BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430946.2.3
(3896 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 311 1e-082
gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus pota... 240 4e-061
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 238 1e-060
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 230 3e-058
gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 ... 218 1e-054
gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late w... 216 5e-054
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 216 5e-054
gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch... 172 7e-041
gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo li... 172 7e-041
gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciat... 168 1e-039
gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clon... 165 2e-038
gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side ... 135 2e-029
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 129 9e-028
gb|DN609460.1|DN609460 EST962510 Subtracted pine embryo lib... 121 2e-025
gb|DT627755.1|DT627755 EST1156504 Subtracted pine embryo li... 121 2e-025
gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Plani... 115 1e-023
gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Plani... 115 1e-023
dbj|BD236020.1| Materials and method for modification of pl... 115 1e-023
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 115 1e-023
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 115 1e-023
gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus ... 107 3e-021
gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciat... 100 8e-019
gb|AW985306.1|AW985306 NXNV_135_F04_F Nsf Xylem Normal wood... 100 8e-019
gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus adde... 100 8e-019
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 100 8e-019
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 100 8e-019
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 100 8e-019
gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood... 98 3e-018
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 98 3e-018
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 98 3e-018
gb|BF777175.1|BF777175 NXSI_066_C05_F NXSI (Nsf Xylem Side ... 92 2e-016
gb|BF778225.1|BF778225 NXSI_083_H07_F NXSI (Nsf Xylem Side ... 92 2e-016
gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stresse... 92 2e-016
gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus pota... 92 2e-016
gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus ad... 92 2e-016
dbj|BD235986.1| Materials and method for modification of pl... 92 2e-016
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 90 8e-016
gb|BF609349.1|BF609349 NXSI_045_C06_F NXSI (Nsf Xylem Side ... 86 1e-014
gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus mag... 84 5e-014
gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip libra... 82 2e-013
gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDN... 78 3e-012
gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood... 78 3e-012
gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compr... 78 3e-012
gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compr... 78 3e-012
gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control P... 78 3e-012
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 78 3e-012
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 78 3e-012
gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulf... 78 3e-012
dbj|BD235989.1| Materials and method for modification of pl... 78 3e-012
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 78 3e-012
gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA... 76 1e-011
gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood... 76 1e-011
gb|CD022890.1|CD022890 NXPV_089_B01_F NXPV (Nsf Xylem Plani... 76 1e-011
gb|CD024597.1|CD024597 NXRV056_C03_F NXRV (Nsf Xylem Root w... 76 1e-011
gb|DR162195.1|DR162195 RTFE1_16_G12.b1_A029 Roots minus iro... 76 1e-011
dbj|BD236021.1| Materials and method for modification of pl... 76 1e-011
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 76 1e-011
gb|AW056552.1|AW056552 ST51E06 Pine TriplEx shoot tip libra... 74 5e-011
gb|BF186257.1|BF186257 NXCI_135_B10_F NXCI (Nsf Xylem Compr... 74 5e-011
gb|AW290811.1|AW290811 NXNV047B05F Nsf Xylem Normal wood Ve... 72 2e-010
gb|BM428045.1|BM428045 NXRV_008_A09_F NXRV (Nsf Xylem Root ... 72 2e-010
gb|CD027470.1|CD027470 NXNV047B05 Nsf Xylem Normal wood Ver... 72 2e-010
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 72 2e-010
gb|AW010875.1|AW010875 ST12E01 Pine TriplEx shoot tip libra... 68 3e-009
gb|BX255611.1|BX255611 BX255611 Pinus pinaster differenciat... 68 3e-009
gb|CO369885.1|CO369885 RTK1_55_A04.b1_A029 Roots minus pota... 68 3e-009
gb|DR089385.1|DR089385 RTAL1_8_G12.b1_A029 Roots plus added... 68 3e-009
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 68 3e-009
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 68 3e-009
gb|DR746030.1|DR746030 RTCU1_34_F01.b1_A029 Roots plus adde... 68 3e-009
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 68 3e-009
gb|BV102457.1| AY531556.SNP2 Pinus pinaster megagametophyte... 68 3e-009
gb|AY531556.1| Pinus pinaster putative cellulose synthase g... 68 3e-009
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 66 1e-008
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 66 1e-008
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 66 1e-008
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 66 1e-008
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 66 1e-008
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 66 1e-008
gb|BM493879.1|BM493879 NXLV_071_A06_F NXLV (Nsf Xylem Late ... 66 1e-008
gb|CD021726.1|CD021726 NXNV_159_F12_F Nsf Xylem Normal wood... 66 1e-008
gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered lo... 66 1e-008
gb|CX647876.1|CX647876 COLD1_25_C03.b1_A029 Root cold Pinus... 66 1e-008
gb|BX251307.1|BX251307 BX251307 Pinus pinaster differenciat... 64 5e-008
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 64 5e-008
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 64 5e-008
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 64 5e-008
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 64 5e-008
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 64 5e-008
gb|BQ695964.1|BQ695964 NXPV_034_H04_F NXPV (Nsf Xylem Plani... 64 5e-008
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 64 5e-008
gb|BQ698119.1|BQ698119 NXPV_064_G05_F NXPV (Nsf Xylem Plani... 64 5e-008
gb|BQ698366.1|BQ698366 NXPV_069_A10_F NXPV (Nsf Xylem Plani... 64 5e-008
gb|BQ701215.1|BQ701215 NXSI_023_H05_F NXSI (Nsf Xylem Side ... 64 5e-008
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 64 5e-008
gb|CD023046.1|CD023046 NXPV_098_A07_F NXPV (Nsf Xylem Plani... 64 5e-008
gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered lob... 64 5e-008
gb|CF668221.1|CF668221 RTCNT1_35_D11.b1_A029 Root control P... 64 5e-008
gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control P... 64 5e-008
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 64 5e-008
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 64 5e-008
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 64 5e-008
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 64 5e-008
gb|DR744391.1|DR744391 RTCU1_22_E01.b1_A029 Roots plus adde... 64 5e-008
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 64 5e-008
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 64 5e-008
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 64 5e-008
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 64 5e-008
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 64 5e-008
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 64 5e-008
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 64 5e-008
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 64 5e-008
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 64 5e-008
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 64 5e-008
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 64 5e-008
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 64 5e-008
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 64 5e-008
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 64 5e-008
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 64 5e-008
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 64 5e-008
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 64 5e-008
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 64 5e-008
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 64 5e-008
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 64 5e-008
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 64 5e-008
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 64 5e-008
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 64 5e-008
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 64 5e-008
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 64 5e-008
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 64 5e-008
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 64 5e-008
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 64 5e-008
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 64 5e-008
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 64 5e-008
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 64 5e-008
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 64 5e-008
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 64 5e-008
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 64 5e-008
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 64 5e-008
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 64 5e-008
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 64 5e-008
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 64 5e-008
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 64 5e-008
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 64 5e-008
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 64 5e-008
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 64 5e-008
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 64 5e-008
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 64 5e-008
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 64 5e-008
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 64 5e-008
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 64 5e-008
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 64 5e-008
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 64 5e-008
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 64 5e-008
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 64 5e-008
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 64 5e-008
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 64 5e-008
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 64 5e-008
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 64 5e-008
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 64 5e-008
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 64 5e-008
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 64 5e-008
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 64 5e-008
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 64 5e-008
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 64 5e-008
