac 134
Query: 1225 atgaatagcttcttt 1239
||| |||||||||||
Sbjct: 133 atgtatagcttcttt 119
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 157 bits (79), Expect = 4e-036
Identities = 213/255 (83%), Gaps = 2/255 (0%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 2234 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 2175
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 2174 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 2115
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 2114 gagcgccaccctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 2056
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgac 1224
||||||||| || | ||| | ||||| || ||||| || || |||||||||||||| ||
Sbjct: 2055 atagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcac 1996
Query: 1225 atgaatagcttcttt 1239
||| |||||||||||
Sbjct: 1995 atgtatagcttcttt 1981
Score = 91.7 bits (46), Expect = 2e-016
Identities = 313/402 (77%)
Strand = Plus / Minus
Query: 1852 tgcattcatggcaccagccttcttgtgatgttggaatccaggacgtttttcacgagacac 1911
||||||||||||||| |||||||| || || || | || || ||||| |||||||| ||
Sbjct: 1377 tgcattcatggcaccggccttcttatggtgctgatacccgggccgtttctcacgagagac 1318
Query: 1912 ataaaccaaacgaggaagttcattgccttcaacgtcaagccctccactgtgacccaggaa 1971
||| || | || || ||||| || ||||| |||||| || |||| |||| || | |||
Sbjct: 1317 atagacaagccggggcagttcgtttccttctacgtcatgcgctcctgtgtgtcctaagaa 1258
Query: 1972 aacctgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttg 2031
||||||||||| || || || || | ||| |||||||||||||||| ||| ||||| ||
Sbjct: 1257 tacctgaatcatcccggggtgatcacgagtgttgttcccaggccaagctgttccatcctg 1198
Query: 2032 catgatccatccctcctcgggaactttttgtgcattggctacaagaccattgatacgaac 2091
|||||||||||| || || || || || || ||||| ||||| ||||||| | |||
Sbjct: 1197 catgatccatccttcgtccggtgtcttctgagctttggcgacaagcgcattgatcctaac 1138
Query: 2092 tttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttgaac 2151
|||| |||| || || ||||| ||||| || ||||| || || ||||| || || ||
Sbjct: 1137 tttgtattcctcgtactctcttttcattgctcggcgctccttgacaaagttaggctgcac 1078
Query: 2152 tttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctctat 2211
||||||||||||||||| | |||| ||| ||||| |||| ||||| | |||||| ||
Sbjct: 1077 cttgtctttcaagtaatcgactttcagagagaagtagaattcaggagctcgaggctcgat 1018
Query: 2212 gttgtacttcttacagaacggaacccattttctagcaaactc 2253
||| | ||||| ||||| |||||||| || ||||| |||||
Sbjct: 1017 gttaaagttcttgcagaaaggaacccacttcctagcgaactc 976
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 362 atggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggggtacaggtggaca 421
||||| ||||||||||| ||| |||||||| || ||||||||||| |||| |||| |
Sbjct: 2858 atggtaggcgtgcggttttgccgacccatgagacctttgaggaagggatacaaatggaga 2799
Query: 422 atcacccagaacgcaaagaagagcttcccgaaaagaggtccccatgactggta 474
|||||||| | | || || | |||||| || ||||||||||||||||||||
Sbjct: 2798 atcacccatactgagaaaaacaacttcccaaacagaggtccccatgactggta 2746
Score = 56.0 bits (28), Expect = 1e-005
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| ||||||||||| |||||||| | || ||| ||| ||||||||
Sbjct: 1646 ccagtacccacatacactggcccttggatgccatccaatcccttcatgttgatatcgaag 1587
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctg 1698
||||||||||| | || |||||||| || | | ||| |||||||| ||||||||
Sbjct: 1586 aacacagtgtttcgattggcatatcgatcgctgcgatcgataccatcgaacctctg 1531
Score = 54.0 bits (27), Expect = 4e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 2503 ccactttgggaactgatccaaaatccaggacaaagcaaaccagatctcaca 2553
|||||| || |||||||| | ||||||||| ||||| ||||||||||||||
Sbjct: 726 ccacttgggaaactgatcaagaatccaggataaagcgaaccagatctcaca 676
Score = 52.0 bits (26), Expect = 2e-004
Identities = 113/142 (79%)
Strand = Plus / Minus
Query: 617 gtgacagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggca 676
|||||||| ||| | |||||||| || || | ||||| || ||||| || || || |||
Sbjct: 2606 gtgacagtaaagttggtgtcgatgcccgccaataccttgagaagaccttgaaaaactgca 2547
Query: 677 aataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatca 736
|| ||||| ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 2546 aaaaaatgagcagagactcctccaatcacccaaaactgttcgttcctccaccattcttcg 2487
Query: 737 atgccaacaccactccacctca 758
|||| || |||||||| ||||
Sbjct: 2486 atgctcactccactccatctca 2465
>gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_103_E08 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 363
Score = 151 bits (76), Expect = 2e-034
Identities = 201/240 (83%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 1001 atttcaatggaaccaagagcccaccgaagcacttgattcaaacgatccgaaaggttgata 1060
|||||||| ||||| | ||||| ||||| ||||| | || |||||| || || ||||||
Sbjct: 269 atttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctgatagattgata 210
Query: 1061 ggagcagatcccttgaaagctggtcgcttaggcatgcagtagattgatcgccagcctcga 1120
|||||||| |||||||| ||||||| ||| ||||||||||| || || ||||| |||||
Sbjct: 209 ggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagcgccaccctcg- 151
Query: 1121 gca-tgcatcttgaatccggtgagaatgtcttctgtaacagaaccatagatccacccaat 1179
||| ||||||||||| || || |||||||||||||| ||||||||||||||||| || |
Sbjct: 150 gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccatagatccatccgac 91
Query: 1180 ctcagttccccagtcagttttgtcctcatagccacagctgatgacatgaatagcttcttt 1239
||| | ||||| || ||||| || || |||||||||||||| ||||| |||||||||||
Sbjct: 90 ctctttcccccattcggttttctcttcgtagccacagctgatcacatgtatagcttcttt 31
>gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120E04 similar to Cellulose synthase, mRNA
sequence
Length = 431
Score = 151 bits (76), Expect = 2e-034
Identities = 284/350 (81%), Gaps = 5/350 (1%)
Strand = Plus / Minus
Query: 1028 agcacttgattcaaacgatccgaaaggttgataggagc-agatcccttgaaagctggtcg 1086
|||||||||||||||||||| ||||| ||||| || || ||| |||||||| || || ||
Sbjct: 423 agcacttgattcaaacgatctgaaagattgattggtgcgagaacccttgaatgcaggacg 364
Query: 1087 cttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgagaat 1146
|||||||||||| ||||| |||||||||||||||||| || || || || | |||
Sbjct: 363 tgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaacccagtcaaaat 304
Query: 1147 gtcttctgtaacagaaccatagatccacccaatctcagttccccagtcagttttgtcctc 1206
|||||||| ||||||||||| |||||||||||||| ||||||| || | ||||| ||
Sbjct: 303 atcttctgtgacagaaccataaatccacccaatctcttttccccattctgacttgtcttc 244
Query: 1207 atagccacagctgatgacatgaatagcttctttcagaagagactctggagttgcagattg 1266
||| ||||||||||| |||||||| |||||||||| | ||| | ||| | ||||||||
Sbjct: 243 atatccacagctgataacatgaatggcttctttcaataaagaagcaggattcgcagattg 184
Query: 1267 tggaacaccgccatattccatcagagtagaggctacaaaaacactg--gactggccaaat 1324
||||| ||| |||| |||||| || ||||| | | |||||||| || || ||||||
