BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437714.2.1
(1649 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR022070.1|DR022070 STRS1_48_E03.g1_A034 Shoot tip pitch... 78 1e-012
gb|DR695059.1|DR695059 EST1085152 Normalized pine embryo li... 76 5e-012
gb|DT638971.1|DT638971 EST1153902 Normalized pine embryo li... 76 5e-012
gb|BX251489.1|BX251489 BX251489 Pinus pinaster differenciat... 64 2e-008
gb|CO199471.1|CO199471 GEO2_1_A02.g1_A032 Root gravitropism... 62 8e-008
gb|DR015465.1|DR015465 STRS1_3_E03.g1_A034 Shoot tip pitch ... 62 8e-008
gb|DR015775.1|DR015775 STRS1_5_C04.g1_A034 Shoot tip pitch ... 62 8e-008
gb|DR694632.1|DR694632 EST1084724 Normalized pine embryo li... 62 8e-008
gb|DT638526.1|DT638526 EST1153457 Normalized pine embryo li... 62 8e-008
gb|BM427972.1|BM427972 NXRV_006_H09_F NXRV (Nsf Xylem Root ... 58 1e-006
gb|DR178856.1|DR178856 RTMNUT1_14_A01.g1_A029 Roots minus m... 58 1e-006
gb|BG040559.1|BG040559 NXSI_112_E09_F NXSI (Nsf Xylem Side ... 50 3e-004
gb|CX652563.1|CX652563 COLD1_60_A02.b1_A029 Root cold Pinus... 50 3e-004
gb|DR052941.1|DR052941 RTCA1_7_G11.g1_A029 Roots minus calc... 50 3e-004
gb|DR072274.1|DR072274 RTDK1_25_E02.b1_A029 Roots, dark Pin... 50 3e-004
gb|BX679804.1|BX679804 BX679804 RS Pinus pinaster cDNA clon... 48 0.001
gb|CO161897.1|CO161897 FLD1_31_H03.g1_A029 Root flooded Pin... 48 0.001
gb|DR017144.1|DR017144 STRS1_14_G08.b1_A034 Shoot tip pitch... 48 0.001
gb|CF392364.1|CF392364 RTDR3_7_A01.g1_A022 Loblolly pine ro... 46 0.005
gb|BX682876.1|BX682876 BX682876 Pinus pinaster differenciat... 46 0.005
gb|DR685686.1|DR685686 EST1075763 Normalized pine embryo li... 46 0.005
gb|DT632995.1|DT632995 EST1147926 Normalized pine embryo li... 46 0.005
gb|CF386717.1|CF386717 RTDR1_16_E08.g1_A015 Loblolly pine r... 44 0.018
gb|CF399120.1|CF399120 RTDS3_9_B06.g1_A022 Drought-stressed... 44 0.018
gb|DR117450.1|DR117450 RTMG1_7_C01.b1_A029 Roots minus magn... 44 0.018
gb|CF396977.1|CF396977 RTDS2_25_A05.g1_A021 Drought-stresse... 42 0.072
gb|CO198098.1|CO198098 GEO1_11_F05.b1_A029 Root gravitropis... 42 0.072
gb|CO198172.1|CO198172 GEO1_11_F05.g1_A029 Root gravitropis... 42 0.072
gb|DR015662.1|DR015662 STRS1_4_H01.g1_A034 Shoot tip pitch ... 42 0.072
gb|AF441499.1| Pinus taeda clone 17d3r microsatellite PtTX2... 42 0.072
gb|BM428438.1|BM428438 NXRV_016_F03_F NXRV (Nsf Xylem Root ... 40 0.28
gb|BQ290610.1|BQ290610 NXRV047_D12_F NXRV (Nsf Xylem Root w... 40 0.28
gb|BQ633947.1|BQ633947 NXRV062_G09_F NXRV (Nsf Xylem Root w... 40 0.28
gb|BQ635229.1|BQ635229 NXRV079_F11_F NXRV (Nsf Xylem Root w... 40 0.28
gb|CF479193.1|CF479193 RTWW3_24_F03.g1_A022 Well-watered lo... 40 0.28
gb|DR018741.1|DR018741 STRS1_25_H12.b1_A034 Shoot tip pitch... 40 0.28
>gb|DR022070.1|DR022070 STRS1_48_E03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_48_E03_A034 5', mRNA sequence
Length = 368
Score = 77.8 bits (39), Expect = 1e-012
Identities = 135/167 (80%)
Strand = Plus / Minus
Query: 868 gtcaagtgaccggtcatcacatattcaggggcagcataaccgtaggttcccatcacccgt 927
|||||||| || ||||||||||| |||||||| ||||| || || || |||| ||| ||
Sbjct: 328 gtcaagtggccagtcatcacatactcaggggctgcatagccatatgtacccagcacacga 269
Query: 928 gtcgacacatgcgtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagt 987
||||| ||||| ||||| || || || || ||||||||||| || ||||| ||||| |||
Sbjct: 268 gtcgaaacatgagtctggtccccctctggtccatcttttgcaagtccaaaatcagaaagt 209
Query: 988 ttggcagtataatcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| ||||| ||||| || || | | || |||||||||||||||||
Sbjct: 208 tttgcagtgtaatccgaatctaataaaacatttgatgtcttgaaatc 162
>gb|DR695059.1|DR695059 EST1085152 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ95 3' end, mRNA sequence