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 64 5e-008
gb|BE431393.1|BE431393 NXNV_181_F12_F Nsf Xylem Normal wood... 62 2e-007
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 62 2e-007
gb|BG275715.1|BG275715 NXSI_145_B01_F NXSI (Nsf Xylem Side ... 62 2e-007
gb|BG275945.1|BG275945 NXSI_149_G12_F NXSI (Nsf Xylem Side ... 62 2e-007
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 62 2e-007
gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine r... 62 2e-007
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 62 2e-007
gb|AA556640.1|AA556640 495 Loblolly pine C Pinus taeda cDNA... 60 7e-007
gb|CD016846.1|CD016846 NXCI_064_H04_F NXCI (Nsf Xylem Compr... 60 7e-007
gb|CD020879.1|CD020879 NXNV_092_D05_F Nsf Xylem Normal wood... 60 7e-007
gb|DR169086.1|DR169086 RTPHOS1_30_A02.b1_A029 Roots minus p... 60 7e-007
gb|BG832808.1|BG832808 NXPV_080_C10_F NXPV (Nsf Xylem Plani... 58 3e-006
gb|BQ291066.1|BQ291066 NXRV055_C03_F NXRV (Nsf Xylem Root w... 58 3e-006
gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root w... 58 3e-006
gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root w... 58 3e-006
gb|CF666027.1|CF666027 RTCNT1_20_E07.b1_A029 Root control P... 58 3e-006
gb|CF672816.1|CF672816 RTCNT1_74_D05.b1_A029 Root control P... 58 3e-006
gb|BX682482.1|BX682482 BX682482 Pinus pinaster differenciat... 58 3e-006
gb|BX682490.1|BX682490 BX682490 Pinus pinaster differenciat... 58 3e-006
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 58 3e-006
gb|DR101934.1|DR101934 STRR1_76_G04.g1_A033 Stem Response R... 58 3e-006
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 58 3e-006
gb|BV079715.1| Pp_CesA3 Pinus pinaster megagametophytes Pin... 58 3e-006
gb|BE451860.1|BE451860 NXCI_004_B09_F NXCI (Nsf Xylem Compr... 56 1e-005
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 56 1e-005
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 56 1e-005
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 54 4e-005
gb|AW698302.1|AW698302 NXNV_071_E11_F Nsf Xylem Normal wood... 54 4e-005
gb|AW784057.1|AW784057 NXNV_117_B10_F Nsf Xylem Normal wood... 54 4e-005
gb|BE123803.1|BE123803 NXNV_156_F02_F Nsf Xylem Normal wood... 54 4e-005
gb|BF169757.1|BF169757 NXCI_128_G07_F NXCI (Nsf Xylem Compr... 54 4e-005
gb|BF777661.1|BF777661 NXSI_073_C10_F NXSI (Nsf Xylem Side ... 54 4e-005
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 54 4e-005
gb|AY764673.1|AY764673S1 Pinus taeda isolate 11 cellulose s... 54 4e-005
gb|AY764675.1|AY764675S1 Pinus taeda isolate 16 cellulose s... 54 4e-005
gb|AY764677.1|AY764677S1 Pinus taeda isolate 25 cellulose s... 54 4e-005
gb|AY764679.1|AY764679S1 Pinus taeda isolate 7 cellulose sy... 54 4e-005
gb|AY764681.1|AY764681S1 Pinus taeda isolate 6 cellulose sy... 54 4e-005
gb|AY764683.1|AY764683S1 Pinus taeda isolate 4 cellulose sy... 54 4e-005
gb|AY764685.1|AY764685S1 Pinus taeda isolate 26 cellulose s... 54 4e-005
gb|AY764687.1|AY764687S1 Pinus taeda isolate 9 cellulose sy... 54 4e-005
gb|AY764689.1|AY764689S1 Pinus taeda isolate 23 cellulose s... 54 4e-005
gb|AY764691.1|AY764691S1 Pinus taeda isolate 13 cellulose s... 54 4e-005
gb|AY764693.1|AY764693S1 Pinus taeda isolate 30 cellulose s... 54 4e-005
gb|AY764695.1|AY764695S1 Pinus taeda isolate 22 cellulose s... 54 4e-005
gb|AY764697.1|AY764697S1 Pinus taeda isolate 32 cellulose s... 54 4e-005
gb|AY764699.1|AY764699S1 Pinus taeda isolate 18 cellulose s... 54 4e-005
gb|AY764701.1|AY764701S1 Pinus taeda isolate 10 cellulose s... 54 4e-005
gb|AY764703.1|AY764703S1 Pinus taeda isolate 14 cellulose s... 54 4e-005
gb|AY764705.1|AY764705S1 Pinus taeda isolate 21 cellulose s... 54 4e-005
gb|AY764707.1|AY764707S1 Pinus taeda isolate 31 cellulose s... 54 4e-005
gb|AY764709.1|AY764709S1 Pinus taeda isolate 5 cellulose sy... 54 4e-005
gb|AY764711.1|AY764711S1 Pinus taeda isolate 2 cellulose sy... 54 4e-005
gb|AY764713.1|AY764713S1 Pinus taeda isolate 3 cellulose sy... 54 4e-005
gb|AY764715.1|AY764715S1 Pinus taeda isolate 19 cellulose s... 54 4e-005
gb|AY764717.1|AY764717S1 Pinus taeda isolate 28 cellulose s... 54 4e-005
gb|AY764719.1|AY764719S1 Pinus taeda isolate 17 cellulose s... 54 4e-005
gb|AY764721.1|AY764721S1 Pinus taeda isolate 8 cellulose sy... 54 4e-005
gb|AY764723.1|AY764723S1 Pinus taeda isolate 15 cellulose s... 54 4e-005
gb|AY764725.1|AY764725S1 Pinus taeda isolate 1 cellulose sy... 54 4e-005
gb|AY764727.1|AY764727S1 Pinus taeda isolate 29 cellulose s... 54 4e-005
gb|AY764729.1|AY764729S1 Pinus taeda isolate 20 cellulose s... 54 4e-005
gb|AY764731.1|AY764731S1 Pinus taeda isolate 27 cellulose s... 54 4e-005
gb|AY764733.1|AY764733S1 Pinus taeda isolate 12 cellulose s... 54 4e-005
gb|AY764735.1|AY764735S1 Pinus taeda isolate 24 cellulose s... 54 4e-005
gb|BV079717.1| Pp_CesA7 Pinus pinaster megagametophytes Pin... 54 4e-005
gb|BE643725.1|BE643725 NXCI_043_H03_F NXCI (Nsf Xylem Compr... 52 2e-004
gb|BF517850.1|BF517850 NXSI_029_A11_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BF610064.1|BF610064 NXSI_054_C11_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BF778216.1|BF778216 NXSI_083_G10_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BQ701242.1|BQ701242 NXSI_061_C04_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|CD022200.1|CD022200 NXPV_024_F02_F NXPV (Nsf Xylem Plani... 50 7e-004
gb|DR695127.1|DR695127 EST1085220 Normalized pine embryo li... 50 7e-004
gb|AW870284.1|AW870284 NXNV_128_H04_F Nsf Xylem Normal wood... 48 0.003
gb|BF517368.1|BF517368 NXSI_013_F11_F NXSI (Nsf Xylem Side ... 48 0.003
gb|CD019985.1|CD019985 NXNV008B03 Nsf Xylem Normal wood Ver... 48 0.003
gb|DR059226.1|DR059226 RTNIT1_16_B01.g1_A029 Roots minus ni... 48 0.003
gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library P... 46 0.011
gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood... 46 0.011
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 46 0.011
gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compr... 46 0.011
gb|BE656835.1|BE656835 NXCI_040_B06_F NXCI (Nsf Xylem Compr... 46 0.011
gb|BF010934.1|BF010934 NXCI_094_H06_F NXCI (Nsf Xylem Compr... 46 0.011
gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side ... 46 0.011
gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side ... 46 0.011
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 46 0.011
gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side ... 46 0.011
gb|CD017522.1|CD017522 NXCI_124_B01_F NXCI (Nsf Xylem Compr... 46 0.011
gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control P... 46 0.011
gb|BF169694.1|BF169694 NXCI_126_F04_F NXCI (Nsf Xylem Compr... 44 0.043
gb|CD017587.1|CD017587 NXCI_129_A12_F NXCI (Nsf Xylem Compr... 44 0.043
gb|CX651410.1|CX651410 COLD1_52_E07.b1_A029 Root cold Pinus... 44 0.043
gb|DR100267.1|DR100267 STRR1_62_H11.g1_A033 Stem Response R... 44 0.043
gb|DR160218.1|DR160218 RTFE1_4_D09.g1_A029 Roots minus iron... 44 0.043
gb|DT638876.1|DT638876 EST1153807 Normalized pine embryo li... 44 0.043
gb|BE457983.1|BE457983 NXCI_008_H12_F NXCI (Nsf Xylem Compr... 42 0.17
gb|BF609760.1|BF609760 NXSI_050_B03_F NXSI (Nsf Xylem Side ... 42 0.17
gb|BF778814.1|BF778814 NXSI_087_D09_F NXSI (Nsf Xylem Side ... 42 0.17
gb|BM492221.1|BM492221 NXRV_022_D06_F NXRV (Nsf Xylem Root ... 42 0.17
gb|BQ700740.1|BQ700740 NXRV110_F08_F NXRV (Nsf Xylem Root w... 42 0.17
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 311 bits (157), Expect = 1e-082
Identities = 781/989 (78%)
Strand = Plus / Minus
Query: 1818 tgcctattgaaacagcatcctgttcccacatagactggaccctgaatgccatctagacct 1877
||||| |||||| ||| ||||| |||||||| || || ||||| || ||||| | |||
Sbjct: 2624 tgcctgttgaaaacgcaccctgtgcccacataaacaggcccctgtatcccatccaaaccc 2565
Query: 1878 ttcatgttgatatcaaagaagactatgttccgattagcatatcgatcgtgcaagtcaatg 1937
|||| ||||||||||| |||||| | || |||||||||||||||| | |||||||
Sbjct: 2564 ttcaaattgatatcaaaaaagactgtattgtgattagcatatcgatcatttctgtcaatg 2505
Query: 1938 ccatcaaatctttgtggaaattgtacataacaagttttccttcctagagctggatccatc 1997
|||||||| ||||| || || || |||||||| |||| | || |||| |||||||||
Sbjct: 2504 ccatcaaacctttgagggaactgaacataacagactttcttcccaagagtaggatccatc 2445
Query: 1998 atgaagcacattgcttctctaagagctttgctgctattgaagtaatggtcacaatccaca 2057
|| || ||||| || || | ||| || ||||| | || | |||||||||||||| | |
Sbjct: 2444 ataaaacacatggcctcacgaagggccctgctgttgtttatataatggtcacaatcaaga 2385
Query: 2058 ttgagaagataggcaccatttgtcagcacagcagatacacgaatcagtgcattcattgca 2117
||||| | ||| | ||||| || || || || || ||||||| || || ||||||||||
Sbjct: 2384 ttgagcatataagggccattggtaagaactgcggaaacacgaaccaatgaattcattgca 2325
Query: 2118 ccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatagacaagacgt 2177
||||| || ||||| || | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 2324 ccagcttttttgtggtgttcaaaaccaggtctcttttcacgagaaacatatacaagtcga 2265
Query: 2178 ggtaattcatttccatcagtgtcaagcccaccactgtgccccaagaacacctgaatcatg 2237
|||| |||||| ||||| ||||||||||||||||| || || ||||||||||| |||||
Sbjct: 2264 ggtagttcattgccatcggtgtcaagcccaccactatgacctaagaacacctgtatcatc 2205
Query: 2238 ccaggatggtccctagggttattcccaggccaagcagttccatcagccatggtccacccc 2297
||||||||||||| | ||||| |||||||||| |||||||| ||| |||| ||
Sbjct: 2204 ccaggatggtcccgggtattatttccaggccaaggtgttccatcttgcataatccagcct 2145
Query: 2298 tcttcaggcactttctgtgctttggcaacaagggcattgattcttattttgaattcttca 2357
|||||||| || ||||| ||||| |||||||| |||||||||| | ||||| ||||||
Sbjct: 2144 tcttcaggaaccttctgagctttagcaacaagagcattgattcggaccttgaactcttca 2085
Query: 2358 tactctctcttcattgctcgtctttccttaacaaatgaaggttgaattttgtccttcagg 2417
|| |||||||||||||||| | ||| || ||||| |||||||| | ||| ||||||||
Sbjct: 2084 tattctctcttcattgctctacgttcttttacaaaagaaggttgcactttatccttcaga 2025
Query: 2418 taatctattttttgagcaaagtaaaattctggagctcttggttcaatattgtgcttctta 2477
|| ||||| ||||||||||| || | |||||||| || |||||||||| || |||
Sbjct: 2024 tagtctatcttttgagcaaaataccactctggagccctgggttcaatatcaaatttttta 1965
Query: 2478 caaaagggaacccactttctagcaaattcggcagtttcagagagagactcaaaagtcagc 2537
||| || ||||| || || |||||||| | |||||||| || | ||||| || |||
Sbjct: 1964 acaaatggcacccatttccttgcaaattctgaggtttcagaaagggcttcaaatgttagc 1905
Query: 2538 atagctgagccatcatcagaaacatagcatgacactttgtcaacagggtaatccacagca 2597
|| || | ||||| ||||| ||||| ||||| ||||| ||||| || || ||||||| |
Sbjct: 1904 attgcagctccatcgtcagacacataacatgaaactttatcaactggatagtccacagaa 1845
Query: 2598 agaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatggatccactgta 2657
||||| ||||||||||| || || || | || ||||| ||||||| ||||| |||||
Sbjct: 1844 agaattgacaaaacagtatttgccgtcacaagaggaggctccttcataggatcaactgtg 1785
Query: 2658 ctgacaaagacatcaatgggagccagctgtgatggctctccctctctatcatacctcaat 2717
|||||||| | ||||| | ||||| ||| ||||||||||| |||||||| || |||||
Sbjct: 1784 ctgacaaaaatatcaacagcagccaactgagatggctctccttctctatcgtatctcaaa 1725
Query: 2718 gcaagcctgtcgagatatgtctcacggttgattggataccattttgggaactgatctaga 2777
||||||||| ||||| || || | ||||| ||| |||||| || |||||||| |||
Sbjct: 1724 caaagcctgtcaagataagtttccctattgatgggaagccatttaggaaactgatcaaga 1665
Query: 2778 agccaggacaaggcaaaccagacctcaca 2806
| |||||| | ||||||||| | ||||||
Sbjct: 1664 atccaggatatggcaaaccaaatctcaca 1636
Score = 161 bits (81), Expect = 3e-037
Identities = 222/269 (82%)
Strand = Plus / Minus
Query: 1221 ccataccatataggacaatgtctgctaagcagaatttccactgacccaagagcccaacgg 1280
|||||||| || |||||||| |||||||| ||||||||||| || || | |||||| ||