Sbjct: 183 tggaagaccaccattttccatgagggtaga--ttgaataaacactggtgattgaccaaat 126
Query: 1325 ctcttctccaagctcatttgagacataatcagcgatttctcatcatcaaa 1374
|| ||||| |||||| |||| ||||| | || |||||||||||||||||
Sbjct: 125 cttttctctaagctcctttgggacatgagcaatgatttctcatcatcaaa 76
>gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_B08 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 536
Score = 149 bits (75), Expect = 1e-033
Identities = 254/314 (80%)
Strand = Plus / Minus
Query: 920 gtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccatatg 979
||||||||||| |||||||| || || |||| || | || |||||||||||||| ||
Sbjct: 453 gtgttgatataggcaaatctttcaagccatttcagacctcccccatagccataccagatt 394
Query: 980 ggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattc 1039
|| ||||| ||||| | | |||||| | || || | |||||| || | ||| || |||
Sbjct: 393 gggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgcaacacntggttc 334
Query: 1040 aaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcag 1099
||||| || || || ||||| |||||||| || ||||| |||| ||| || ||||| |||
Sbjct: 333 aaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttgggcatacag 274
Query: 1100 tagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaaca 1159
|| || || ||||||||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 273 taaatggaccgccagcctcgagtgtgcatcttgaatccagtcagaatgtcctctgtgact 214
Query: 1160 gaaccatagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctg 1219
|| ||||||||||| |||| ||| ||||||| || |||||||| ||||| |||||||||
Sbjct: 213 gatccatagatccatccaagctcttttccccattccgttttgtcttcatatccacagctg 154
Query: 1220 atgacatgaatagc 1233
||||||||||||||
Sbjct: 153 atgacatgaatagc 140
>gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_157_H10 5' similar to Arabidopsis thaliana sequence
At4g18780 cellulose synthase catalytic subunit (IRX1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 477
Score = 147 bits (74), Expect = 4e-033
Identities = 200/240 (83%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 1001 atttcaatggaaccaagagcccaccgaagcacttgattcaaacgatccgaaaggttgata 1060
|||||||| ||||| | ||||| ||||| ||||| | || |||||| || || ||||||
Sbjct: 358 atttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctgatagattgata 299
Query: 1061 ggagcagatcccttgaaagctggtcgcttaggcatgcagtagattgatcgccagcctcga 1120
|||||||| |||||||| |||||| ||| ||||||||||| || || ||||| |||||
Sbjct: 298 ggagcagaccccttgaatgctggtnncttgggcatgcagtaaatggagcgccaccctcg- 240
Query: 1121 gca-tgcatcttgaatccggtgagaatgtcttctgtaacagaaccatagatccacccaat 1179
||| ||||||||||| || || |||||||||||||| ||||||||||||||||| || |
Sbjct: 239 gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccatagatccatccgac 180
Query: 1180 ctcagttccccagtcagttttgtcctcatagccacagctgatgacatgaatagcttcttt 1239
||| | ||||| || ||||| || || |||||||||||||| ||||| |||||||||||
Sbjct: 179 ctctttcccccattcggttttctcttcgtagccacagctgatcacatgtatagcttcttt 120
>gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_F09_A029 5', mRNA sequence
Length = 802
Score = 145 bits (73), Expect = 2e-032
Identities = 207/249 (83%), Gaps = 2/249 (0%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 250 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 191
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 190 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 131
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 130 gagcgccatcctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 72
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgac 1224
||||||||| || | ||| | ||||| || ||||| || || |||||||||||||| ||
Sbjct: 71 atagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgatcac 12
Query: 1225 atgaatagc 1233
||| |||||
Sbjct: 11 atgtatagc 3
Score = 52.0 bits (26), Expect = 2e-004
Identities = 113/142 (79%)
Strand = Plus / Minus
Query: 617 gtgacagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggca 676
|||||||| ||| | |||||||| || || | ||||| || ||||| || || || |||
Sbjct: 622 gtgacagtaaagttggtgtcgatgcccgccaataccttgagaagaccttgaaaaactgca 563
Query: 677 aataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatca 736
|| ||||| ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 562 aaaaaatgagcagagactcctccaatcacccaaaactgttcgttcctccaccattcttcg 503
Query: 737 atgccaacaccactccacctca 758
|||| || |||||||| ||||
Sbjct: 502 atgctcactccactccatctca 481
Score = 44.1 bits (22), Expect = 0.041
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 445 cttcccgaaaagaggtccccatgactggta 474
|||||| || ||||||||||||||||||||
Sbjct: 791 cttcccaaacagaggtccccatgactggta 762
>gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus taeda cDNA clone COLD1_9_H07_A029
5', mRNA sequence
Length = 853
Score = 141 bits (71), Expect = 2e-031
Identities = 211/255 (82%), Gaps = 2/255 (0%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 273 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 214
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 213 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 154
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 153 gagcgccatcctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 95
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgatgac 1224
||||||||| || | ||| | ||||| || ||||| || || |||||||| |||| ||
Sbjct: 94 atagatccatccgacctctttcccccattcggttttctcttcgtagccacaaatgatcac 35
Query: 1225 atgaatagcttcttt 1239
||| |||||||||||
Sbjct: 34 atgtatagcttcttt 20
Score = 52.0 bits (26), Expect = 2e-004
Identities = 113/142 (79%)
Strand = Plus / Minus
Query: 617 gtgacagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggca 676
|||||||| ||| | |||||||| || || | ||||| || ||||| || || || |||
Sbjct: 645 gtgacagtaaagttggtgtcgatgcccgccaataccttgagaagaccttgaaaaactgca 586
Query: 677 aataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatca 736
|| ||||| ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 585 aaaaaatgagcagagactcctccaatcacccaaaactgttcgttcctccaccattcttcg 526
Query: 737 atgccaacaccactccacctca 758
|||| || |||||||| ||||
Sbjct: 525 atgctcactccactccatctca 504
Score = 44.1 bits (22), Expect = 0.041
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 445 cttcccgaaaagaggtccccatgactggta 474
|||||| || ||||||||||||||||||||
Sbjct: 814 cttcccaaacagaggtccccatgactggta 785
>gb|BQ701215.1|BQ701215 NXSI_023_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_023_H05 5' similar to Arabidopsis thaliana
sequence At4g18780 cellulose synthase catalytic subunit
(IRX1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 492
Score = 137 bits (69), Expect = 4e-030
Identities = 197/237 (83%), Gaps = 2/237 (0%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 238 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 179