Length = 794
Score = 75.8 bits (38), Expect = 5e-012
Identities = 236/302 (78%)
Strand = Plus / Minus
Query: 1159 agacttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatat 1218
||||| || |||||||||||||| || || |||| | ||||||||| ||||| || ||
Sbjct: 703 agactgccccgaaacatgaactcataaaccagcaatctatggtcatcctcgcaacagtaa 644
Query: 1219 ccgatcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagc 1278
|| |||| || ||||||| ||||| |||| ||| ||||| | |||| || || |||
Sbjct: 643 cctatcagtttaaccaaatggggatgactcagctgtcccagaaaaataacttccgtcagc 584
Query: 1279 cattctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgac 1338
||||| ||||| |||||| |||| ||||||||| ||||| |||||||||||||| |
Sbjct: 583 cattccctgtggccttgaaaaccatatttgttgagaaccttcactgcaacaggcagaggt 524
Query: 1339 ttcagcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctcct 1398
|| || || | |||||||| ||||||| |||||| || || || || ||||| ||||||
Sbjct: 523 ttgaggcctgctctgacattctcatctacgtaacctttatatacagttccaaagcctcct 464
Query: 1399 tcgccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtg 1458
|| || | || |||||| |||||| || || ||||| |||| || ||||||||||||
Sbjct: 463 tcccccaaaatataatcggaacggaaacttttggtgatgatctccagttcaaacaatgtg 404
Query: 1459 aa 1460
||
Sbjct: 403 aa 402
>gb|DT638971.1|DT638971 EST1153902 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL57 3' end, mRNA sequence
Length = 837
Score = 75.8 bits (38), Expect = 5e-012
Identities = 236/302 (78%)
Strand = Plus / Minus
Query: 1159 agacttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttcgcagcaatat 1218
||||| || |||||||||||||| || || |||| | ||||||||| ||||| || ||
Sbjct: 711 agactgccccgaaacatgaactcataaaccagcaatctatggtcatcctcgcaacagtaa 652
Query: 1219 ccgatcaacttcaccaaatttggatgcctcaactgccccaggcagttaacctcggtaagc 1278
|| |||| || ||||||| ||||| |||| ||| ||||| | |||| || || |||
Sbjct: 651 cctatcagtttaaccaaatggggatgactcagctgtcccagaaaaataacttccgtcagc 592
Query: 1279 cattctctgtgcccttgatgtccatctttgttgagcaccttgactgcaacaggcagtgac 1338
||||| ||||| |||||| |||| ||||||||| ||||| |||||||||||||| |
Sbjct: 591 cattccctgtggccttgaaaaccatatttgttgagaaccttcactgcaacaggcagaggt 532
Query: 1339 ttcagcccaaccctgacattttcatctatgtaacccttgtaaacggtcccaaatcctcct 1398
|| || || | |||||||| ||||||| |||||| || || || || ||||| ||||||
Sbjct: 531 ttgaggcctgctctgacattctcatctacgtaacctttatatacagttccaaagcctcct 472
Query: 1399 tcgccaagaacataatcaacacggaagctctttgtgattgtctctagctcaaacaatgtg 1458
|| || | || |||||| |||||| || || ||||| |||| || ||||||||||||
Sbjct: 471 tcccccaaaatataatcggaacggaaacttttggtgatgatctccagttcaaacaatgtg 412
Query: 1459 aa 1460
||
Sbjct: 411 aa 410
>gb|BX251489.1|BX251489 BX251489 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP050C03, mRNA sequence
Length = 703
Score = 63.9 bits (32), Expect = 2e-008
Identities = 113/140 (80%)
Strand = Plus / Minus
Query: 844 aagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggcagca 903
|||||||| || ||||| | ||| ||||| || || ||||| ||||||||||| || |||
Sbjct: 148 aagctgtagacatcacttctagccgtcaaatgccccgtcataacatattcaggagctgca 89
Query: 904 taaccgtaggttcccatcacccgtgtcgacacatgcgtctgatcaccttcagggccatct 963
||||| || || ||||| ||||| ||||| ||||| || | ||| || | ||| ||||||
Sbjct: 88 taaccatatgtccccatgacccgggtcgaaacatgagtttcatctccctgaggtccatct 29
Query: 964 tttgcgaggccaaagtcaga 983
||||| || ||||| |||||
Sbjct: 28 tttgcaagtccaaaatcaga 9
>gb|CO199471.1|CO199471 GEO2_1_A02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_A02_A032 5', mRNA sequence
Length = 825
Score = 61.9 bits (31), Expect = 8e-008
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||| ||||| || ||||| || || |||||||| || || || || |||||
Sbjct: 388 gtcattacatactcaggagctgcatagccataagttcccatgactcgagtagaaacatgg 329