Sbjct: 3215 ccataccaaattggacaatgcctgctaagaagaatttccacagagcccaaagcccatcgc 3156
Query: 1281 agcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaacaaggtcgt 1340
|| || || || ||||||||||||||||| || || ||||| |||||||| ||| ||
Sbjct: 3155 agaacttggttcagacgatcagaaagattaattggagcagatcccttgaatgcagggcga 3096
Query: 1341 ggtggcatgcagtagattgattgccagcctcttgcatgcattttaaacccagtcagaata 1400
|| ||||| ||||| |||||| |||| || | |||||||||||||| ||||||| ||||
Sbjct: 3095 ggaggcatacagtatattgatcgccaaccacgagcatgcattttaaagccagtcaaaata 3036
Query: 1401 tcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttgtcctcg 1460
|| ||||| || |||||||| ||||| ||||||||||||||||| || | ||||| ||
Sbjct: 3035 tcttctgtcacagaaccatatatccaaccaatctcttttccccaatctgacttgtcttca 2976
Query: 1461 tacccacagctgataacatggatagcttc 1489
|| ||||||||||| |||||||| |||||
Sbjct: 2975 taaccacagctgattacatggattgcttc 2947
Score = 69.9 bits (35), Expect = 8e-010
Identities = 113/139 (81%)
Strand = Plus / Minus
Query: 3414 tcaccatgaactcgagggctacctttctgtctcttgtatctagtcttgcactgagggcag 3473
||||||| ||| ||||||||||||| || | |||||||||||||||||| || || ||
Sbjct: 947 tcaccatccacttgagggctacctttatgccacttgtatctagtcttgcattgtggacaa 888
Query: 3474 cattggttcccttccttgcgctcgtactcatagcaagggcggcagacagggaaggcacac 3533
|||| || || ||||| | ||| || ||||||||||| | ||| || || || ||||||
Sbjct: 887 gattgatttccatccttccactcatattcatagcaaggcctgcatactggaaatgcacac 828
Query: 3534 tcattgcaggcaacaaaga 3552
|||||||| || |||||||
Sbjct: 827 tcattgcaagctacaaaga 809
Score = 60.0 bits (30), Expect = 7e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactccatc 1008
||||| ||||| ||||||||||| |||||||| || ||||||||||| || |||||||
Sbjct: 3485 ccaatcacccagaactgctcattcctccaccattcatcaatgccaaccccgctccatc 3428
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 3043 tagtcacttgcaacatatttttgtcctgtttaaccctccagctctcaactctttctttcc 3102
||||||||||||| ||||||||||||||||| | ||||||| || ||||| || ||||
Sbjct: 1387 tagtcacttgcaatgtatttttgtcctgtttattcttccagctttctactctctccttcc 1328
Query: 3103 agtcaaca 3110
|| |||||
Sbjct: 1327 aggcaaca 1320
Score = 42.1 bits (21), Expect = 0.17
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1146 ggaacagatgtgattggataaacaatggtgttaatgtaagccagcctctccaa 1198
|||| ||| ||||| |||||||| ||||||| || || ||||||||||||||
Sbjct: 3290 ggaatagaagtgataggataaacggtggtgtttatatatgccagcctctccaa 3238
>gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_A04_A029 5', mRNA sequence
Length = 695
Score = 240 bits (121), Expect = 4e-061
Identities = 295/353 (83%)
Strand = Plus / Minus
Query: 1152 gatgtgattggataaacaatggtgttaatgtaagccagcctctccaaaagcttcaatcgc 1211
||||||| |||||||| ||||| || ||||| |||||||||| ||| | |||||||
Sbjct: 416 gatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatctt 357
Query: 1212 ccattgtagccataccatataggacaatgtctgctaagcagaatttccactgacccaaga 1271
||| ||||||||||||| || |||||||| ||||| || |||||||| || || |||||
Sbjct: 356 ccagtgtagccataccaaattggacaatgcctgctcagtagaatttcaacagaaccaagg 297
Query: 1272 gcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaa 1331
||||| |||||||| ||||| | |||||| ||||||||||| |||||||| ||||||||
Sbjct: 296 gcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaat 237
Query: 1332 caaggtcgtggtggcatgcagtagattgattgccagcctcttgcatgcattttaaaccca 1391
||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 236 gcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccca 177
Query: 1392 gtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagtt 1451
|||| |||||| ||||| || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 176 gtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccattctgac 117
Query: 1452 ttgtcctcgtacccacagctgataacatggatagcttccttcagtagagaagc 1504
||||| || || ||||||||||||||||| || ||||| |||| || ||||||
Sbjct: 116 ttgtcttcatatccacagctgataacatgaatggcttctttcaataaagaagc 64
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaac 997
|||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 617 ccaataacccaaaattgctcattcctccaccattcatcaatgccaac 571
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 238 bits (120), Expect = 1e-060
Identities = 561/708 (79%)
Strand = Plus / Minus
Query: 2108 attcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacata 2167
|||||| ||||| || |||||||| || || ||||| || |||||||||||||| |||||
Sbjct: 1581 attcatagcaccggctttcttgtggtgttggaagccaggcctcttttcacgagacacata 1522
Query: 2168 gacaagacgtggtaattcatttccatcagtgtcaagcccaccactgtgccccaagaacac 2227
||| |||||||||| |||||| || ||||| || | ||| |||||||| || || |||||
Sbjct: 1521 gactagacgtggtagttcattgccttcagtatccatccctccactgtgtcctaaaaacac 1462
Query: 2228 ctgaatcatgccaggatggtccctagggttattcccaggccaagcagttccatcagccat 2287
||| ||||| |||||||||||||| | ||||| |||||||| | ||| ||||| |||
Sbjct: 1461 ctgtatcatcccaggatggtccctggtattatttccaggccagggagtgccatcttgcat 1402
Query: 2288 ggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttatttt 2347
||| ||||||||||| || ||||| || || |||||||| |||||||| | | ||
Sbjct: 1401 aacccagccctcttcaggtaccttctgggccttcgcaacaagcgcattgatccgaacctt 1342
Query: 2348 gaattcttcatactctctcttcattgctcgtctttccttaacaaatgaaggttgaatttt 2407
|||||||||||| |||||||||||||| | | || || ||||| | ||| || | |||
Sbjct: 1341 gaattcttcatattctctcttcattgccctccgctcttttacaaaagtaggctgtacttt 1282
Query: 2408 gtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatatt 2467
|||||||| |||||| ||||| | | ||||| | ||||||||||| |||||||| ||
Sbjct: 1281 gtccttcaagtaatccattttcagtgagaagtaccactctggagctctgggttcaatgtt 1222
Query: 2468 gtgcttcttacaaaagggaacccactttctagcaaattcggcagtttcagagagagactc 2527
||| || ||||| || ||||| || || |||||||| | |||||| || || || ||
Sbjct: 1221 aaactttttgcaaaatggcacccatttccttgcaaattctgaagtttctgaaagggattc 1162
Query: 2528 aaaagtcagcatagctgagccatcatcagaaacatagcatgacactttgtcaacagggta 2587
||||||| ||| |||| ||||| |||||||||||||| || || ||||||||||| ||
Sbjct: 1161 gaaagtcaacatggctgctccatcgtcagaaacatagcaggaaaccttgtcaacaggata 1102
Query: 2588 atccacagcaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatgg 2647
|||||||| ||||| |||| ||||||||| || || | || ||||| ||||| || ||
Sbjct: 1101 atccacagacagaatcgacagaacagtgtttgcagtaacaagaggaggctcctttaaagg 1042
Query: 2648 atccactgtactgacaaagacatcaatgggagccagctgtgatggctctccctctctatc 2707
|| |||||||||||||| | ||||| | ||||| ||||||||| || || |||| ||
Sbjct: 1041 gtcaactgtactgacaaaaatgtcaatagcagccaactgtgatggttcaccttctcggtc 982
Query: 2708 atacctcaatgcaagcctgtcgagatatgtctcacggttgattggataccattttgggaa 2767
||| ||||| ||||||||||| || ||||| || | ||||| || |||||| || ||
Sbjct: 981 atatctcaaagcaagcctgtcaaggtatgtttccctattgatgggtagccatttcggaaa 922
Query: 2768 ctgatctagaagccaggacaaggcaaaccagacctcacagataacaga 2815
|||||| || | ||| || | ||||||||| |||||||| || |||||
Sbjct: 921 ctgatccaggatccatgaaatggcaaaccaaacctcacatatcacaga 874
Score = 117 bits (59), Expect = 4e-024
Identities = 161/195 (82%)
Strand = Plus / Minus
Query: 1295 acgatcagaaagattgataggtgcagaacccttgaaacaaggtcgtggtggcatgcagta 1354
||||||||||||||| ||||| ||||| || ||||| ||| || || |||||||||||
Sbjct: 2403 acgatcagaaagatttataggagcagaccctttgaatgcagggcgaggaggcatgcagta 2344
Query: 1355 gattgattgccagcctcttgcatgcattttaaacccagtcagaatatcctctgtaactga 1414
|| ||| |||||| | |||||||||||||| ||||| | |||||| || || |||||
Sbjct: 2343 aatggatctccagccacgagcatgcattttaaatccagttaaaatatcttccgtcactga 2284
Query: 1415 accatagatccagccaatctcttttccccattcagttttgtcctcgtacccacagctgat 1474
|||||| ||||| |||||||| |||||| || || ||||| || ||||||||||| ||
Sbjct: 2283 accataaatccaaccaatctcacgtccccagtctgtcttgtcttcatacccacagctaat 2224
Query: 1475 aacatggatagcttc 1489
|||||||||||||||
Sbjct: 2223 aacatggatagcttc 2209
Score = 81.8 bits (41), Expect = 2e-013
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 3432 ctacctttctgtctcttgtatctagtcttgcactgagggcagcattggttcccttccttg 3491
|||||||| || ||||||||||||||||||| ||||| ||| |||| || || || ||
Sbjct: 176 ctacctttatgcatcttgtatctagtcttgcattgaggacaggattgatttccatctttc 117
Query: 3492 cgctcgtactcatagcaagggcggcagacagggaaggcacactcattgcaggcaacaaag 3551
|||||||| ||||||||||| | ||| ||||| |||||||| ||||||| || ||||||
Sbjct: 116 cgctcgtaatcatagcaaggtctgcacacaggaaaggcacagacattgcacgctacaaag 57
Query: 3552 a 3552
|
Sbjct: 56 a 56
Score = 61.9 bits (31), Expect = 2e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1820 cctattgaaacagcatcctgttcccacatagactggaccctgaatgccatctagaccttt 1879
|||||||||||| |||||||| |||||||| ||||| ||||| || ||||| | ||||||
Sbjct: 1869 cctattgaaacaacatcctgtacccacataaactgggccctggattccatccaaaccttt 1810
Query: 1880 catgttgatatcaaa 1894
| |||||||||||
Sbjct: 1809 gagattgatatcaaa 1795
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 3040 tattagtcacttgcaacatatttttgtcctgtttaaccctccagctctcaactctttctt 3099
|||| ||||| |||||||||||||| |||||||| | ||||||| || ||||| ||||
Sbjct: 637 tattcgtcacctgcaacatatttttctcctgtttgttcttccagctttctactctctctt 578
Query: 3100 tcca 3103
||||
Sbjct: 577 tcca 574
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 230 bits (116), Expect = 3e-058
Identities = 469/587 (79%)
Strand = Plus / Plus
Query: 2220 aagaacacctgaatcatgccaggatggtccctagggttattcccaggccaagcagttcca 2279
||||| ||||| ||||| || |||||||| | || ||| || || ||||| | |||||||
Sbjct: 7 aagaatacctggatcatccccggatggtctcgagtgttgttgcctggccatggagttcca 66
Query: 2280 tcagccatggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgatt 2339
|| ||||||||| |||||||| |||||||| || |||||||| ||||| ||||| ||
Sbjct: 67 tcttgcatggtccatccctcttctggcactttntgcgctttggccacaagagcattaatc 126
Query: 2340 cttattttgaattcttcatactctctcttcattgctcgtctttccttaacaaatgaaggt 2399
| || ||| | |||||||| || ||||||||||||| | ||| |||||||| |||||
Sbjct: 127 cggatcttgtactcttcatattccctcttcattgctctccgttctttaacaaaggaaggc 186
Query: 2400 tgaattttgtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggt 2459
|| | ||| ||||||| ||||| || || || |||||||| ||||||||||| || ||
Sbjct: 187 tgtactttatccttcaaataatcaatcttctgggcaaagtagaattctggagccctgggc 246
Query: 2460 tcaatattgtgcttcttacaaaagggaacccactttctagcaaattcggcagtttcagag 2519
|| ||| ||| || || ||||| || |||||||| || || ||||| | |||||| ||
Sbjct: 247 tcgatactgtattttttgcaaaatggcacccacttccttgcgaattctgaagtttctgaa 306
Query: 2520 agagactcaaaagtcagcatagctgagccatcatcagaaacatagcatgacactttgtca 2579
|| | |||||||||| ||| || | ||||||||||||||||||||||| ||||| ||
Sbjct: 307 agggtttcaaaagtcaacattgccgctccatcatcagaaacatagcatgaaactttatcg 366
Query: 2580 acagggtaatccacagcaagaatggacaaaacagtgttggctgtgatcagtggaggttcc 2639
||||| |||||||| ||||| || |||| |||||| || ||||||| || ||||| |||
Sbjct: 367 acaggataatccacggcaaggatagacagaacagtatttgctgtgacaagaggaggctcc 426
Query: 2640 ttcaatggatccactgtactgacaaagacatcaatgggagccagctgtgatggctctccc 2699
|| | |||||||||||||||||||| | ||||| |||| ||| |||||||||||
Sbjct: 427 tttagaggatccactgtactgacaaaaatatcaacaccggccaactgagatggctctcct 486
Query: 2700 tctctatcatacctcaatgcaagcctgtcgagatatgtctcacggttgattggataccat 2759
||||| ||| ||||||| | ||||||||| |||||||| || ||||| || || ||||
Sbjct: 487 tctctgtcaaacctcaaagaaagcctgtcaagatatgtttctcggttaatgggcatccat 546
Query: 2760 tttgggaactgatctagaagccaggacaaggcaaaccagacctcaca 2806
|| || ||||| || |||| ||| |||| ||||||||||||||||||
Sbjct: 547 ttaggaaactggtcaagaatccatgacacggcaaaccagacctcaca 593
>gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_A01_A029 3', mRNA sequence
Length = 681
Score = 218 bits (110), Expect = 1e-054
Identities = 254/302 (84%)
Strand = Plus / Plus
Query: 1203 ttcaatcgcccattgtagccataccatataggacaatgtctgctaagcagaatttccact 1262
||||||| ||| ||||||||||||| || |||||||| ||||| || |||||||| ||
Sbjct: 8 ttcaatcttccagtgtagccataccaaattggacaatgcctgctcagtagaatttcaaca 67