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 178 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 119
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 118 gagcgccaccctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 60
Query: 1165 atagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctgat 1221
||||||||| || | ||| | ||||| || ||||| || || ||||||||||||||
Sbjct: 59 atagatccatccgacctctttcccccattcggttttctcttcgtagccacagctgat 3
>gb|AA556640.1|AA556640 495 Loblolly pine C Pinus taeda cDNA clone 2C7G, mRNA sequence
Length = 537
Score = 135 bits (68), Expect = 1e-029
Identities = 265/332 (79%)
Strand = Plus / Minus
Query: 2093 ttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttgaact 2152
|||||||||||||||| | |||||||||||||||| ||||| ||||| | | ||||| |
Sbjct: 352 ttgaattcttcatattntntcttcatggcccggcgntctttgacaaaggtgggttgaaat 293
Query: 2153 ttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctctatg 2212
||||| |||| || ||||||||||||| || || ||| ||||| | |||||| |||
Sbjct: 292 ttgtccttcagatagtcaattttctgagagaaatagatttcgggagcgcgaggctcaatg 233
Query: 2213 ttgtacttcttacagaacggaacccattttctagcaaactctgaagtttcagagagagca 2272
| | | ||||| ||||| || ||||||||||| ||||| ||||| || ||||||||||
Sbjct: 232 tcgaatttcttgcagaatggtacccattttctggcaaattctgaggtctcagagagagat 173
Query: 2273 tcaaaagtcagcatagcagctccatcatccgaaacatagcaagataccttgtcaaccgga 2332
|||||||| ||||| | ||||| ||||| || ||||| || || || ||||| || ||
Sbjct: 172 tcaaaagtaagcatngacgctccgtcatcagagacataacaggacacattgtctacaggg 113
Query: 2333 taatcgacagcaaggatggaaagcacagtatttgcagtgacaagaggaggctccttcata 2392
|| || || | |||||| || | || ||||| ||||| || | ||||||||||||||
Sbjct: 112 tagtctactgaaaggattgataatactgtattggcagtaaccaaaggaggctccttcagt 53
Query: 2393 ggatccacagtactgacaaagatatcaacagg 2424
|||||||||||||| ||||||| ||||||||
Sbjct: 52 ggatccacagtactcacaaagaggtcaacagg 21
>gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_17_B06_A022 5', mRNA sequence
Length = 579
Score = 133 bits (67), Expect = 6e-029
Identities = 286/359 (79%)
Strand = Plus / Minus
Query: 824 ctaatctttgggatgatgaacttcccagtgagaagacaaactgctggcaatatgcagtac 883
||||||| ||| || || |||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 359 ctaatctgtggtataataaacttcccagtgagaagacaaatagctggcaatgtgcaataa 300
Query: 884 aggaggagcgggattgatgtgagtggataaattgttgtgttgatataagcaaatctctcc 943
| | | ||||| || |||| ||||||| ||| ||||| || || || | ||||||
Sbjct: 299 accaccaaagggatagaagtgatgggataaactgtagtgtttatgtatgctagcctctcc 240
Query: 944 aggaatttaagccgacctccatagccataccatatgggacaatgcctgctgaaaagaatt 1003
|| |||| |||| || ||||| |||||||| || |||||||| | ||||| |||||||
Sbjct: 239 agccatttcagccttccaccataaccataccaaattggacaatgacggctgagaagaatt 180
Query: 1004 tcaatggaaccaagagcccaccgaagcacttgattcaaacgatccgaaaggttgatagga 1063
|||| ||||| | ||||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 179 tcaacagaacccaatgcccatcgaagtacttggttcaaacgatcagaaagatttatagga 120
Query: 1064 gcagatcccttgaaagctggtcgcttaggcatgcagtagattgatcgccagcctcgagca 1123
||||| || ||||| || || || |||||||||||| || |||| |||||| ||||||
Sbjct: 119 gcagaccctttgaatgcagggcgaggaggcatgcagtaaatggatctccagccacgagca 60
Query: 1124 tgcatcttgaatccggtgagaatgtcttctgtaacagaaccatagatccacccaatctc 1182
||||| || ||||| || | ||| ||||| || | ||||||||| ||||| ||||||||
Sbjct: 59 tgcattttaaatccagttaaaatatcttccgtcaaagaaccataaatccaaccaatctc 1
Score = 89.7 bits (45), Expect = 8e-016
Identities = 114/137 (83%)
Strand = Plus / Minus
Query: 617 gtgacagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggca 676
|||||||||||| | ||||| ||||| ||||| || ||||| | ||||||| ||| |||
Sbjct: 566 gtgacagtgaagtttgtgtcaataccggcaaggactttcagcaacccctggacgactgca 507
Query: 677 aataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatca 736
|| | ||| || || | ||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 506 aagagatgagctgacacacctccaatgacccagaattgttcattcctccaccattcatca 447
Query: 737 atgccaacaccactcca 753
|| ||||| ||||||||
Sbjct: 446 ataccaaccccactcca 430
>gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clone RS02F11 similar to CELLULOSE
SYNTHASE, mRNA sequence
Length = 420
Score = 129 bits (65), Expect = 9e-028
Identities = 176/213 (82%)
Strand = Plus / Minus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | | |||||||| || ||||| |||||
Sbjct: 213 tagccataccaaattggacaatgcctgctcagtaaaatttcaacagagccaagggcccat 154
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
|| |||||||||||||||||||| ||||| ||||| || ||||| |||||||| || ||
Sbjct: 153 cggagcacttgattcaaacgatctgaaagattgattggtgcagaacccttgaatgcagga 94
Query: 1085 cgcttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgaga 1144
|| |||||||||||| ||||| |||||||||||||||||| || || || || | |
Sbjct: 93 cgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaacccagtcaaa 34
Query: 1145 atgtcttctgtaacagaaccatagatccaccca 1177
|| |||||||| ||||| ||||| |||||||||
Sbjct: 33 atatcttctgtgacagagccataaatccaccca 1
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 836 atgatgaacttcccagtgagaagacaaactgctggca 872
||||| |||||||| || ||||||||||| |||||||
Sbjct: 342 atgataaacttccctgtaagaagacaaacagctggca 306
>gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRNA, partial cds
Length = 1333
Score = 129 bits (65), Expect = 9e-028
Identities = 160/189 (84%), Gaps = 2/189 (1%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 251 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 192
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct: 191 tctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcagtaaatg 132
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 131 gagcgccatcctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 73
Query: 1165 atagatcca 1173
|||||||||
Sbjct: 72 atagatcca 64
Score = 58.0 bits (29), Expect = 3e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 362 atggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggggtacaggtggaca 421
||||| ||||||||||| ||| |||||||| || ||||||||||| |||| |||| |
Sbjct: 875 atggtaggcgtgcggttttgccgacccatgagacctttgaggaagggatacaaatggaga 816
Query: 422 atcacccagaacgcaaagaagagcttcccgaaaagaggtccccatgactggta 474
|||||||| | | || || | |||||| || ||||||||||||||||||||
Sbjct: 815 atcacccatactgagaaaaacaacttcccaaacagaggtccccatgactggta 763
Score = 52.0 bits (26), Expect = 2e-004
Identities = 113/142 (79%)
Strand = Plus / Minus
Query: 617 gtgacagtgaagctcgtgtcgataccagcaagcaccttcaggagaccctggaagacggca 676
|||||||| ||| | |||||||| || || | ||||| || ||||| || || || |||
Sbjct: 623 gtgacagtaaagttggtgtcgatgcccgccaataccttgagaagaccttgaaaaactgca 564
Query: 677 aataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattcatca 736