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|| | || |||||||| ||||||||||| || ||||||||||| ||||||||| | ||
Sbjct: 328 gttttgtctccttcaggtccatcttttgctagaccaaagtcagaaagtttggcattgtat 269
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| || |||| ||| ||||| || ||||| |||||
Sbjct: 268 tccgaatccaacaggatgttggacgtcttaaaatc 234
>gb|DR015465.1|DR015465 STRS1_3_E03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_E03_A034 5', mRNA sequence
Length = 853
Score = 61.9 bits (31), Expect = 8e-008
Identities = 124/155 (80%)
Strand = Plus / Plus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||| ||||| || ||||| || || |||||||| || || || || |||||
Sbjct: 688 gtcattacatactcaggagctgcatagccataagttcccatgactcgagtagaaacatgg 747
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|| | || |||||||| ||||||||||| || ||||||||||| ||||||||| | ||
Sbjct: 748 gttttgtctccttcaggtccatcttttgctagaccaaagtcagaaagtttggcattgtat 807
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| || |||| ||| ||||| || ||||| |||||
Sbjct: 808 tccgaatccaacaggatgttggacgtcttaaaatc 842
>gb|DR015775.1|DR015775 STRS1_5_C04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C04_A034 5', mRNA sequence
Length = 780
Score = 61.9 bits (31), Expect = 8e-008
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||| ||||| || ||||| || || |||||||| || || || || |||||
Sbjct: 348 gtcattacatactcaggagctgcatagccataagttcccatgactcgagtagaaacatgg 289
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|| | || |||||||| ||||||||||| || ||||||||||| ||||||||| | ||
Sbjct: 288 gttttgtctccttcaggtccatcttttgctagaccaaagtcagaaagtttggcattgtat 229
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| || |||| ||| ||||| || ||||| |||||
Sbjct: 228 tccgaatccaacaggatgttggacgtcttaaaatc 194
>gb|DR694632.1|DR694632 EST1084724 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEE90 3' end, mRNA sequence
Length = 790
Score = 61.9 bits (31), Expect = 8e-008
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||| ||||| || ||||| || || |||||||| || || || || |||||
Sbjct: 464 gtcattacatactcaggagctgcatagccataagttcccatgactcgagtagaaacatgg 405
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|| | || |||||||| ||||||||||| || ||||||||||| ||||||||| | ||
Sbjct: 404 gttttgtctccttcaggtccatcttttgctagaccaaagtcagaaagtttggcattgtat 345
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| || |||| ||| ||||| || ||||| |||||
Sbjct: 344 tccgaatccaacaggatgttggacgtcttaaaatc 310
>gb|DT638526.1|DT638526 EST1153457 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHG24 3' end, mRNA sequence
Length = 786
Score = 61.9 bits (31), Expect = 8e-008
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||| ||||| || ||||| || || |||||||| || || || || |||||
Sbjct: 472 gtcattacatactcaggagctgcatagccataagttcccatgactcgagtagaaacatgg 413
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataa 999
|| | || |||||||| ||||||||||| || ||||||||||| ||||||||| | ||
Sbjct: 412 gttttgtctccttcaggtccatcttttgctagaccaaagtcagaaagtttggcattgtat 353
Query: 1000 tcggagtccagcagaatgtttgatgtcttgaaatc 1034
|| || |||| ||| ||||| || ||||| |||||
Sbjct: 352 tccgaatccaacaggatgttggacgtcttaaaatc 318
>gb|BM427972.1|BM427972 NXRV_006_H09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_006_H09 5' similar to Arabidopsis thaliana
sequence At3g01300 putative protein kinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 322
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 949 ccttcagggccatcttttgcgaggccaaagtcagacagtttggca 993
|||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 55 ccttcaggtccatcttttgctagaccaaagtcagaaagtttggca 11
>gb|DR178856.1|DR178856 RTMNUT1_14_A01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_A01_A029 5', mRNA sequence
