BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2430806.2.1
         (1380 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO162958.1|CO162958  FLD1_38_C05.g1_A029 Root flooded Pin...    54   2e-005

>gb|CO162958.1|CO162958 FLD1_38_C05.g1_A029 Root flooded Pinus taeda cDNA clone
            FLD1_38_C05_A029 5', mRNA sequence
          Length = 625

 Score = 54.0 bits (27), Expect = 2e-005
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                               
Query: 1064 tatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgca 1114
            ||||||||||| || ||||| || ||||||||||||||||| ||| |||||
Sbjct: 124  tatgcacacgaggacatatctgtgggttcatggatgatgggcctggatgca 174




 Score = 42.1 bits (21), Expect = 0.060
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 941 gaacctgagtggtggaaatttggagattcaaaaacgtattt 981
           |||||| | ||||||||||||||||||  |||| |||||||
Sbjct: 1   gaacctaactggtggaaatttggagatgaaaaatcgtattt 41



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,429
Number of Sequences: 355925
Number of extensions: 172429
Number of successful extensions: 47611
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47609
Number of HSP's gapped (non-prelim): 2
length of query: 1380
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1361
effective length of database: 210,514,662
effective search space: 286510454982
effective search space used: 286510454982
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)