|| ||||| ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 563 aaaaaatgagcagagactcctccaatcacccaaaactgttcgttcctccaccattcttcg 504
Query: 737 atgccaacaccactccacctca 758
|||| || |||||||| ||||
Sbjct: 503 atgctcactccactccatctca 482
>gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDNA clone 1NAB10D, mRNA sequence
Length = 546
Score = 127 bits (64), Expect = 4e-027
Identities = 184/222 (82%), Gaps = 2/222 (0%)
Strand = Plus / Minus
Query: 1019 gcccaccgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaa 1078
||||| ||||| ||||| | || |||||| || || |||||||||||||| ||||||||
Sbjct: 518 gcccaacgaagaacttggtgcagacgatctgatagattgataggagcagaccccttgaat 459
Query: 1079 gctggtcgcttaggcatgcagtagattgatcgccagcctcgagca-tgcatcttgaatcc 1137
|||||| | | ||||||||||| || || ||||| | ||| ||| ||||||||||| ||
Sbjct: 458 gctggtntcntgggcatgcagtaaatggagcgccaccttcg-gcagtgcatcttgaaacc 400
Query: 1138 ggtgagaatgtcttctgtaacagaaccatagatccacccaatctcagttccccagtcagt 1197
|| |||||||||||||| ||||||||||||||||| || | ||| | ||||| || ||
Sbjct: 399 tgttagaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggt 340
Query: 1198 tttgtcctcatagccacagctgatgacatgaatagcttcttt 1239
||| || || |||||||||||||| ||||| |||||||||||
Sbjct: 339 tttctcttcgtagccacagctgatcacatgtatagcttcttt 298
>gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_H09 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 537
Score = 123 bits (62), Expect = 6e-026
Identities = 162/197 (82%)
Strand = Plus / Minus
Query: 1037 ttcaaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatg 1096
|||||||| || || || ||||| |||||||| || ||||| |||| ||| || |||
Sbjct: 336 ttcaaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttnnncata 277
Query: 1097 cagtagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgta 1156
||||| || || ||||| |||||| |||||||||||||| || |||||||| |||||
Sbjct: 276 cagtaaatggaccgccannctcgagtgtgcatcttgaatccagtcagaatgtcctctgtg 217
Query: 1157 acagaaccatagatccacccaatctcagttccccagtcagttttgtcctcatagccacag 1216
|| || ||||||||||| |||| ||| ||||||| || |||||||| ||||| ||||||
Sbjct: 216 actgatccatagatccatccaagctcttttccccattccgttttgtcttcatatccacag 157
Query: 1217 ctgatgacatgaatagc 1233
|||||||||||||||||
Sbjct: 156 ctgatgacatgaatagc 140
>gb|BV079715.1| Pp_CesA3 Pinus pinaster megagametophytes Pinus pinaster STS genomic,
sequence tagged site
Length = 488
Score = 121 bits (61), Expect = 2e-025
Identities = 159/189 (84%), Gaps = 2/189 (1%)
Strand = Plus / Minus
Query: 986 tgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattcaaacga 1045
||||||||||| | |||||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct: 443 tgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgcagacga 384
Query: 1046 tccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcagtagatt 1105
|| || || |||||||||||||| |||||||| || |||| ||| ||||||||||| ||
Sbjct: 383 tctgatagattgataggagcagaccccttgaatgccggtctcttgggcatgcagtaaatg 324
Query: 1106 gatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgtaacagaacc 1164
|| ||||| ||||| ||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct: 323 gagcgccaccctcg-gcagtgcatcttgaaacctgttagaatgtcttctgtcacagaacc 265
Query: 1165 atagatcca 1173
|||||||||
Sbjct: 264 atagatcca 256
Score = 50.1 bits (25), Expect = 7e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1187 ccccagtcagttttgtcctcatagccacagctgatgacatgaatagcttcttt 1239
||||| || ||||| || || |||||||||||||| ||||| |||||||||||
Sbjct: 118 ccccattcggttttctcttcgtagccacagctgatcacatgtatagcttcttt 66
>gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_D12 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 450
Score = 117 bits (59), Expect = 3e-024
Identities = 176/215 (81%)
Strand = Plus / Minus
Query: 968 ccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccga 1027
|||||||| || |||||||||||||| | ||||||||| | || || | |||||| ||
Sbjct: 235 ccataccaaattggacaatgcctgctaagaagaatttccacagagcccaaagcccatcgc 176
Query: 1028 agcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgc 1087
|| ||||| |||| |||||| ||||| || || ||||||||||||||||| || || ||
Sbjct: 175 agaacttggttcagacgatcagaaagattaattggagcagatcccttgaatgcagggcga 116
Query: 1088 ttaggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatg 1147
|||||| ||||| ||||||||||| || ||||||||||| || || || || | |||
Sbjct: 115 ggaggcatacagtatattgatcgccaaccacgagcatgcattttaaagccagtcaaaata 56
Query: 1148 tcttctgtaacagaaccatagatccacccaatctc 1182
|||||||| ||||||||||| ||||| ||||||||
Sbjct: 55 tcttctgtcacagaaccatatatccaaccaatctc 21
>gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 5', mRNA sequence
Length = 730
Score = 117 bits (59), Expect = 3e-024
Identities = 122/143 (85%)
Strand = Plus / Minus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | |||||||||| |||||||| |||||
Sbjct: 150 tagccataccaaattggacaatgcctgctcagtagaatttcaacagaaccaagggcccat 91
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
|| |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||
Sbjct: 90 cggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaatgcagga 31
Query: 1085 cgcttaggcatgcagtagattga 1107
|| |||||||||||| |||||
Sbjct: 30 cgtgcaggcatgcagtatattga 8
Score = 65.9 bits (33), Expect = 1e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 668 aagacggcaaataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccac 727
||||||||||| | ||| || || | ||| ||||| ||||| || ||||| |||||||||
Sbjct: 447 aagacggcaaacagatgtgctgatacacctccaataacccaaaattgctcattcctccac 388
Query: 728 cattcatcaatgccaac 744
|||||||||||||||||
Sbjct: 387 cattcatcaatgccaac 371
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 836 atgatgaacttcccagtgagaagacaaactgctggca 872
||||| |||||||| || ||||||||||| |||||||
Sbjct: 279 atgataaacttccctgtaagaagacaaacagctggca 243
>gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A07_A029 3', mRNA sequence
Length = 610
Score = 115 bits (58), Expect = 1e-023
Identities = 245/306 (80%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 920 gtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccatatg 979
||||||||||| |||||||| || || |||| || | || |||||||||||||| ||
Sbjct: 306 gtgttgatataggcaaatctttcaagccatttcagacctcccccatagccataccagatt 365
Query: 980 ggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattc 1039
|| ||||| ||||| | | |||||| | || || | |||||| || | ||| || |||
Sbjct: 366 gggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgcaacacctggttc 425
Query: 1040 aaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcag 1099
||||| || || || ||||| |||||||| || ||||| |||| ||| || ||||| |||
Sbjct: 426 aaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttgggcatacag 485
Query: 1100 tagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaaca 1159