Length = 828
Score = 58.0 bits (29), Expect = 1e-006
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 886 acatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctga 945
||||||||||| |||||||| || || || ||||| |||| ||| || ||||| || | |
Sbjct: 280 acatattcaggagcagcatagccataagtacccatgacccttgtagagacatgtgtgtta 221
Query: 946 tcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataatcggag 1005
||||| |||||||| ||||| || ||||||||||| || || ||| || ||| ||
Sbjct: 220 tcacccgttgggccatcctttgctagtccaaagtcagagagctttgcattaaaattcgaa 161
Query: 1006 tccagcagaatgtttgatgtcttgaaatc 1034
|| || ||||||||||||| |||||||||
Sbjct: 160 tctagaagaatgtttgatgccttgaaatc 132
>gb|BG040559.1|BG040559 NXSI_112_E09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_112_E09 5' similar to Arabidopsis thaliana
sequence At2g28930 protein kinase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 514
Score = 50.1 bits (25), Expect = 3e-004
Identities = 118/149 (79%)
Strand = Plus / Minus
Query: 886 acatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctga 945
||||||||||| |||||||| || || || ||||| |||| ||| || ||||| || | |
Sbjct: 379 acatattcaggagcagcatagccataagtacccatgacccttgtagagacatgtgtgtta 320
Query: 946 tcaccttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataatcggag 1005
||||| |||||||| ||||| || ||||||||||| || || ||| || ||| ||
Sbjct: 319 tcacccgttgggccatcctttgctagtccaaagtcagagagctttgcattaaaattcgaa 260
Query: 1006 tccagcagaatgtttgatgtcttgaaatc 1034
|| || |||||||| |||| |||||||||
Sbjct: 259 tctagaagaatgttcgatgccttgaaatc 231
>gb|CX652563.1|CX652563 COLD1_60_A02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_60_A02_A029 3', mRNA sequence
Length = 578
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1370 aacccttgtaaacggtcccaaatcctccttcgccaag 1406
||||||||||||| | ||||||||| |||||||||||
Sbjct: 391 aacccttgtaaaccgacccaaatccaccttcgccaag 427
>gb|DR052941.1|DR052941 RTCA1_7_G11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_7_G11_A029 5', mRNA sequence
Length = 872
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtcactc 861
|||||| || |||||||| ||||||||||||||||||
Sbjct: 468 ctccagaagaaccacgccaaagctgtacacgtcactc 432
>gb|DR072274.1|DR072274 RTDK1_25_E02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_E02_A029 3', mRNA sequence
Length = 706
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 825 ctccagcaggaccacgccgaagctgtacacgtcactc 861
|||||| || |||||||| ||||||||||||||||||
Sbjct: 488 ctccagaagaaccacgccaaagctgtacacgtcactc 524
>gb|BX679804.1|BX679804 BX679804 RS Pinus pinaster cDNA clone RS34B09, mRNA sequence
Length = 544
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 838 acgccgaagctgtacacgtcactc 861
||||||||||||||||||||||||
Sbjct: 124 acgccgaagctgtacacgtcactc 101
>gb|CO161897.1|CO161897 FLD1_31_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_31_H03_A029 5', mRNA sequence
Length = 857
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| ||||| ||||| || ||||| || || |||||||| || || || || |||||
Sbjct: 108 gtcattacatactcaggagctgcatagccataagttcccatgactcgagtagaaacatgg 49
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtcaga 983
|| | || |||||||| ||||||||||| || |||||||||||
Sbjct: 48 gttttgtctccttcaggtccatcttttgctagaccaaagtcaga 5
>gb|DR017144.1|DR017144 STRS1_14_G08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_G08_A034 3', mRNA sequence
Length = 781
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 838 acgccgaagctgtacacgtcactc 861
||||||||||||||||||||||||
Sbjct: 230 acgccgaagctgtacacgtcactc 207
>gb|CF392364.1|CF392364 RTDR3_7_A01.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_A01_A022 5', mRNA sequence
Length = 168
Score = 46.1 bits (23), Expect = 0.005