Query: 1263 gacccaagagcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaa 1322
|| ||||| ||||| |||||||| ||||| | |||||| ||||||||||| ||||||||
Sbjct: 68 gaaccaagggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagat 127
Query: 1323 cccttgaaacaaggtcgtggtggcatgcagtagattgattgccagcctcttgcatgcatt 1382
|||||||| ||| |||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 128 cccttgaatgcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcatt 187
Query: 1383 ttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccc 1442
||||||||||||| |||||| ||||| || |||||||| ||||| |||||||||||||||
Sbjct: 188 ttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccc 247
Query: 1443 cattcagttttgtcctcgtacccacagctgataacatggatagcttccttcagtagagaa 1502
||||| | ||||| || || ||||||||||||||||| || ||||| |||| || ||||
Sbjct: 248 cattctgacttgtcttcatatccacagctgataacatgaatggcttctttcaataaagaa 307
Query: 1503 gc 1504
||
Sbjct: 308 gc 309
>gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV105_E07 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 758
Score = 216 bits (109), Expect = 5e-054
Identities = 292/353 (82%)
Strand = Plus / Minus
Query: 1152 gatgtgattggataaacaatggtgttaatgtaagccagcctctccaaaagcttcaatcgc 1211
||||||| |||||||| ||||| || ||||| |||||||||| ||| | |||||||
Sbjct: 464 gatgtgaggggataaactatggtattgatgtacgccagcctctgcaatggtttcaatctt 405
Query: 1212 ccattgtagccataccatataggacaatgtctgctaagcagaatttccactgacccaaga 1271
||| ||||||||||||| || |||||||| ||||| || | |||||| || || |||||
Sbjct: 404 ccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagg 345
Query: 1272 gcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaa 1331
||||| || | ||| ||||| | |||||| ||||||||||| |||||||| ||||||||
Sbjct: 344 gcccatcgaaacacttgattcaaacgatctgaaagattgattggtgcagatcccttgaat 285
Query: 1332 caaggtcgtggtggcatgcagtagattgattgccagcctcttgcatgcattttaaaccca 1391
||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 284 gcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccca 225
Query: 1392 gtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagtt 1451
|||| |||||| ||||| || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 224 gtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccattctgac 165
Query: 1452 ttgtcctcgtacccacagctgataacatggatagcttccttcagtagagaagc 1504
||||| || || ||||||||||||||||| || ||||| |||| || ||||||
Sbjct: 164 ttgtcttcatatccacagctgataacatgaatggcttctttcaataaagaagc 112
Score = 50.1 bits (25), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgcc 994
|||||||||||||| | |||||| |||||||| || ||||||||
Sbjct: 665 ccaataacccaaaattnctcattcctccaccattcatcaatgcc 622
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 216 bits (109), Expect = 5e-054
Identities = 466/585 (79%)
Strand = Plus / Minus
Query: 2108 attcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacata 2167
|||||| ||||| || |||||||| || || ||||| || |||||||||||||| |||||
Sbjct: 647 attcatagcaccggctttcttgtggtgttggaagccaggcctcttttcacgagacacata 588
Query: 2168 gacaagacgtggtaattcatttccatcagtgtcaagcccaccactgtgccccaagaacac 2227
||| |||||||||| |||||| || ||||| || | ||| |||||||| || || |||||
Sbjct: 587 gactagacgtggtagttcattgccttcagtatccatccctccactgtgtcctaaaaacac 528
Query: 2228 ctgaatcatgccaggatggtccctagggttattcccaggccaagcagttccatcagccat 2287
||| ||||| |||||||||||||| | ||||| |||||||| ||| ||||| |||
Sbjct: 527 ctgtatcatcccaggatggtccctggtattatttccaggccagagagtgccatcttgcat 468
Query: 2288 ggtccacccctcttcaggcactttctgtgctttggcaacaagggcattgattcttatttt 2347
||| ||||||||||| || ||||| || || |||||||| |||||||| | | ||
Sbjct: 467 aacccagccctcttcaggtaccttctgggccttcgcaacaagcgcattgatccgaacctt 408
Query: 2348 gaattcttcatactctctcttcattgctcgtctttccttaacaaatgaaggttgaatttt 2407
|||||||||||| |||||||||||||| | | || || ||||| | ||| || | |||
Sbjct: 407 gaattcttcatattctctcttcattgccctccgctcttttacaaaagtaggctgtacttt 348
Query: 2408 gtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaatatt 2467
|||||||| |||||| ||||| | | |||||| | ||||||||||| |||||||| ||
Sbjct: 347 gtccttcaagtaatccattttcagtgaaaagtaccactctggagctctgggttcaatgtt 288
Query: 2468 gtgcttcttacaaaagggaacccactttctagcaaattcggcagtttcagagagagactc 2527
||| || ||||| || ||||| || || |||||||| | |||||| || || || ||
Sbjct: 287 aaactttttgcaaaatggcacccatttccttgcaaattctgaagtttctgaaagggattc 228
Query: 2528 aaaagtcagcatagctgagccatcatcagaaacatagcatgacactttgtcaacagggta 2587
||||||| ||| |||| ||||| |||||||||||||| || || ||||||||||| ||
Sbjct: 227 gaaagtcaacatggctgctccatcgtcagaaacatagcaggaaaccttgtcaacaggata 168
Query: 2588 atccacagcaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaatgg 2647
|||||||| ||||| |||| ||||||||| || || | || ||||| ||||| || ||
Sbjct: 167 atccacagacagaatcgacagaacagtgtttgcagtaacaagaggaggctcctttaaagg 108
Query: 2648 atccactgtactgacaaagacatcaatgggagccagctgtgatgg 2692
|| |||||||||||||| | ||||| | ||||| |||||||||
Sbjct: 107 gtcaactgtactgacaaaaatgtcaatagcagccaactgtgatgg 63
>gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_H10_A034 5', mRNA sequence
Length = 557
Score = 172 bits (87), Expect = 7e-041
Identities = 237/287 (82%)
Strand = Plus / Minus
Query: 1152 gatgtgattggataaacaatggtgttaatgtaagccagcctctccaaaagcttcaatcgc 1211
||||||| |||||||| ||||| || ||||| |||||||||| ||| | |||||||
Sbjct: 290 gatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatctt 231
Query: 1212 ccattgtagccataccatataggacaatgtctgctaagcagaatttccactgacccaaga 1271
||| ||||||||||||| || |||||||| ||||| || | |||||| || || |||||
Sbjct: 230 ccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagg 171
Query: 1272 gcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaa 1331
||||| || ||||| ||||| | |||||| ||||||||||| |||||||| ||||||||
Sbjct: 170 gcccatcgaagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaat 111
Query: 1332 caaggtcgtggtggcatgcagtagattgattgccagcctcttgcatgcattttaaaccca 1391
||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 110 gcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccca 51
Query: 1392 gtcagaatatcctctgtaactgaaccatagatccagccaatctcttt 1438
|||| |||||| | ||| || |||||||| ||||| |||||||||||
Sbjct: 50 gtcaaaatatcttatgtgacagaaccataaatccacccaatctcttt 4
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaac 997
|||||||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 491 ccaataacccaaaattgctcattcctccaccattcatcaatgccaac 445
>gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC32 3' end, mRNA sequence
Length = 737
Score = 172 bits (87), Expect = 7e-041
Identities = 201/239 (84%)
Strand = Plus / Minus
Query: 1266 ccaagagcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaaccc 1325
||||| ||||| |||||||| ||||| | |||||| ||||||||||| |||||||| |||
Sbjct: 728 ccaagggcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatccc 669
Query: 1326 ttgaaacaaggtcgtggtggcatgcagtagattgattgccagcctcttgcatgcatttta 1385
||||| ||| |||| || |||||||| ||||| |||||||| ||||||||||||
Sbjct: 668 ttgaatgcaggacgtgcaggtatgcagtatattgaaatccagcctcgagcatgcatttta 609
Query: 1386 aacccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccat 1445
|||||||||| |||||| ||||| || |||||||| ||||| ||||||||||||||||||
Sbjct: 608 aacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccat 549
Query: 1446 tcagttttgtcctcgtacccacagctgataacatggatagcttccttcagtagagaagc 1504
|| | ||||| || || ||||||||||||||||| || ||||| |||| || ||||||
Sbjct: 548 tctgacttgtcttcatatccacagctgataacatgaatggcttctttcaataaagaagc 490
Score = 95.6 bits (48), Expect = 1e-017
Identities = 150/184 (81%)
Strand = Plus / Minus
Query: 1793 aacaggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagac 1852
|||||||||||| ||||| | || || ||||| || || || ||||| |||||||| ||
Sbjct: 195 aacaggatcataaccatagagtgcttgtctattaaagcaacaacctgtacccacataaac 136
Query: 1853 tggaccctgaatgccatctagacctttcatgttgatatcaaagaagactatgttccgatt 1912
|| || || || ||||| | |||| ||| | ||||||||||||| || |||| |||||
Sbjct: 135 aggcccttggataccatcgaaacctctcaaggtgatatcaaagaacacagtgttacgatt 76
Query: 1913 agcatatcgatcgtgcaagtcaatgccatcaaatctttgtggaaattgtacataacaagt 1972
||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 75 agcatatcgatcgtgtcgatcaatgccatcaaatctctgaggaaactgtacatagcaagt 16
Query: 1973 tttc 1976
||||
Sbjct: 15 tttc 12
>gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120E04 similar to Cellulose synthase, mRNA
sequence
Length = 431
Score = 168 bits (85), Expect = 1e-039
Identities = 197/233 (84%), Gaps = 1/233 (0%)
Strand = Plus / Minus
Query: 1273 cccaacggagcacctgattaagacgatcagaaagattgataggtgc-agaacccttgaaa 1331
|||| |||||||| ||||| | |||||| ||||||||||| ||||| ||||||||||||
Sbjct: 431 cccatcggagcacttgattcaaacgatctgaaagattgattggtgcgagaacccttgaat 372
Query: 1332 caaggtcgtggtggcatgcagtagattgattgccagcctcttgcatgcattttaaaccca 1391
||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 371 gcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccca 312
Query: 1392 gtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagtt 1451
|||| |||||| ||||| || |||||||| ||||| |||||||||||||||||||| |
Sbjct: 311 gtcaaaatatcttctgtgacagaaccataaatccacccaatctcttttccccattctgac 252
Query: 1452 ttgtcctcgtacccacagctgataacatggatagcttccttcagtagagaagc 1504
||||| || || ||||||||||||||||| || ||||| |||| || ||||||
Sbjct: 251 ttgtcttcatatccacagctgataacatgaatggcttctttcaataaagaagc 199
>gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clone RS02F11 similar to CELLULOSE
SYNTHASE, mRNA sequence
Length = 420
Score = 165 bits (83), Expect = 2e-038
Identities = 227/275 (82%)
Strand = Plus / Minus
Query: 1152 gatgtgattggataaacaatggtgttaatgtaagccagcctctccaaaagcttcaatcgc 1211
||||||| ||||| || ||||| || ||||| |||||||||| ||| | |||||||
Sbjct: 279 gatgtgagaggatacactatggtattgatgtacgccagcctctgcaatggtttcaatctt 220
Query: 1212 ccattgtagccataccatataggacaatgtctgctaagcagaatttccactgacccaaga 1271
||| ||||||||||||| || |||||||| ||||| || | |||||| || || |||||
Sbjct: 219 ccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagagccaagg 160
Query: 1272 gcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaa 1331
||||| |||||||| ||||| | |||||| ||||||||||| |||||||||||||||||
Sbjct: 159 gcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagaacccttgaat 100
Query: 1332 caaggtcgtggtggcatgcagtagattgattgccagcctcttgcatgcattttaaaccca 1391
||| |||| ||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 99 gcaggacgtgcaggcatgcagtatattgaaatccagcctcgagcatgcattttaaaccca 40
Query: 1392 gtcagaatatcctctgtaactgaaccatagatcca 1426
|||| |||||| ||||| || || ||||| |||||
Sbjct: 39 gtcaaaatatcttctgtgacagagccataaatcca 5
>gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_D12 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 450
Score = 135 bits (68), Expect = 2e-029
Identities = 185/224 (82%)
Strand = Plus / Minus
Query: 1221 ccataccatataggacaatgtctgctaagcagaatttccactgacccaagagcccaacgg 1280
|||||||| || |||||||| |||||||| ||||||||||| || || | |||||| ||
Sbjct: 235 ccataccaaattggacaatgcctgctaagaagaatttccacagagcccaaagcccatcgc 176
Query: 1281 agcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaacaaggtcgt 1340
|| || || || ||||||||||||||||| || || ||||| |||||||| ||| ||
Sbjct: 175 agaacttggttcagacgatcagaaagattaattggagcagatcccttgaatgcagggcga 116
Query: 1341 ggtggcatgcagtagattgattgccagcctcttgcatgcattttaaacccagtcagaata 1400
|| ||||| ||||| |||||| |||| || | |||||||||||||| ||||||| ||||
Sbjct: 115 ggaggcatacagtatattgatcgccaaccacgagcatgcattttaaagccagtcaaaata 56
Query: 1401 tcctctgtaactgaaccatagatccagccaatctcttttcccca 1444
|| ||||| || |||||||| ||||| ||||||||||| |||||
Sbjct: 55 tcttctgtcacagaaccatatatccaaccaatctctttacccca 12