|| || || ||||||||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 486 taaatggaccgccagcctcgagtgtgcatcttgaatccagtcagaatgtcctctgtgact 545
Query: 1160 gaaccatagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctg 1219
|| ||||||||||| |||| ||| ||||||| || | |||||| ||||| |||||||||
Sbjct: 546 gatccatagatccatccaagctcttttccccattccg-tttgtcttcatatccacagctg 604
Query: 1220 atgaca 1225
||||||
Sbjct: 605 atgaca 610
Score = 87.7 bits (44), Expect = 3e-015
Identities = 98/116 (84%)
Strand = Plus / Plus
Query: 674 gcaaataaatgcgcagaaataccaccaatgacccagaactgctcgttcctccaccattca 733
||||| ||||| ||||||| || ||||| ||||||||||| || || | |||||||||
Sbjct: 60 gcaaaaaaatgtgcagaaacccctccaataacccagaactgttcatttcgccaccattct 119
Query: 734 tcaatgccaacaccactccacctcatctcaaggataccagtggcaaagattgagat 789
||||||| || |||||||||||||| || || |||||||||||||| ||||||||
Sbjct: 120 tcaatgctcactccactccacctcatttccagaataccagtggcaaaaattgagat 175
>gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_100_C02 5' similar to Arabidopsis thaliana sequence
At5g05170 cellulose synthase catalytic subunit (Ath-B)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 113 bits (57), Expect = 5e-023
Identities = 142/172 (82%)
Strand = Plus / Minus
Query: 1062 gagcagatcccttgaaagctggtcgcttaggcatgcagtagattgatcgccagcctcgag 1121
||||||| || ||||| |||| ||| || ||||| ||||| || || |||||| |||||
Sbjct: 366 gagcagaccctttgaatgctgctcgtttgggcatacagtaaatggaccgccagnntcgag 307
Query: 1122 catgcatcttgaatccggtgagaatgtcttctgtaacagaaccatagatccacccaatct 1181
|||||||||||||| || ||||||| |||| || || ||||||||||| |||| ||
Sbjct: 306 tgtgcatcttgaatccagtcagaatgtnnnctgtgactgatccatagatccatccaagct 247
Query: 1182 cagttccccagtcagttttgtcctcatagccacagctgatgacatgaatagc 1233
| ||||||| || |||||||| ||||| |||||||||||||||||||||||
Sbjct: 246 cttttccccattccgttttgtcttcatatccacagctgatgacatgaatagc 195
>gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_D11_A029 5', mRNA sequence
Length = 769
Score = 111 bits (56), Expect = 2e-022
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 2090 actttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttga 2149
|||||||| ||||||||||||| |||||||| || || ||||| ||||| | | |||
Sbjct: 453 actttgaactcttcatattctcgtttcatggcacgccgctcttttacaaaggtcggttgc 394
Query: 2150 actttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctct 2209
|| |||||||||| |||||||||||| |||| |||||| | || || |||| |||||||
Sbjct: 393 accttgtctttcaggtaatcaattttttgagaaaagtaaaaatcgggggcccgaggctct 334
Query: 2210 atgttgtacttcttacagaacggaacccattttctagcaaactctgaagtttcagagaga 2269
|| ||||||| || ||||| ||||||||||| | ||||||||||| ||||| | |
Sbjct: 333 atactgtactttttgcagaaaggaacccatttccgggcaaactctgaggtttctgtcatt 274
Query: 2270 gcatcaaaagtcagcatagcagctccatcatccgaaacatagcaagataccttgtcaacc 2329
| ||| || || ||||| | |||||||| ||||| |||||||| |||||| |||| ||
Sbjct: 273 gaatcgaatgtgagcatggatgctccatcgtccgatacatagcacgataccctgtccaca 214
Query: 2330 ggataatcgacagcaaggatggaaagcacagtatttgcagtgacaagaggaggctccttc 2389
|| || || | || ||||| || || |||||||| || || | ||||||||||| |||
Sbjct: 213 gggtagtccgcggccaggatagagagaacagtattagctgtaatcagaggaggctctttc 154
Query: 2390 ataggatccacagtactgacaaagatatcaac 2421
| |||||||| ||||| ||||||| ||||||
Sbjct: 153 agtggatccactgtactcacaaagaaatcaac 122
Score = 54.0 bits (27), Expect = 4e-005
Identities = 141/179 (78%)
Strand = Plus / Minus
Query: 1856 ttcatggcaccagccttcttgtgatgttggaatccaggacgtttttcacgagacacataa 1915
||||||||||| || |||||||| || || ||||||| | || |||||||| |||||
Sbjct: 687 ttcatggcaccggctttcttgtggtgctgatatccaggtctcttctcacgagaaacatag 628
Query: 1916 accaaacgaggaagttcattgccttcaacgtcaagccctccactgtgacccaggaaaacc 1975
|| | |||||||| || || || |||| ||| | |||||||| ||||| || |||
Sbjct: 627 acaaggcgaggaagctcgttcccctcaatatcatgggctccactgcttcccagaaacacc 568
Query: 1976 tgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttgcat 2034
|||||||||||||| || || | |||||||||||| ||||| || || ||||| |||||
Sbjct: 567 tgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgcat 509
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 111 bits (56), Expect = 2e-022
Identities = 263/332 (79%)
Strand = Plus / Minus
Query: 2090 actttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttga 2149
|||||||| |||||||| |||| |||||||| || || ||||| ||||| | | |||
Sbjct: 434 actttgaactcttcatactctcgtttcatggcacgccgctcttttacaaaggtcggttgc 375
Query: 2150 actttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctct 2209
|| |||||||||| ||||||||||||||||| |||||| | || || |||| |||||||
Sbjct: 374 accttgtctttcaggtaatcaattttctgagaaaagtaaaaatcgggggcccgaggctct 315
Query: 2210 atgttgtacttcttacagaacggaacccattttctagcaaactctgaagtttcagagaga 2269
|| ||||||| || ||||| ||||||||||| | ||||||||||| ||||| | |
Sbjct: 314 atactgtactttttgcagaaaggaacccatttccgggcaaactctgaggtttctgtcatt 255
Query: 2270 gcatcaaaagtcagcatagcagctccatcatccgaaacatagcaagataccttgtcaacc 2329
| ||| || || ||||| | |||||||| ||||| |||||||| |||||| |||| ||
Sbjct: 254 gaatcgaatgtgagcatggatgctccatcgtccgatacatagcacgataccctgtccaca 195
Query: 2330 ggataatcgacagcaaggatggaaagcacagtatttgcagtgacaagaggaggctccttc 2389
|| || || | || ||||| || || |||||||| || || | ||||||||||| |||
Sbjct: 194 gggtagtccgcggccaggatagagagaacagtattagctgtaatcagaggaggctctttc 135
Query: 2390 ataggatccacagtactgacaaagatatcaac 2421
| |||||||| ||||| ||||||| ||||||
Sbjct: 134 agtggatccactgtactcacaaagaaatcaac 103
Score = 93.7 bits (47), Expect = 5e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| |||||||| || |||||||| ||||| ||| ||| ||||||||
Sbjct: 941 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 882
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagg 1701
|| |||||||| |||||||||||||| |||| | |||||||||||| || ||||||||
Sbjct: 881 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgagg 823
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 395 cccttgaggaaggggtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaa 454
|||||||||||||| ||||| || | ||||||||| | || ||||| ||||| || |||
Sbjct: 2153 cccttgaggaagggatacagatgcaatatcacccagcaggcgaagaatagctttccaaaa 2094
Query: 455 agaggtccccatgactggta 474
|| |||||||||||||||||
Sbjct: 2093 agcggtccccatgactggta 2074
Score = 54.0 bits (27), Expect = 4e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 1964 cccaggaaaacctgaatcattccaggatggtccctagtattgttcccaggccaaggtgta 2023
||||| || ||||||||||||||||| || || | |||||||||||| ||||| || ||
Sbjct: 560 cccagaaacacctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgtt 501
Query: 2024 ccatcttgcat 2034
||||| |||||
Sbjct: 500 ccatcctgcat 490
Score = 52.0 bits (26), Expect = 2e-004
Identities = 226/290 (77%), Gaps = 2/290 (0%)
Strand = Plus / Minus
Query: 918 ttgtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccata 977