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1387 ccaaatcctccttcgccaagaacataatcaacacggaagctctttgt 1433
|||||||||||||| ||||| |||| |||| | |||||| |||||||
Sbjct: 150 ccaaatcctccttctccaaggacatgatcagcccggaagttctttgt 104
>gb|BX682876.1|BX682876 BX682876 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 123A04 similar to Receptor protein kinase
CLAVATA1 precursor (EC 2.7.1.-), mRNA sequence
Length = 709
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 835 accacgccgaagctgtacacgtcactc 861
|||||||| ||||||||||||||||||
Sbjct: 34 accacgccaaagctgtacacgtcactc 8
>gb|DR685686.1|DR685686 EST1075763 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB671 3' end, mRNA sequence
Length = 819
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 1351 ctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcgccaagaaca 1410
|||||| | ||||||||||| || || || || | |||||||||||||| ||||| |||
Sbjct: 587 ctgacactctcatctatgtagcctttatagacaatgccaaatcctccttctccaaggaca 528
Query: 1411 taatcaacacggaagctctttgt 1433
| |||| | |||||| |||||||
Sbjct: 527 tgatcagcccggaagttctttgt 505
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1276 agccattctctgtgcccttgatgtccatc 1304
||||||||| ||||||||||| |||||||
Sbjct: 662 agccattctttgtgcccttgaagtccatc 634
>gb|DT632995.1|DT632995 EST1147926 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFQ05 3' end, mRNA sequence
Length = 826
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 1351 ctgacattttcatctatgtaacccttgtaaacggtcccaaatcctccttcgccaagaaca 1410
|||||| | ||||||||||| || || || || | |||||||||||||| ||||| |||
Sbjct: 595 ctgacactctcatctatgtagcctttatagacaatgccaaatcctccttctccaaggaca 536
Query: 1411 taatcaacacggaagctctttgt 1433
| |||| | |||||| |||||||
Sbjct: 535 tgatcagcccggaagttctttgt 513
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1276 agccattctctgtgcccttgatgtccatc 1304
||||||||| ||||||||||| |||||||
Sbjct: 670 agccattctttgtgcccttgaagtccatc 642
>gb|CF386717.1|CF386717 RTDR1_16_E08.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_16_E08_A015 5', mRNA
sequence
Length = 830
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 825 ctccagcaggaccacgccgaagctgtacac 854
||||||||| ||||||||||| ||||||||
Sbjct: 249 ctccagcagaaccacgccgaaactgtacac 220
>gb|CF399120.1|CF399120 RTDS3_9_B06.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_9_B06_A022 5', mRNA sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 868 gtcaagtgaccggtcatcacatattcaggggcagcata 905
|||||||| || ||||||||||| |||||||| |||||
Sbjct: 67 gtcaagtggccagtcatcacatactcaggggctgcata 30
>gb|DR117450.1|DR117450 RTMG1_7_C01.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_C01_A029 3', mRNA sequence
Length = 840
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 825 ctccagcaggaccacgccgaagctgtacac 854
||||||||| ||||||||||| ||||||||
Sbjct: 126 ctccagcagaaccacgccgaaactgtacac 97
>gb|CF396977.1|CF396977 RTDS2_25_A05.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_25_A05_A021 5', mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 823 agctccagcaggaccacgccgaagctgta 851
||||||||||||||||| || ||||||||
Sbjct: 492 agctccagcaggaccacaccaaagctgta 464
>gb|CO198098.1|CO198098 GEO1_11_F05.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_11_F05_A029 3', mRNA sequence
Length = 779
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 158 gactgactgactgactgattgattc 182
|||||||||| ||||||||||||||
Sbjct: 92 gactgactgattgactgattgattc 68
>gb|CO198172.1|CO198172 GEO1_11_F05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_11_F05_A029 5', mRNA sequence
Length = 774
Score = 42.1 bits (21), Expect = 0.072
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 158 gactgactgactgactgattgattc 182
|||||||||| ||||||||||||||