Score = 42.1 bits (21), Expect = 0.17
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1146 ggaacagatgtgattggataaacaatggtgttaatgtaagccagcctctccaa 1198
|||| ||| ||||| |||||||| ||||||| || || ||||||||||||||
Sbjct: 310 ggaatagaagtgataggataaacggtggtgtttatatatgccagcctctccaa 258
>gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 5', mRNA sequence
Length = 730
Score = 129 bits (65), Expect = 9e-028
Identities = 173/209 (82%)
Strand = Plus / Minus
Query: 1152 gatgtgattggataaacaatggtgttaatgtaagccagcctctccaaaagcttcaatcgc 1211
||||||| |||||||| ||||| || ||||| |||||||||| ||| | |||||||
Sbjct: 216 gatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatctt 157
Query: 1212 ccattgtagccataccatataggacaatgtctgctaagcagaatttccactgacccaaga 1271
||| ||||||||||||| || |||||||| ||||| || |||||||| || || |||||
Sbjct: 156 ccagtgtagccataccaaattggacaatgcctgctcagtagaatttcaacagaaccaagg 97
Query: 1272 gcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaa 1331
||||| |||||||| ||||| | |||||| ||||||||||| |||||||| ||||||||
Sbjct: 96 gcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaat 37
Query: 1332 caaggtcgtggtggcatgcagtagattga 1360
||| |||| ||||||||||| |||||
Sbjct: 36 gcaggacgtgcaggcatgcagtatattga 8
Score = 77.8 bits (39), Expect = 3e-012
Identities = 162/203 (79%)
Strand = Plus / Minus
Query: 795 ggagggatgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctca 854
||||||||||| | |||||||||||| || ||||| ||||||||||| || ||||| |||
Sbjct: 573 ggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcaccatcttca 514
Query: 855 tcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcaga 914
|| || | |||||| || || || ||||| || |||||||| || | |||||||| |
Sbjct: 513 tctgaagactttgatgtgacagtaaagtttgtgtcaatccctgctagaactttcagtaac 454
Query: 915 ccctggaacaccgcgaagagatgggcagaggtgccaccaataacccaaaactgctcattt 974
|| || || || || || ||||| || || || |||||||||||||| ||||||||
Sbjct: 453 ccttgaaagacggcaaacagatgtgctgatacacctccaataacccaaaattgctcattc 394
Query: 975 ctccaccaatcttcaatgccaac 997
|||||||| || |||||||||||
Sbjct: 393 ctccaccattcatcaatgccaac 371
Score = 42.1 bits (21), Expect = 0.17
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 648 cccttgaggaaggggtagagatgaaggatcacccagatcgagaagaacagctttccaaag 707
||||||||||| || || ||||||| |||||||| | ||||| ||||| ||||||||
Sbjct: 720 cccttgaggaatggataaagatgaacaatcacccacagagagaaaaacagttttccaaac 661
Query: 708 agcggaccccaggattg 724
| |||||||| |||||
Sbjct: 660 aatggaccccaagattg 644
>gb|DN609460.1|DN609460 EST962510 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAD15, mRNA sequence
Length = 400
Score = 121 bits (61), Expect = 2e-025
Identities = 172/209 (82%)
Strand = Plus / Plus
Query: 1152 gatgtgattggataaacaatggtgttaatgtaagccagcctctccaaaagcttcaatcgc 1211
||||||| |||||||| ||||| || ||||| |||||||||| ||| | |||||||
Sbjct: 152 gatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatctt 211
Query: 1212 ccattgtagccataccatataggacaatgtctgctaagcagaatttccactgacccaaga 1271
||| ||||||||||||| || |||||||| ||||| || | |||||| || || |||||
Sbjct: 212 ccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagg 271
Query: 1272 gcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaa 1331
||||| |||||||| ||||| | |||||| ||||||||||| |||||||| ||||||||
Sbjct: 272 gcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaat 331
Query: 1332 caaggtcgtggtggcatgcagtagattga 1360
||| |||| ||||||||||| |||||
Sbjct: 332 gcaggacgtgcaggcatgcagtatattga 360
>gb|DT627755.1|DT627755 EST1156504 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCQ29 5' end, mRNA sequence
Length = 376
Score = 121 bits (61), Expect = 2e-025
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 1152 gatgtgattggataaacaatggtgttaatgtaagccagcctctccaaaagcttcaatcgc 1211
||||||| |||||||| ||||| || ||||| |||||||||| ||| | |||||||
Sbjct: 225 gatgtgagaggataaactatggtattgatgtacgccagcctctgcaatggtttcaatctt 166
Query: 1212 ccattgtagccataccatataggacaatgtctgctaagcagaatttccactgacccaaga 1271
||| ||||||||||||| || |||||||| ||||| || | |||||| || || |||||
Sbjct: 165 ccagtgtagccataccaaattggacaatgcctgctcagtaaaatttcaacagaaccaagg 106
Query: 1272 gcccaacggagcacctgattaagacgatcagaaagattgataggtgcagaacccttgaaa 1331
||||| |||||||| ||||| | |||||| ||||||||||| |||||||| ||||||||
Sbjct: 105 gcccatcggagcacttgattcaaacgatctgaaagattgattggtgcagatcccttgaat 46
Query: 1332 caaggtcgtggtggcatgcagtagattga 1360
||| |||| ||||||||||| |||||
Sbjct: 45 gcaggacgtgcaggcatgcagtatattga 17
>gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_B08 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 536
Score = 115 bits (58), Expect = 1e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 237 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 178
Query: 1449 gttttgtcctcgtacccacagctgataacatggatagcttccttca 1494
|||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 177 gttttgtcttcatatccacagctgatgacatgaatagcctccttca 132
>gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_H09 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 537
Score = 115 bits (58), Expect = 1e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 237 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 178
Query: 1449 gttttgtcctcgtacccacagctgataacatggatagcttccttca 1494
|||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 177 gttttgtcttcatatccacagctgatgacatgaatagcctccttca 132
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 115 bits (58), Expect = 1e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 2518 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 2459
Query: 1449 gttttgtcctcgtacccacagctgataacatggatagcttccttca 1494
|||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 2458 gttttgtcttcatatccacagctgatgacatgaatagcctccttca 2413
Score = 93.7 bits (47), Expect = 5e-017
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 2082 agcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgatgctgaaag 2141
||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| ||
Sbjct: 1837 agcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtgatgctggaaa 1778
Query: 2142 cctggtctcttttcacgagagacatagacaagacgtggtaattcatttccatcagtgtca 2201
|| |||||||| |||||||| ||||| || || || || | ||||| || || || ||
Sbjct: 1777 ccaggtctcttctcacgagaaacatatactagccgaggaagctcattgccttctgtatcg 1718
Query: 2202 agcccaccactgtgccccaagaacacctgaatcatgccaggatggtc 2248
|| || |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 1717 aggccgccactgtgacccaagaacacttggatcataccaggatggtc 1671
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 1832 gcatcctgttcccacatagactggaccctgaatgccatctagacctttcatgttgatatc 1891
|||||| ||||||||||| || || || ||||| ||||| ||||||||||||||||||||
Sbjct: 2087 gcatccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatc 2028
Query: 1892 aaagaa 1897
||||||
Sbjct: 2027 aaagaa 2022
Score = 63.9 bits (32), Expect = 5e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 627 cggttctgcctgcccatgagacccttgaggaa 658
||||||||||||||||||||||||||||||||
Sbjct: 3277 cggttctgcctgcccatgagacccttgaggaa 3246
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactcca 1006
||||||||||| ||||| ||||||| |||||| |||||||||| || ||||||||
Sbjct: 2956 ccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactcca 2901
Score = 52.0 bits (26), Expect = 2e-004
Identities = 188/242 (77%)
Strand = Plus / Minus
Query: 2346 ttgaattcttcatactctctcttcattgctcgtctttccttaacaaatgaaggttgaatt 2405
|||||||||||||| ||||||||||| || || | || || ||||| | ||||||| |
Sbjct: 1573 ttgaattcttcatattctctcttcatggcacggcgctctttgacaaaggtgggttgaaat 1514
Query: 2406 ttgtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaata 2465
||||||||||| || || ||||| |||| || || | ||| ||||| | || |||||
Sbjct: 1513 ttgtccttcagatagtcaattttctgagagaaatagatttcgggagcgcgaggctcaatg 1454
Query: 2466 ttgtgcttcttacaaaagggaacccactttctagcaaattcggcagtttcagagagagac 2525
| | ||||| || || || ||||| ||||| |||||||| | || |||||||||||
Sbjct: 1453 tcgaatttcttgcagaatggtacccattttctggcaaattctgaggtctcagagagagat 1394
Query: 2526 tcaaaagtcagcatagctgagccatcatcagaaacatagcatgacactttgtcaacaggg 2585
|||||||| ||||| | | || |||||||| ||||| || ||||| ||||| ||||||
Sbjct: 1393 tcaaaagtaagcatcgacgctccgtcatcagagacataacaggacacattgtctacaggg 1334
Query: 2586 ta 2587
||
Sbjct: 1333 ta 1332
Score = 44.1 bits (22), Expect = 0.043
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 2766 aactgatctagaagccaggacaaggcaaaccaga 2799
|||||||| |||| ||| ||||||||||||||||
Sbjct: 1153 aactgatcaagaatccatgacaaggcaaaccaga 1120
Score = 44.1 bits (22), Expect = 0.043
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 3494 ctcgtactcatagcaagggcggcagacagggaaggcacactcattgcaggcaac 3547
||||||||||||||| || || |||||||| || | |||||||| ||||||||
Sbjct: 365 ctcgtactcatagcacggccgacagacaggaaacccgcactcattacaggcaac 312
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 115 bits (58), Expect = 1e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 2534 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 2475
Query: 1449 gttttgtcctcgtacccacagctgataacatggatagcttccttca 1494
|||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 2474 gttttgtcttcatatccacagctgatgacatgaatagcctccttca 2429
Score = 93.7 bits (47), Expect = 5e-017
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 2082 agcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgatgctgaaag 2141
||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| ||
Sbjct: 1853 agcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtgatgctggaaa 1794
Query: 2142 cctggtctcttttcacgagagacatagacaagacgtggtaattcatttccatcagtgtca 2201
|| |||||||| |||||||| ||||| || || || || | ||||| || || || ||
Sbjct: 1793 ccaggtctcttctcacgagaaacatatactagccgaggaagctcattgccttctgtatcg 1734
Query: 2202 agcccaccactgtgccccaagaacacctgaatcatgccaggatggtc 2248
|| || |||||||| ||||||||||| || ||||| |||||||||||
Sbjct: 1733 aggccgccactgtgacccaagaacacttggatcataccaggatggtc 1687
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 1832 gcatcctgttcccacatagactggaccctgaatgccatctagacctttcatgttgatatc 1891
|||||| ||||||||||| || || || ||||| ||||| ||||||||||||||||||||
Sbjct: 2103 gcatccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatc 2044
Query: 1892 aaagaa 1897
||||||
Sbjct: 2043 aaagaa 2038
Score = 63.9 bits (32), Expect = 5e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 627 cggttctgcctgcccatgagacccttgaggaa 658
||||||||||||||||||||||||||||||||
Sbjct: 3293 cggttctgcctgcccatgagacccttgaggaa 3262
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactccatctg 1010
||||||||||| ||||| ||||||| |||||| |||||||||| || |||||||| ||
Sbjct: 2972 ccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccacctc 2913
Query: 1011 agctccaatataccagtggcgaaaatggaggcgaaaaga 1049
| |||| ||||||||||| ||||| ||| |||||||
Sbjct: 2912 atttccagaataccagtggcaaaaattgagatgaaaaga 2874
Score = 52.0 bits (26), Expect = 2e-004
Identities = 188/242 (77%)
Strand = Plus / Minus
Query: 2346 ttgaattcttcatactctctcttcattgctcgtctttccttaacaaatgaaggttgaatt 2405
|||||||||||||| ||||||||||| || || | || || ||||| | ||||||| |
Sbjct: 1589 ttgaattcttcatattctctcttcatggcccggcgctctttgacaaaggtgggttgaaat 1530
Query: 2406 ttgtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaata 2465
||||||||||| || || ||||| |||| || || | ||| ||||| | || |||||
Sbjct: 1529 ttgtccttcagatagtcaattttctgagagaaatagatttcgggagcgcgaggctcaatg 1470
Query: 2466 ttgtgcttcttacaaaagggaacccactttctagcaaattcggcagtttcagagagagac 2525
| | ||||| || || || ||||| ||||| |||||||| | || |||||||||||
Sbjct: 1469 tcgaatttcttgcagaatggtacccattttctggcaaattctgaggtctcagagagagat 1410