||||||||||||| || ||||| || || |||| || |||||||||| ||||||| |
Sbjct: 1630 ttgtgttgatataggccaatctttcaagccattttagattacctccataggcataccaga 1571
Query: 978 tgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgat 1037
||||||||||| |||| | |||||| |||||||| | ||||| ||||| || || |
Sbjct: 1570 gaggacaatgcctactgaggaaaatttctatggaacccaacgcccaacgaagaacctggt 1511
Query: 1038 tcaaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgc 1097
||||||||| || | || |||||||| ||||| ||||| || || | ||||||||
Sbjct: 1510 gcaaacgatctgataaattaataggagctgatcctttgaatgccggcctgggaggcatgc 1451
Query: 1098 agtagattgatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgta 1156
|||| | |||||||| || || ||| ||||| ||||| || || || || || |||||
Sbjct: 1450 agtataccgatcgccaaccacg-gcagtgcattttgaagcctgtcaggatatcctctgtc 1392
Query: 1157 acagaaccatagatccacccaatctcagttccccagtcagttttgtcctc 1206
|| |||||||| ||||| || ||||| ||||||| |||||||| |||||
Sbjct: 1391 actgaaccatatatccatccgatctcctttccccattcagttttctcctc 1342
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 698 ccaatgacccagaactgctcgttcctcca 726
||||||||||||||||| ||||| |||||
Sbjct: 1850 ccaatgacccagaactgttcgtttctcca 1822
>gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus pinaster cDNA clone PPJM13, mRNA
sequence
Length = 520
Score = 109 bits (55), Expect = 8e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 1091 ggcatgcagtagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtct 1150
||||| ||||| || || |||||||||||| |||||||||||||| || ||||||||
Sbjct: 506 ggcatacagtaaatggaccgccagcctcgactgtgcatcttgaatccagtcagaatgtcc 447
Query: 1151 tctgtaacagaaccatagatccacccaatctcagttccccagtcagttttgtcctcatag 1210
||||| || || ||||||||||| |||| ||| ||||||| || |||||||| |||||
Sbjct: 446 tctgtgactgatccatagatccatccaagctcttttccccattccgttttgtcttcatat 387
Query: 1211 ccacagctgatgacatgaatagc 1233
|| ||||||||||||||||||||
Sbjct: 386 ccccagctgatgacatgaatagc 364
>gb|DN609460.1|DN609460 EST962510 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAD15, mRNA sequence
Length = 400
Score = 109 bits (55), Expect = 8e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | | |||||||| |||||||| |||||
Sbjct: 218 tagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagggcccat 277
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
|| |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||
Sbjct: 278 cggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaatgcagga 337
Query: 1085 cgcttaggcatgcagtagattga 1107
|| |||||||||||| |||||
Sbjct: 338 cgtgcaggcatgcagtatattga 360
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 836 atgatgaacttcccagtgagaagacaaactgctggca 872
||||| |||||||| || ||||||||||| |||||||
Sbjct: 89 atgataaacttccctgtaagaagacaaacagctggca 125
>gb|DT627755.1|DT627755 EST1156504 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCQ29 5' end, mRNA sequence
Length = 376
Score = 109 bits (55), Expect = 8e-022
Identities = 121/143 (84%)
Strand = Plus / Minus
Query: 965 tagccataccatatgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccac 1024
||||||||||| || |||||||||||||| | | |||||||| |||||||| |||||
Sbjct: 159 tagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagggcccat 100
Query: 1025 cgaagcacttgattcaaacgatccgaaaggttgataggagcagatcccttgaaagctggt 1084
|| |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||
Sbjct: 99 cggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaatgcagga 40
Query: 1085 cgcttaggcatgcagtagattga 1107
|| |||||||||||| |||||
Sbjct: 39 cgtgcaggcatgcagtatattga 17
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 836 atgatgaacttcccagtgagaagacaaactgctggca 872
||||| |||||||| || ||||||||||| |||||||
Sbjct: 288 atgataaacttccctgtaagaagacaaacagctggca 252
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 103 bits (52), Expect = 5e-020
Identities = 262/332 (78%)
Strand = Plus / Minus
Query: 2090 actttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttga 2149
|||||||| |||||||| |||| |||||||| || || ||||| ||||| | | |||
Sbjct: 1361 actttgaactcttcatactctcgtttcatggcacgccgctcttttacaaaggtcggttgc 1302
Query: 2150 actttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctct 2209
|| |||||||||| |||||||||||| |||| |||||| | || || |||| |||||||
Sbjct: 1301 accttgtctttcaggtaatcaattttttgagaaaagtaaaaatcgggggcccgaggctct 1242
Query: 2210 atgttgtacttcttacagaacggaacccattttctagcaaactctgaagtttcagagaga 2269
|| ||||||| || ||||| ||||||||||| | ||||||||||| ||||| | |
Sbjct: 1241 atactgtactttttgcagaaaggaacccatttccgggcaaactctgaggtttctgtcatt 1182
Query: 2270 gcatcaaaagtcagcatagcagctccatcatccgaaacatagcaagataccttgtcaacc 2329
| ||| || || ||||| | |||||||| ||||| |||||||| |||||| |||| ||
Sbjct: 1181 gaatcgaatgtgagcatggatgctccatcgtccgatacatagcacgataccctgtccaca 1122
Query: 2330 ggataatcgacagcaaggatggaaagcacagtatttgcagtgacaagaggaggctccttc 2389
|| || || | || ||||| || || |||||||| || || | ||||||||||| |||
Sbjct: 1121 gggtagtccgcggccaggatagagagaacagtattagctgtaatcagaggaggctctttc 1062
Query: 2390 ataggatccacagtactgacaaagatatcaac 2421
| |||||||| ||||| ||||||| ||||||
Sbjct: 1061 agtggatccactgtactcacaaagaaatcaac 1030
Score = 93.7 bits (47), Expect = 5e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| |||||||| || |||||||| ||||| ||| ||| ||||||||
Sbjct: 1868 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 1809
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagg 1701
|| |||||||| |||||||||||||| |||| | |||||||||||| || ||||||||
Sbjct: 1808 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgagg 1750
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 395 cccttgaggaaggggtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaa 454
|||||||||||||| ||||| || | ||||||||| | || ||||| ||||| || |||
Sbjct: 3080 cccttgaggaagggatacagatgcaatatcacccagcaggcgaagaatagctttccaaaa 3021
Query: 455 agaggtccccatgactggta 474
|| |||||||||||||||||
Sbjct: 3020 agcggtccccatgactggta 3001
Score = 54.0 bits (27), Expect = 4e-005
Identities = 141/179 (78%)
Strand = Plus / Minus
Query: 1856 ttcatggcaccagccttcttgtgatgttggaatccaggacgtttttcacgagacacataa 1915
||||||||||| || |||||||| || || ||||||| | || |||||||| |||||
Sbjct: 1595 ttcatggcaccggctttcttgtggtgctgatatccaggtctcttctcacgagaaacatag 1536
Query: 1916 accaaacgaggaagttcattgccttcaacgtcaagccctccactgtgacccaggaaaacc 1975
|| | |||||||| || || || |||| ||| | |||||||| ||||| || |||
Sbjct: 1535 acaaggcgaggaagctcgttcccctcaatatcatgggctccactgcttcccagaaacacc 1476
Query: 1976 tgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttgcat 2034
|||||||||||||| || || | |||||||||||| ||||| || || ||||| |||||
Sbjct: 1475 tgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgcat 1417
Score = 52.0 bits (26), Expect = 2e-004
Identities = 226/290 (77%), Gaps = 2/290 (0%)