Sbjct: 89 gactgactgattgactgattgattc 65
>gb|DR015662.1|DR015662 STRS1_4_H01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_H01_A034 5', mRNA sequence
Length = 822
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 823 agctccagcaggaccacgccgaagctgta 851
||||||||||||||||| || ||||||||
Sbjct: 213 agctccagcaggaccacaccaaagctgta 185
>gb|AF441499.1| Pinus taeda clone 17d3r microsatellite PtTX2162 sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.072
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 155 acagactgactgactgactga 175
|||||||||||||||||||||
Sbjct: 370 acagactgactgactgactga 350
>gb|BM428438.1|BM428438 NXRV_016_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda
cDNA clone NXRV_016_F03 5', mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 aagcaaagcaaagcaaagca 39
||||||||||||||||||||
Sbjct: 18 aagcaaagcaaagcaaagca 37
>gb|BQ290610.1|BQ290610 NXRV047_D12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV047_D12 5' similar to Arabidopsis thaliana
sequence At5g15080 serine/threonine specific protein
kinase -like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.28
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 973 ccaaagtcagacagtttggcagtataatcggagtccagcagaatgtttgatgtcttgaaa 1032
||||||||||| || || ||| ||||||| || |||| ||||| || || |||||||||
Sbjct: 520 ccaaagtcagaaagctttgcattataatctgaatccaagagaatattagacgtcttgaaa 461
Query: 1033 tctc 1036
||||
Sbjct: 460 tctc 457
>gb|BQ633947.1|BQ633947 NXRV062_G09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda
cDNA clone NXRV062_G09 5', mRNA sequence
Length = 790
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 aagcaaagcaaagcaaagca 39
||||||||||||||||||||
Sbjct: 18 aagcaaagcaaagcaaagca 37
>gb|BQ635229.1|BQ635229 NXRV079_F11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda
cDNA clone NXRV079_F11 5', mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 aagcaaagcaaagcaaagca 39
||||||||||||||||||||
Sbjct: 18 aagcaaagcaaagcaaagca 37
>gb|CF479193.1|CF479193 RTWW3_24_F03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_24_F03_A022 5', mRNA sequence
Length = 755
Score = 40.1 bits (20), Expect = 0.28
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 886 acatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctga 945
||||| ||||| ||||||||||| | |||||||| | || ||| || ||||| || | |
Sbjct: 269 acatactcaggagcagcataaccatgagttcccatgatccttgtagagacatgtgtttta 210
Query: 946 tcaccttcagggccatcttttgcgaggccaaagtcagacagtttggca 993
||||| || ||||| || || |||||||||||||| |||||||||
Sbjct: 209 tcaccagttggtccatccttggcaaggccaaagtcagaaagtttggca 162
>gb|DR018741.1|DR018741 STRS1_25_H12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_H12_A034 3', mRNA sequence
Length = 868
Score = 40.1 bits (20), Expect = 0.28
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 886 acatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctga 945
||||| ||||| ||||||||||| | |||||||| | || ||| || ||||| || | |
Sbjct: 110 acatactcaggagcagcataaccatgagttcccatgatccttgtagagacatgtgtttta 51
Query: 946 tcaccttcagggccatcttttgcgaggccaaagtcagacagtttggca 993
||||| || ||||| || || |||||||||||||| |||||||||
Sbjct: 50 tcaccagttggtccatccttggcaaggccaaagtcagaaagtttggca 3
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,020
Number of Sequences: 355925
Number of extensions: 196020
Number of successful extensions: 57818
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57733
Number of HSP's gapped (non-prelim): 76
length of query: 1649
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1629
effective length of database: 210,158,737
effective search space: 342348582573
effective search space used: 342348582573
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)