Query: 2526 tcaaaagtcagcatagctgagccatcatcagaaacatagcatgacactttgtcaacaggg 2585
|||||||| ||||| | | || |||||||| ||||| || ||||| ||||| ||||||
Sbjct: 1409 tcaaaagtaagcatcgacgctccgtcatcagagacataacaggacacattgtctacaggg 1350
Query: 2586 ta 2587
||
Sbjct: 1349 ta 1348
Score = 44.1 bits (22), Expect = 0.043
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 2766 aactgatctagaagccaggacaaggcaaaccaga 2799
|||||||| |||| ||| ||||||||||||||||
Sbjct: 1169 aactgatcaagaatccatgacaaggcaaaccaga 1136
Score = 44.1 bits (22), Expect = 0.043
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 3494 ctcgtactcatagcaagggcggcagacagggaaggcacactcattgcaggcaac 3547
||||||||||||||| || || |||||||| || | |||||||| ||||||||
Sbjct: 381 ctcgtactcatagcacggccgacagacaggaaacccgcactcattacaggcaac 328
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 115 bits (58), Expect = 1e-023
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 2524 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 2465
Query: 1449 gttttgtcctcgtacccacagctgataacatggatagcttccttca 1494
|||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 2464 gttttgtcttcatatccacagctgatgacatgaatagcctccttca 2419
Score = 95.6 bits (48), Expect = 1e-017
Identities = 207/260 (79%)
Strand = Plus / Minus
Query: 1989 ggatccatcatgaagcacattgcttctctaagagctttgctgctattgaagtaatggtca 2048
||||||||||| |||||||| ||||| || | || |||||| | || | ||| || |||
Sbjct: 1936 ggatccatcataaagcacatggcttccctgattgccttgctgttgttaatgtagtgatca 1877
Query: 2049 caatccacattgagaagataggcaccatttgtcagcacagcagatacacgaatcagtgca 2108
||||||| ||| || | | | | | |||| || ||||||||||| || |||| || |||
Sbjct: 1876 caatccagattcagcataaatggagcattggtgagcacagcagaaacccgaaccaaagca 1817
Query: 2109 ttcattgcaccagccttcttgtgatgctgaaagcctggtctcttttcacgagagacatag 2168
||||| ||||| ||||||||||||||||| || || |||||||| |||||||| |||||
Sbjct: 1816 ttcatggcaccggccttcttgtgatgctggaaaccaggtctcttctcacgagaaacatat 1757
Query: 2169 acaagacgtggtaattcatttccatcagtgtcaagcccaccactgtgccccaagaacacc 2228
|| || || || | ||||| || || || || || || |||||||| |||||||||||
Sbjct: 1756 actagccgaggaagctcattgccttctgtatcgaggccgccactgtgacccaagaacact 1697
Query: 2229 tgaatcatgccaggatggtc 2248
|| ||||| |||||||||||
Sbjct: 1696 tggatcataccaggatggtc 1677
Score = 75.8 bits (38), Expect = 1e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 1832 gcatcctgttcccacatagactggaccctgaatgccatctagacctttcatgttgatatc 1891
|||||| ||||||||||| || || || ||||| ||||| ||||||||||||||||||||
Sbjct: 2093 gcatccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatc 2034
Query: 1892 aaagaa 1897
||||||
Sbjct: 2033 aaagaa 2028
Score = 63.9 bits (32), Expect = 5e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 627 cggttctgcctgcccatgagacccttgaggaa 658
||||||||||||||||||||||||||||||||
Sbjct: 3283 cggttctgcctgcccatgagacccttgaggaa 3252
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactccatctg 1010
||||||||||| ||||| ||||||| |||||| |||||||||| || |||||||| ||
Sbjct: 2962 ccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccacctc 2903
Query: 1011 agctccaatataccagtggcgaaaatggaggcgaaaaga 1049
| |||| ||||||||||| ||||| ||| |||||||
Sbjct: 2902 atttccagaataccagtggcaaaaattgagatgaaaaga 2864
Score = 60.0 bits (30), Expect = 7e-007
Identities = 249/322 (77%)
Strand = Plus / Minus
Query: 2346 ttgaattcttcatactctctcttcattgctcgtctttccttaacaaatgaaggttgaatt 2405
|||||||||||||| ||||||||||| || || | || || ||||| | ||||||| |
Sbjct: 1579 ttgaattcttcatattctctcttcatggcccggcgctctttgacaaaggtgggttgaaat 1520
Query: 2406 ttgtccttcaggtaatctattttttgagcaaagtaaaattctggagctcttggttcaata 2465
||||||||||| || || ||||| |||| || || | ||| ||||| | || |||||
Sbjct: 1519 ttgtccttcagatagtcaattttctgagagaaatagatttcgggagcgcgaggctcaatg 1460
Query: 2466 ttgtgcttcttacaaaagggaacccactttctagcaaattcggcagtttcagagagagac 2525
| | ||||| || || || ||||| ||||| |||||||| | || |||||||||||
Sbjct: 1459 tcgaatttcttgcagaatggtacccattttctggcaaattctgaggtctcagagagagat 1400
Query: 2526 tcaaaagtcagcatagctgagccatcatcagaaacatagcatgacactttgtcaacaggg 2585
|||||||| ||||| | | || |||||||| ||||| || ||||| ||||| ||||||
Sbjct: 1399 tcaaaagtaagcatcgacgctccgtcatcagagacataacaggacacattgtctacaggg 1340
Query: 2586 taatccacagcaagaatggacaaaacagtgttggctgtgatcagtggaggttccttcaat 2645
|| || || | ||| || || || || || ||||| || | || ||||| ||||||| |
Sbjct: 1339 tagtctactgaaaggattgataatactgtattggcagtaaccaaaggaggctccttcagt 1280
Query: 2646 ggatccactgtactgacaaaga 2667
|||||||| ||||| |||||||
Sbjct: 1279 ggatccacagtactcacaaaga 1258
Score = 44.1 bits (22), Expect = 0.043
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 2766 aactgatctagaagccaggacaaggcaaaccaga 2799
|||||||| |||| ||| ||||||||||||||||
Sbjct: 1159 aactgatcaagaatccatgacaaggcaaaccaga 1126
>gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus pinaster cDNA clone PPJM13, mRNA
sequence
Length = 520
Score = 107 bits (54), Expect = 3e-021
Identities = 93/106 (87%)
Strand = Plus / Minus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 461 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 402
Query: 1449 gttttgtcctcgtacccacagctgataacatggatagcttccttca 1494
|||||||| || || || |||||||| ||||| ||||| |||||||
Sbjct: 401 gttttgtcttcatatccccagctgatgacatgaatagcctccttca 356
>gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP021G11 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 708
Score = 99.6 bits (50), Expect = 8e-019
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 1796 aggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgg 1855
||||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 168 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 109
Query: 1856 accctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 108 cccctggatgccatctagacccttcatgttgatatcgaagaa 67
Score = 89.7 bits (45), Expect = 8e-016
Identities = 100/117 (85%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaa-ccatagatccagccaatctc 1435
|||||||| || || ||||| ||||||||||| |||||| ||||| ||||| || |||||
Sbjct: 613 tgcattttgaagcctgtcaggatatcctctgtcactgaaaccatatatccatccgatctc 554
Query: 1436 ttttccccattcagttttgtcctcgtacccacagctgataacatggatagcttcctt 1492
||||||||||||||||| |||||||| || |||||||| || || || ||||||||
Sbjct: 553 ctttccccattcagttttctcctcgtatccgcagctgatgacgtgaatggcttcctt 497
>gb|AW985306.1|AW985306 NXNV_135_F04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_135_F04 5' similar to Arabidopsis thaliana sequence
At5g44030 cellulose synthase catalytic subunit-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 418
Score = 99.6 bits (50), Expect = 8e-019
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 1796 aggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgg 1855
||||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 172 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 113
Query: 1856 accctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 112 cccctggatgccatctagacccttcatgttgatatcgaagaa 71
>gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_C12_A029 5', mRNA sequence
Length = 754
Score = 99.6 bits (50), Expect = 8e-019
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 1796 aggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgg 1855
||||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 212 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 153
Query: 1856 accctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 152 cccctggatgccatctagacccttcatgttgatatcgaagaa 111
Score = 91.7 bits (46), Expect = 2e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 655 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 596
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 595 tttccccattcagttttctcctcgta 570
>gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRNA, partial cds
Length = 1989
Score = 99.6 bits (50), Expect = 8e-019
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 1796 aggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgg 1855
||||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 202 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 143
Query: 1856 accctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 142 cccctggatgccatctagacccttcatgttgatatcgaagaa 101
Score = 83.8 bits (42), Expect = 5e-014
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| || |||||||| ||||| || |||||
Sbjct: 645 tgcattttgaagcctgtcaggatatcctctgtcaccgaaccatatatccatccgatctcc 586
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 585 tttccccattcagttttctcctcgta 560
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 629 gttctgcctgcccatgagacccttgaggaaggggtagagatgaaggatcacccagatcga 688
||||||||| |||| ||||||||||||||||| || ||||| | ||||||||| |
Sbjct: 1393 gttctgccttcccagaagacccttgaggaagggatacagatgcaatatcacccagcaggc 1334
Query: 689 gaagaacagctttccaaagagcggaccccaggattggtag 728
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 1333 gaagaatagctttccaaaaagcggtccccatgactggtag 1294
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 99.6 bits (50), Expect = 8e-019
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 1796 aggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgg 1855
||||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 760 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 701
Query: 1856 accctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 700 cccctggatgccatctagacccttcatgttgatatcgaagaa 659
Score = 83.8 bits (42), Expect = 5e-014
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| || |||||||| ||||| || |||||
Sbjct: 1203 tgcattttgaagcctgtcaggatatcctctgtcaccgaaccatatatccatccgatctcc 1144
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 1143 tttccccattcagttttctcctcgta 1118
Score = 71.9 bits (36), Expect = 2e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 2074 catttgtcagcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgat 2133
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 482 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 423
Query: 2134 gctgaaagcctggtctcttttcacgagagacatagacaag 2173
||||| | || ||||||||||||||||| |||||||||||
Sbjct: 422 gctgatatccaggtctcttttcacgagaaacatagacaag 383
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 629 gttctgcctgcccatgagacccttgaggaaggggtagagatgaaggatcacccagatcga 688
||||||||| |||| ||||||||||||||||| || ||||| | ||||||||| |
Sbjct: 1951 gttctgccttcccagaagacccttgaggaagggatacagatgcaatatcacccagcaggc 1892
Query: 689 gaagaacagctttccaaagagcggaccccaggattggtag 728
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 1891 gaagaatagctttccaaaaagcggtccccatgactggtag 1852
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2406 ttgtccttcaggtaatctattttttgagcaaagtaaaa 2443
||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 150 ttgtctttcaggtaatcaattttctgagaaaagtaaaa 113
>gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRNA, partial cds
Length = 2287
Score = 99.6 bits (50), Expect = 8e-019
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 1796 aggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgg 1855
||||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 609 aggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactgg 550
Query: 1856 accctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 549 cccctggatgccatctagacccttcatgttgatatcgaagaa 508
Score = 71.9 bits (36), Expect = 2e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 2074 catttgtcagcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgat 2133