Strand = Plus / Minus
Query: 918 ttgtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccata 977
||||||||||||| || ||||| || || |||| || |||||||||| ||||||| |
Sbjct: 2557 ttgtgttgatataggccaatctttcaagccattttagattacctccataggcataccaga 2498
Query: 978 tgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgat 1037
||||||||||| |||| | |||||| |||||||| | ||||| ||||| || || |
Sbjct: 2497 gaggacaatgcctactgaggaaaatttctatggaacccaatgcccaacgaagaacctggt 2438
Query: 1038 tcaaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgc 1097
||||||||| || | || |||||||| ||||| ||||| || || | ||||||||
Sbjct: 2437 gcaaacgatctgataaattaataggagctgatcctttgaatgccggcctgggaggcatgc 2378
Query: 1098 agtagattgatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgta 1156
|||| | |||||||| || || ||| ||||| ||||| || || || || || |||||
Sbjct: 2377 agtataccgatcgccaaccacg-gcagtgcattttgaagcctgtcaggatatcctctgtc 2319
Query: 1157 acagaaccatagatccacccaatctcagttccccagtcagttttgtcctc 1206
|| |||||||| ||||| || ||||| ||||||| |||||||| |||||
Sbjct: 2318 actgaaccatatatccatccgatctcctttccccattcagttttctcctc 2269
Score = 50.1 bits (25), Expect = 7e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 2502 accactttgggaactgatccaaaatccaggacaaagcaaaccagatctc 2550
||||||| ||||||||||| | ||||||||| || || |||||||||||
Sbjct: 949 accacttggggaactgatcaagaatccaggagaaggcgaaccagatctc 901
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 698 ccaatgacccagaactgctcgttcctcca 726
||||||||||||||||| ||||| |||||
Sbjct: 2777 ccaatgacccagaactgttcgtttctcca 2749
Score = 42.1 bits (21), Expect = 0.16
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 3257 ctccctttgtggcgcttgtacttagtcttgcactgcgggca 3297
||||||||||| ||| ||||| |||||||||||| |||||
Sbjct: 332 ctccctttgtgacgcctgtaccgagtcttgcactgagggca 292
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 97.6 bits (49), Expect = 3e-018
Identities = 142/173 (82%)
Strand = Plus / Minus
Query: 2090 actttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttga 2149
|||||||| |||||||| |||| |||||||| || || ||||| ||||| | | |||
Sbjct: 213 actttgaactcttcatactctcgtttcatggcacgccgctcttttacaaaggtcggttgc 154
Query: 2150 actttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctct 2209
|| |||||||||| ||||||||||||||||| |||||| | || || |||| |||||||
Sbjct: 153 accttgtctttcaggtaatcaattttctgagaaaagtaaaaatcgggggcccgaggctct 94
Query: 2210 atgttgtacttcttacagaacggaacccattttctagcaaactctgaagtttc 2262
|| ||||||| || ||||| ||||||||||| | ||||||||||| |||||
Sbjct: 93 atactgtactttttgcagaaaggaacccatttccgggcaaactctgaggtttc 41
Score = 93.7 bits (47), Expect = 5e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| |||||||| || |||||||| ||||| ||| ||| ||||||||
Sbjct: 720 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 661
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagg 1701
|| |||||||| |||||||||||||| |||| | |||||||||||| || ||||||||
Sbjct: 660 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgagg 602
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 395 cccttgaggaaggggtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaa 454
|||||||||||||| ||||| || | ||||||||| | || ||||| ||||| || |||
Sbjct: 1932 cccttgaggaagggatacagatgcaatatcacccagcaggcgaagaatagctttccaaaa 1873
Query: 455 agaggtccccatgactggta 474
|| |||||||||||||||||
Sbjct: 1872 agcggtccccatgactggta 1853
Score = 61.9 bits (31), Expect = 2e-007
Identities = 142/179 (79%)
Strand = Plus / Minus
Query: 1856 ttcatggcaccagccttcttgtgatgttggaatccaggacgtttttcacgagacacataa 1915
||||||||||| || |||||||| || || ||||||| | ||||||||||| |||||
Sbjct: 447 ttcatggcaccggctttcttgtggtgctgatatccaggtctcttttcacgagaaacatag 388
Query: 1916 accaaacgaggaagttcattgccttcaacgtcaagccctccactgtgacccaggaaaacc 1975
|| | |||||||| || || || |||| ||| | |||||||| ||||| || |||
Sbjct: 387 acaaggcgaggaagctcgttcccctcaatatcatgggctccactgcttcccagaaacacc 328
Query: 1976 tgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttgcat 2034
|||||||||||||| || || | |||||||||||| ||||| || || ||||| |||||
Sbjct: 327 tgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgcat 269
Score = 52.0 bits (26), Expect = 2e-004
Identities = 226/290 (77%), Gaps = 2/290 (0%)
Strand = Plus / Minus
Query: 918 ttgtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccata 977
||||||||||||| || ||||| || || |||| || |||||||||| ||||||| |
Sbjct: 1409 ttgtgttgatataggccaatctttcaagccattttagattacctccataggcataccaga 1350
Query: 978 tgggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgat 1037
||||||||||| |||| | |||||| |||||||| | ||||| ||||| || || |
Sbjct: 1349 gaggacaatgcctactgaggaaaatttctatggaacccaacgcccaacgaagaacctggt 1290
Query: 1038 tcaaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgc 1097
||||||||| || | || |||||||| ||||| ||||| || || | ||||||||
Sbjct: 1289 gcaaacgatctgataaattaataggagctgatcctttgaatgccggcctgggaggcatgc 1230
Query: 1098 agtagattgatcgccagcctcgagca-tgcatcttgaatccggtgagaatgtcttctgta 1156
|||| | |||||||| || || ||| ||||| ||||| || || || || || |||||
Sbjct: 1229 agtataccgatcgccaaccacg-gcagtgcattttgaagcctgtcaggatatcctctgtc 1171
Query: 1157 acagaaccatagatccacccaatctcagttccccagtcagttttgtcctc 1206
|| |||||||| ||||| || ||||| ||||||| |||||||| |||||
Sbjct: 1170 accgaaccatatatccatccgatctcctttccccattcagttttctcctc 1121
>gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP021G11 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 708
Score = 93.7 bits (47), Expect = 5e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| |||||||| || |||||||| ||||| ||| ||| ||||||||
Sbjct: 128 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 69
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagg 1701
|| |||||||| |||||||||||||| |||| | |||||||||||| || ||||||||
Sbjct: 68 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgagg 10
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 1161 aaccatagatccacccaatctcagttccccagtcagttttgtcctcatagccacagctga 1220
||||||| ||||| || ||||| ||||||| |||||||| ||||| || || |||||||
Sbjct: 575 aaccatatatccatccgatctcctttccccattcagttttctcctcgtatccgcagctga 516
Query: 1221 tgacatgaatagcttc 1236
|||| ||||| |||||
Sbjct: 515 tgacgtgaatggcttc 500
>gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_079_C07 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 352
Score = 93.7 bits (47), Expect = 5e-017
Identities = 104/123 (84%)
Strand = Plus / Minus
Query: 349 ccagacaacgacaatggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggg 408
||||| ||| || ||||| || || ||||||||| | |||||||| ||||||||||| ||
Sbjct: 140 ccagataaccacgatggtgggtgttcggttctgcctgcccatgagacccttgaggaaagg 81
Query: 409 gtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaaagaggtccccatga 468
|||||||| ||||| |||||||| |||||||| ||||| || || ||||| ||||||||
Sbjct: 80 atacaggtgcacaatgacccagaatgcaaagaaaagcttacccaagagaggaccccatga 21
Query: 469 ctg 471
|||
Sbjct: 20 ctg 18
>gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_A02_A029 5', mRNA sequence
Length = 741
Score = 93.7 bits (47), Expect = 5e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| |||||||| || |||||||| ||||| ||| ||| ||||||||
Sbjct: 658 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 599
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagg 1701
|| |||||||| |||||||||||||| |||| | |||||||||||| || ||||||||
Sbjct: 598 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgagg 540
Score = 85.7 bits (43), Expect = 1e-014
Identities = 124/151 (82%)
Strand = Plus / Minus
Query: 2090 actttgaattcttcatattctctcttcatggcccggcgttctttcacaaatgaagtttga 2149
|||||||| ||||| || |||| |||||||| || || ||||| ||||| | | |||
Sbjct: 151 actttgaactcttcgtactctcgtttcatggcacgccgctcttttacaaaggtcggttgc 92
Query: 2150 actttgtctttcaagtaatcaattttctgagcaaagtaccattccggagccctaggctct 2209
|| |||||||||| ||||||||||||||||| |||||| | || || |||| |||||||
Sbjct: 91 accttgtctttcaggtaatcaattttctgagaaaagtaaaaatcgggggcccgaggctct 32
Query: 2210 atgttgtacttcttacagaacggaacccatt 2240
||| ||||||| || ||||| ||||||||||
Sbjct: 31 atgctgtactttttgcagaaaggaacccatt 1
Score = 61.9 bits (31), Expect = 2e-007
Identities = 142/179 (79%)
Strand = Plus / Minus
Query: 1856 ttcatggcaccagccttcttgtgatgttggaatccaggacgtttttcacgagacacataa 1915
||||||||||| || |||||||| || || ||||||| | || |||||||| |||||
Sbjct: 385 ttcatggcaccggctttcttgtggtgctgatatccaggcctcttctcacgagaaacatag 326
Query: 1916 accaaacgaggaagttcattgccttcaacgtcaagccctccactgtgacccaggaaaacc 1975
|| | ||||||||| || || || |||| ||| | |||||||| ||||| || |||
Sbjct: 325 acaagacgaggaagctcgttcccctcaatatcatgggctccactgcttcccagaaacacc 266
Query: 1976 tgaatcattccaggatggtccctagtattgttcccaggccaaggtgtaccatcttgcat 2034
|||||||||||||| || || | |||||||||||| ||||| || || ||||| |||||
Sbjct: 265 tgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgcat 207
>gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_C12_A029 5', mRNA sequence
Length = 754
Score = 93.7 bits (47), Expect = 5e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| |||||||| || |||||||| ||||| ||| ||| ||||||||
Sbjct: 172 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 113
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagg 1701
|| |||||||| |||||||||||||| |||| | |||||||||||| || ||||||||
Sbjct: 112 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgagg 54
>dbj|BD235986.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 383
Score = 93.7 bits (47), Expect = 5e-017
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1583 ccagttcccacataaactggcccttgaatgccatcaagacctctcaagttaatatcgaaa 1642
||||| |||||||| |||||||| || |||||||| ||||| ||| ||| ||||||||
Sbjct: 347 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 288
Query: 1643 aacacagtgttcctgtttgcatatcggtcattcctatcaataccatcaaacctctgagg 1701
|| |||||||| |||||||||||||| |||| | |||||||||||| || ||||||||
Sbjct: 287 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgagg 229
>gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulose synthase genes, partial cds
Length = 1023
Score = 93.7 bits (47), Expect = 5e-017
Identities = 104/123 (84%)
Strand = Plus / Minus
Query: 349 ccagacaacgacaatggtcggcgtgcggttctgcttccccatgaggcccttgaggaaggg 408
||||| ||| || ||||| || || ||||||||| | |||||||| ||||||||||| ||
Sbjct: 850 ccagataaccacgatggtgggtgttcggttctgcctgcccatgagacccttgaggaaagg 791
Query: 409 gtacaggtggacaatcacccagaacgcaaagaagagcttcccgaaaagaggtccccatga 468
|||||||| ||||| |||||||| |||||||| ||||| || || ||||| ||||||||
Sbjct: 790 atacaggtgcacaatgacccagaatgcaaagaaaagcttacccaagagaggaccccatga 731
Query: 469 ctg 471
|||
Sbjct: 730 ctg 728
Score = 93.7 bits (47), Expect = 5e-017
Identities = 206/259 (79%)
Strand = Plus / Minus
Query: 920 gtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccatatg 979
||||||||||| |||||||| || || |||| || | || |||||||||||||| ||
Sbjct: 534 gtgttgatataggcaaatctttcaagccatttcagacctcccccatagccataccagatt 475
Query: 980 ggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattc 1039
|| ||||| ||||| | | |||||| | || || | |||||| || | ||| || |||
Sbjct: 474 gggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgcaacacctggttc 415
Query: 1040 aaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcag 1099
||||| || || || ||||| |||||||| || ||||| |||| ||| || ||||| |||
Sbjct: 414 aaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttgggcatacag 355
Query: 1100 tagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaaca 1159
|| || || ||||||||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 354 taaatggaccgccagcctcgagtgtgcatcttgaatccagtcagaatgtcctctgtgact 295
Query: 1160 gaaccatagatccacccaa 1178
|| ||||||||||| ||||
Sbjct: 294 gatccatagatccatccaa 276
>gb|AY764673.1|AY764673S1 Pinus taeda isolate 11 cellulose synthase gene, partial cds
Length = 571
Score = 93.7 bits (47), Expect = 5e-017
Identities = 206/259 (79%)
Strand = Plus / Minus
Query: 920 gtgttgatataagcaaatctctccaggaatttaagccgacctccatagccataccatatg 979
||||||||||| |||||||| || || |||| || | || |||||||||||||| ||
Sbjct: 534 gtgttgatataggcaaatctttcaagccatttcagacctcccccatagccataccagatt 475
Query: 980 ggacaatgcctgctgaaaagaatttcaatggaaccaagagcccaccgaagcacttgattc 1039
|| ||||| ||||| | | |||||| | || || | |||||| || | ||| || |||
Sbjct: 474 gggcaatgtctgctcatgaaaatttctactgatcccaaagcccaacgcaacacctggttc 415
Query: 1040 aaacgatccgaaaggttgataggagcagatcccttgaaagctggtcgcttaggcatgcag 1099
||||| || || || ||||| |||||||| || ||||| |||| ||| || ||||| |||
Sbjct: 414 aaacggtctgatagattgattggagcagaccctttgaatgctgctcgtttgggcatacag 355
Query: 1100 tagattgatcgccagcctcgagcatgcatcttgaatccggtgagaatgtcttctgtaaca 1159
|| || || ||||||||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 354 taaatggaccgccagcctcgagtgtgcatcttgaatccagtcagaatgtcctctgtgact 295
Query: 1160 gaaccatagatccacccaa 1178
|| ||||||||||| ||||
Sbjct: 294 gatccatagatccatccaa 276
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 429,046
Number of Sequences: 355925
Number of extensions: 429046
Number of successful extensions: 116873
Number of sequences better than 0.5: 275
Number of HSP's better than 0.5 without gapping: 272
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 115813
Number of HSP's gapped (non-prelim): 912
length of query: 3727
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3707
effective length of database: 210,158,737
effective search space: 779058438059
effective search space used: 779058438059
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)