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 331 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 272
Query: 2134 gctgaaagcctggtctcttttcacgagagacatagacaag 2173
||||| | || ||||||||||||||||| |||||||||||
Sbjct: 271 gctgatatccaggtctcttttcacgagaaacatagacaag 232
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 629 gttctgcctgcccatgagacccttgaggaaggggtagagatgaaggatcacccagatcga 688
||||||||| |||| ||||||||||||||||| || ||||| | ||||||||| |
Sbjct: 1839 gttctgccttcccagaagacccttgaggaagggatacagatgcaatatcacccagcaggc 1780
Query: 689 gaagaacagctttccaaagagcggaccccaggattggtag 728
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 1779 gaagaatagctttccaaaaagcggtccccatgactggtag 1740
Score = 50.1 bits (25), Expect = 7e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1430 aatctcttttccccattcagttttgtcctcgta 1462
|||||| ||||||||||||||||| ||||||||
Sbjct: 999 aatctcctttccccattcagttttctcctcgta 967
Score = 44.1 bits (22), Expect = 0.043
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatcca 1426
|||||||| || || ||||| ||||||||||| || |||||||| |||||
Sbjct: 1091 tgcattttgaagcctgtcaggatatcctctgtcaccgaaccatatatcca 1042
>gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_100_C02 5' similar to Arabidopsis thaliana sequence
At5g05170 cellulose synthase catalytic subunit (Ath-B)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 97.6 bits (49), Expect = 3e-018
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| | |||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 292 ccagtcagaatgtnnnctgtgactgatccatagatccatccaagctcttttccccattcc 233
Query: 1449 gttttgtcctcgtacccacagctgataacatggatagcttccttca 1494
|||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct: 232 gttttgtcttcatatccacagctgatgacatgaatagcctccttca 187
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 97.6 bits (49), Expect = 3e-018
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 1797 ggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgga 1856
|||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 1907 ggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactggc 1848
Query: 1857 ccctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 1847 ccctggatgccatctagacccttcatgttgatatcgaagaa 1807
Score = 91.7 bits (46), Expect = 2e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 2351 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 2292
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 2291 tttccccattcagttttctcctcgta 2266
Score = 75.8 bits (38), Expect = 1e-011
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 3455 agtcttgcactgagggcagcattggttcccttccttgcgctcgtactcatagcaagggcg 3514
||||||||||||||||||||| ||||||| ||||| | |||||||||||| || || ||
Sbjct: 309 agtcttgcactgagggcagcaccggttcccatcctttctctcgtactcataacagggacg 250
Query: 3515 gcagacagggaaggcacactcattgcaggc 3544
|| |||||||| ||||||| ||||||||
Sbjct: 249 acacacagggaatccacactcgttgcaggc 220
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 629 gttctgcctgcccatgagacccttgaggaaggggtagagatgaaggatcacccagatcga 688
||||||||| |||| ||||||||||||||||| || ||||| | ||||||||| |
Sbjct: 3099 gttctgccttcccagaagacccttgaggaagggatacagatgcaatatcacccagcaggc 3040
Query: 689 gaagaacagctttccaaagagcggaccccaggattggtag 728
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 3039 gaagaatagctttccaaaaagcggtccccatgactggtag 3000
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 2074 catttgtcagcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgat 2133
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 1630 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 1571
Query: 2134 gctgaaagcctggtctcttttcacgagagacatagacaag 2173
||||| | || |||||||| |||||||| |||||||||||
Sbjct: 1570 gctgatatccaggtctcttctcacgagaaacatagacaag 1531
Score = 61.9 bits (31), Expect = 2e-007
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 2609 aacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacaaagac 2668
|||||| || ||||| ||||| ||||| || |||| ||||||||||||||| |||||||
Sbjct: 1095 aacagtattagctgtaatcagaggaggctctttcagtggatccactgtactcacaaagaa 1036
Query: 2669 atcaatgggagccagctgtgatggctctccctctctatcatacctcaatgcaagcctgtc 2728
||||| ||| || |||| | |||||||| || || || || |||| | | |||||
Sbjct: 1035 atcaacgggtgctagcttgcaaggctctccttccctctcgtatctcatagataatctgtc 976
Query: 2729 gagatatgtctcacggttgattggataccattttgggaactgatctagaagccaggacaa 2788
|||||| || || | |||| ||| |||| || ||||||||||| |||| |||||| ||
Sbjct: 975 gagataagtttctctagtgatgggaaaccacttggggaactgatcaagaatccaggagaa 916
Query: 2789 ggcaaaccagacctcacagataa 2811
||| ||||||| ||| |||||||
Sbjct: 915 ggcgaaccagatctcgcagataa 893
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 2406 ttgtccttcaggtaatctattttttgagcaaagtaaaa 2443
||||| ||||||||||| |||||||||| |||||||||
Sbjct: 1298 ttgtctttcaggtaatcaattttttgagaaaagtaaaa 1261
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 97.6 bits (49), Expect = 3e-018
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 1797 ggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgga 1856
|||||||| ||||||| ||| ||||| |||||| |||||| || |||||||| |||||
Sbjct: 980 ggatcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactggc 921
Query: 1857 ccctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 920 ccctggatgccatctagacccttcatgttgatatcgaagaa 880
Score = 91.7 bits (46), Expect = 2e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 1424 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 1365
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 1364 tttccccattcagttttctcctcgta 1339
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 629 gttctgcctgcccatgagacccttgaggaaggggtagagatgaaggatcacccagatcga 688
||||||||| |||| ||||||||||||||||| || ||||| | ||||||||| |
Sbjct: 2172 gttctgccttcccagaagacccttgaggaagggatacagatgcaatatcacccagcaggc 2113
Query: 689 gaagaacagctttccaaagagcggaccccaggattggtag 728
|||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 2112 gaagaatagctttccaaaaagcggtccccatgactggtag 2073
Score = 63.9 bits (32), Expect = 5e-008
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 2074 catttgtcagcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgat 2133
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 703 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 644
Query: 2134 gctgaaagcctggtctcttttcacgagagacatagacaag 2173
||||| | || |||||||| |||||||| |||||||||||
Sbjct: 643 gctgatatccaggtctcttctcacgagaaacatagacaag 604
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 2609 aacagtgttggctgtgatcagtggaggttccttcaatggatccactgtactgacaaagac 2668
|||||| || ||||| ||||| ||||| || |||| ||||||||||||||| |||||||
Sbjct: 168 aacagtattagctgtaatcagaggaggctctttcagtggatccactgtactcacaaagaa 109
Query: 2669 atcaa 2673
|||||
Sbjct: 108 atcaa 104
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2406 ttgtccttcaggtaatctattttttgagcaaagtaaaa 2443
||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 371 ttgtctttcaggtaatcaattttctgagaaaagtaaaa 334
>gb|BF777175.1|BF777175 NXSI_066_C05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_066_C05 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 342
Score = 91.7 bits (46), Expect = 2e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 179 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 120
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 119 tttccccattcagttttctcctcgta 94
>gb|BF778225.1|BF778225 NXSI_083_H07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_083_H07 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 421
Score = 91.7 bits (46), Expect = 2e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 92 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 33
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 32 tttccccattcagttttctcctcgta 7
>gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_F06_A021 5', mRNA sequence
Length = 716
Score = 91.7 bits (46), Expect = 2e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 199 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 140
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 139 tttccccattcagttttctcctcgta 114
>gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_B01_A029 5', mRNA sequence
Length = 709
Score = 91.7 bits (46), Expect = 2e-016
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 217 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 158
Query: 1437 tttccccattcagttttgtcctcgta 1462
||||||||||||||||| ||||||||
Sbjct: 157 tttccccattcagttttctcctcgta 132
>gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_A02_A029 5', mRNA sequence
Length = 741
Score = 91.7 bits (46), Expect = 2e-016
Identities = 88/102 (86%)
Strand = Plus / Minus
Query: 1796 aggatcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactgg 1855
||||||||| ||||||| ||| ||||| |||||| ||| || || |||||||| |||||
Sbjct: 698 aggatcatacccatacagagcttgcctgttgaaaacgcacccagtccccacatacactgg 639
Query: 1856 accctgaatgccatctagacctttcatgttgatatcaaagaa 1897
||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 638 cccctggatgccatctagacccttcatgttgatatcgaagaa 597
Score = 61.9 bits (31), Expect = 2e-007
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 2074 catttgtcagcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgat 2133
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 420 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 361
Query: 2134 gctgaaagcctggtctcttttcacgagagacatagacaagacg 2176
||||| | || || ||||| |||||||| ||||||||||||||
Sbjct: 360 gctgatatccaggcctcttctcacgagaaacatagacaagacg 318
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2406 ttgtccttcaggtaatctattttttgagcaaagtaaaa 2443
||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 88 ttgtctttcaggtaatcaattttctgagaaaagtaaaa 51
>dbj|BD235986.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 383
Score = 91.7 bits (46), Expect = 2e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1800 tcatatccatacaaagcctgcctattgaaacagcatcctgttcccacatagactggaccc 1859
||||| ||||||| ||| ||||| |||||| |||||| || |||||||| ||||| |||
Sbjct: 383 tcatacccatacagagcttgcctgttgaaaacgcatccagtccccacatacactggcccc 324
Query: 1860 tgaatgccatctagacctttcatgttgatatcaaagaa 1897
|| |||||||||||||| |||||||||||||| |||||
Sbjct: 323 tggatgccatctagacccttcatgttgatatcgaagaa 286
Score = 71.9 bits (36), Expect = 2e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 2074 catttgtcagcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgat 2133
||||||| || || ||||| || |||| ||| || ||||| ||||| || |||||||| |
Sbjct: 109 catttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtggt 50
Query: 2134 gctgaaagcctggtctcttttcacgagagacatagacaag 2173
||||| | || ||||||||||||||||| |||||||||||
Sbjct: 49 gctgatatccaggtctcttttcacgagaaacatagacaag 10
>gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132B11 similar to Cellulose synthase, mRNA
sequence
Length = 540
Score = 89.7 bits (45), Expect = 8e-016
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 948 ccaccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactccat 1007
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 107 ccaccaatcacccaaaactgctcatttctccaccaatcatcaataccaaccccactccat 48
Query: 1008 c 1008
|
Sbjct: 47 c 47
>gb|BF609349.1|BF609349 NXSI_045_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_045_C06 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 296
Score = 85.7 bits (43), Expect = 1e-014
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 1392 gtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagtt 1451
||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||
Sbjct: 248 gtcaggatatcctctgtcactgaaccatatatccatccgatctcctttccccattcagtt 189
Query: 1452 ttgtcctcgta 1462
|| ||||||||
Sbjct: 188 ttctcctcgta 178
>gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A07_A029 3', mRNA sequence
Length = 610
Score = 83.8 bits (42), Expect = 5e-014
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1389 ccagtcagaatatcctctgtaactgaaccatagatccagccaatctcttttccccattca 1448
||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct: 522 ccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccccattcc 581
Query: 1449 gttttgtcctcgtacccacagctgat 1474
| |||||| || || |||||||||||
Sbjct: 582 g-tttgtcttcatatccacagctgat 606
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactccatctg 1010
||||||||||| ||||| ||||||| |||||| |||||||||| || |||||||| ||
Sbjct: 84 ccaataacccagaactgttcatttcgccaccattcttcaatgctcactccactccacctc 143
Query: 1011 agctccaatataccagtggcgaaaatggaggcgaaaaga 1049
| |||| ||||||||||| ||||| ||| |||||||
Sbjct: 144 atttccagaataccagtggcaaaaattgagatgaaaaga 182
>gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18D02, mRNA sequence
Length = 599
Score = 81.8 bits (41), Expect = 2e-013
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 1377 tgcattttaaacccagtcagaatatcctctgtaactgaaccatagatccagccaatctct 1436
|||||||| || || ||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct: 89 tgcattttgaagcctgtcaggatatcctctgtcactgaaccatatatccatccgatctcc 30
Query: 1437 tttccccattcagtttt 1453
|||||||||||||||||
Sbjct: 29 tttccccattcagtttt 13
>gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDNA clone 1NAB10D, mRNA sequence
Length = 546
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 395 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 336
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 335 tcttcgtagccacagctgatcacatgtatagcttc 301
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 497 agacgatctgatagattgataggagcagaccccttgaa 460
>gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_157_H10 5' similar to Arabidopsis thaliana sequence
At4g18780 cellulose synthase catalytic subunit (IRX1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 477
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 217 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 158
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 157 tcttcgtagccacagctgatcacatgtatagcttc 123
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 319 agacgatctgatagattgataggagcagaccccttgaa 282
>gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_064_G04 5' similar to Arabidopsis
thaliana sequence At4g18780 cellulose synthase catalytic
subunit (IRX1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 463
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 259 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 200
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 199 tcttcgtagccacagctgatcacatgtatagcttc 165
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 361 agacgatctgatagattgataggagcagaccccttgaa 324
>gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_103_E08 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 363
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 128 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 69
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 68 tcttcgtagccacagctgatcacatgtatagcttc 34
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 230 agacgatctgatagattgataggagcagaccccttgaa 193
>gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D05_A029 5', mRNA sequence
Length = 763
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 336 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 277
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 276 tcttcgtagccacagctgatcacatgtatagcttc 242
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 438 agacgatctgatagattgataggagcagaccccttgaa 401
>gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 3', mRNA sequence
Length = 852
Score = 77.8 bits (39), Expect = 3e-012
Identities = 162/203 (79%)
Strand = Plus / Minus
Query: 795 ggagggatgagcaaactggtccacttgaacacatatagctcagcaaagtcgccatcctca 854
||||||||||| | |||||||||||| || ||||| ||||||||||| || ||||| |||
Sbjct: 312 ggagggatgagaagactggtccacttaaaaacataaagctcagcaaattcaccatcttca 253
Query: 855 tcagatgcctttgaggtaactgtgaagttggtatcaatcccagccaacactttcagcaga 914
|| || | |||||| || || || ||||| || |||||||| || | |||||||| |
Sbjct: 252 tctgaagactttgatgtgacagtaaagtttgtgtcaatccctgctagaactttcagtaac 193
Query: 915 ccctggaacaccgcgaagagatgggcagaggtgccaccaataacccaaaactgctcattt 974
|| || || || || || ||||| || || || |||||||||||||| ||||||||
Sbjct: 192 ccttgaaagacggcaaacagatgtgctgatacacctccaataacccaaaattgctcattc 133
Query: 975 ctccaccaatcttcaatgccaac 997
|||||||| || |||||||||||
Sbjct: 132 ctccaccattcatcaatgccaac 110
Score = 67.9 bits (34), Expect = 3e-009
Identities = 142/178 (79%)
Strand = Plus / Minus
Query: 547 tgaaaggatcgatcttcacccacagtaaggagaagatagatgcaaggaggatggaccaaa 606
|||||||||| ||| ||||||| || | |||||| || || ||||| || || |||||||
Sbjct: 560 tgaaaggatctatcctcacccaaagcagggagaatatggacgcaagaagaattgaccaaa 501
Query: 607 cgatgacgattgttggcgtgcggttctgcctgcccatgagacccttgaggaaggggtaga 666
| || || |||||||| || |||||||| | ||||| | ||||||||||| || || |
Sbjct: 500 caataactattgttggtgtccggttctggcgacccattaatcccttgaggaatggataaa 441
Query: 667 gatgaaggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattg 724
|||||| |||||||| | ||||| ||||| |||||||| | |||||||| |||||
Sbjct: 440 gatgaacaatcacccacagagagaaaaacagttttccaaacaatggaccccaagattg 383
>gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_17_D10_A029 3', mRNA sequence
Length = 821
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 615 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 674
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 675 tcttcgtagccacagctgatcacatgtatagcttc 709
Score = 46.1 bits (23), Expect = 0.011
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactccatct 1009
||||| ||||||||||| || || |||||||| ||||| |||| || |||||||||||
Sbjct: 168 ccaatcacccaaaactgttcgttcctccaccattcttcgatgctcactccactccatct 226
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 513 agacgatctgatagattgataggagcagaccccttgaa 550
>gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_14_B08_A029 3', mRNA sequence
Length = 632
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 409 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 468
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 469 tcttcgtagccacagctgatcacatgtatagcttc 503
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 307 agacgatctgatagattgataggagcagaccccttgaa 344
>dbj|BD235989.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 619
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 216 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 157
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 156 tcttcgtagccacagctgatcacatgtatagcttc 122
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 318 agacgatctgatagattgataggagcagaccccttgaa 281
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 77.8 bits (39), Expect = 3e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 1395 agaatatcctctgtaactgaaccatagatccagccaatctcttttccccattcagttttg 1454
||||| || ||||| || |||||||||||||| || | |||||| |||||||| |||||
Sbjct: 2078 agaatgtcttctgtcacagaaccatagatccatccgacctctttcccccattcggttttc 2019
Query: 1455 tcctcgtacccacagctgataacatggatagcttc 1489
|| ||||| ||||||||||| ||||| ||||||||
Sbjct: 2018 tcttcgtagccacagctgatcacatgtatagcttc 1984
Score = 77.8 bits (39), Expect = 3e-012
Identities = 234/299 (78%)
Strand = Plus / Minus
Query: 2079 gtcagcacagcagatacacgaatcagtgcattcattgcaccagccttcttgtgatgctga 2138
||||| || ||||| || |||| || ||||||||| ||||| |||||||| || ||||||
Sbjct: 1403 gtcagtacggcagagactcgaaccaatgcattcatggcaccggccttcttatggtgctga 1344
Query: 2139 aagcctggtctcttttcacgagagacatagacaagacgtggtaattcatttccatcagtg 2198
| || || | || |||||||||||||||||||| || || | ||| ||||| || |
Sbjct: 1343 tacccgggccgtttctcacgagagacatagacaagccggggcagttcgtttccttctacg 1284
Query: 2199 tcaagcccaccactgtgccccaagaacacctgaatcatgccaggatggtccctagggtta 2258
||| || | || |||| || ||||| ||||||||||| || || || || | || |||
Sbjct: 1283 tcatgcgctcctgtgtgtcctaagaatacctgaatcatcccggggtgatcacgagtgttg 1224
Query: 2259 ttcccaggccaagcagttccatcagccatggtccacccctcttcaggcactttctgtgct 2318
|||||||||||||| |||||||| |||| |||| || || || || ||||| |||
Sbjct: 1223 ttcccaggccaagctgttccatcctgcatgatccatccttcgtccggtgtcttctgagct 1164
Query: 2319 ttggcaacaagggcattgattcttattttgaattcttcatactctctcttcattgctcg 2377
||||| ||||| |||||||| || | |||| |||| || |||||||| |||||||||||
Sbjct: 1163 ttggcgacaagcgcattgatcctaactttgtattcctcgtactctcttttcattgctcg 1105
Score = 75.8 bits (38), Expect = 1e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 2547 ccatcatcagaaacatagcatgacactttgtcaacagggtaatccacagcaagaatggac 2606
||||| ||||| |||||||| || ||||| || ||||||||||||||||| |||||||||
Sbjct: 935 ccatcgtcagagacatagcaagaaactttctccacagggtaatccacagccagaatggac 876
Query: 2607 aaaacagtgttggc 2620
| ||| ||||||||
Sbjct: 875 agaacggtgttggc 862
Score = 61.9 bits (31), Expect = 2e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 1827 aaacagcatcctgttcccacatagactggaccctgaatgccatctagacctttcatgttg 1886
||||| ||||| || |||||||| ||||| || || |||||||| | || |||||||||
Sbjct: 1655 aaacaacatccagtacccacatacactggcccttggatgccatccaatcccttcatgttg 1596
Query: 1887 atatcaaagaagactatgttccgattagcatatcgatcg 1925
||||| ||||| || |||| ||||| ||||||||||||
Sbjct: 1595 atatcgaagaacacagtgtttcgattggcatatcgatcg 1557
Score = 58.0 bits (29), Expect = 3e-006
Identities = 107/133 (80%)
Strand = Plus / Minus
Query: 612 acgattgttggcgtgcggttctgcctgcccatgagacccttgaggaaggggtagagatga 671
||||| || ||||||||||| |||| ||||||||||| ||||||||||| || | |||
Sbjct: 2861 acgatggtaggcgtgcggttttgccgacccatgagacctttgaggaagggatacaaatgg 2802
Query: 672 aggatcacccagatcgagaagaacagctttccaaagagcggaccccaggattggtagccg 731
|| |||||||| | ||||| |||| ||| ||||| || || ||||| || ||||| ||
Sbjct: 2801 agaatcacccatactgagaaaaacaacttcccaaacagaggtccccatgactggtaccca 2742
Query: 732 ctgttaatggcat 744
|||||| |||||
Sbjct: 2741 ttgttaagggcat 2729
Score = 46.1 bits (23), Expect = 0.011
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 951 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacaccactccatct 1009
||||| ||||||||||| || || |||||||| ||||| |||| || |||||||||||
Sbjct: 2525 ccaatcacccaaaactgttcgttcctccaccattcttcgatgctcactccactccatct 2467
Score = 44.1 bits (22), Expect = 0.043
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1293 agacgatcagaaagattgataggtgcagaacccttgaa 1330
|||||||| || ||||||||||| ||||| ||||||||
Sbjct: 2180 agacgatctgatagattgataggagcagaccccttgaa 2143
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3079 tccagctctcaactctttctttcca 3103
||||||||||||||||||| |||||
Sbjct: 400 tccagctctcaactctttccttcca 376
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 492,714
Number of Sequences: 355925
Number of extensions: 492714
Number of successful extensions: 128307
Number of sequences better than 0.5: 272
Number of HSP's better than 0.5 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127551
Number of HSP's gapped (non-prelim): 737
length of query: 3896
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3876
effective length of database: 210,158,737
effective search space: 814575264612
effective search space used: 814575264612
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)